TCONS_00056376 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056376
Unique NameTCONS_00056376
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length409

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056376 ID=TCONS_00056376|Name=TCONS_00056376|organism=Clytia hemisphaerica|type=transcript|length=409bp
AACATCCGCGAATTATTTAGAGAGTGTTTTAATTACCTGATTCATCTTTT
ATGGAGATTAATTACTCTTCTAACATAAGTGAACCTCTCTGCTGTATCCG
AGACTGTATACTTCTTGAGACTTTAACAGTTACTAGAGCTGTTTCTTCAA
ATCATGAAAATGCACTGCAACAGTAGTTGACAAAATGCGCACTGTAAAGC
TAAGGGCACAAAATTGGGGAAAAAGCGAATTTTGGTTGGTGCCTTGTTAG
AATGGAAATATGGGGAAAACGcaaataacacccctgtgtcacagacacgG
TGGACCacccaccccggtggaaaaaataccctacattttcaaccccactg
ggaaattgccctatgattctatccccattgaaaattgaatgggaaaaatt
ggactccaa
Run BLAST on NCBI

transcript from alignment at scaffold_273:246960..247368

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056376 ID=TCONS_00056376|Name=TCONS_00056376|organism=Clytia hemisphaerica|type=transcript|length=409bp|location=Sequence derived from alignment at scaffold_273:246960..247368 (Clytia hemisphaerica)
ttggagtccaatttttcccattcaattttcaatggggatagaatcatagg
gcaatttcccagtggggttgaaaatgtagggtattttttccaccggggtg
ggtGGTCCACcgtgtctgtgacacaggggtgttatttgCGTTTTCCCCAT
ATTTCCATTCTAACAAGGCACCAACCAAAATTCGCTTTTTCCCCAATTTT
GTGCCCTTAGCTTTACAGTGCGCATTTTGTCAACTACTGTTGCAGTGCAT
TTTCATGATTTGAAGAAACAGCTCTAGTAACTGTTAAAGTCTCAAGAAGT
ATACAGTCTCGGATACAGCAGAGAGGTTCACTTATGTTAGAAGAGTAATT
AATCTCCATAAAAGATGAATCAGGTAATTAAAACACTCTCTAAATAATTC
GCGGATGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035524XLOC_035524Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056376-exon-scaffold_273-1491911889:246960..247368TCONS_00056376-exon-scaffold_273-1491911889:246960..247368Clytia hemisphaericaexon
TCONS_00056376-exon-scaffold_273-1510915933:246960..247368TCONS_00056376-exon-scaffold_273-1510915933:246960..247368Clytia hemisphaericaexon
TCONS_00056376-exon-scaffold_273-1575043694:246960..247368TCONS_00056376-exon-scaffold_273-1575043694:246960..247368Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_273supercontigscaffold_273:246960..247368 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0461735	0.612697	0.329049	0	0	0	0	0	0.227389	0	0	0	0.166282	0.167936	0.14354	0.492007	0	0	0.185736	1.45355	1.35216	0.386155	0.208341	0	0	0	0	0.867644	0.261078
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056376 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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