TCONS_00056378 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056378
Unique NameTCONS_00056378
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length826

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056378 ID=TCONS_00056378|Name=TCONS_00056378|organism=Clytia hemisphaerica|type=transcript|length=826bp
CTCGAAGAGAAATTTGTGAGCTTCTAATAAATATCATTGAGATGGTAAAG
GTCTTCTTTTTATGTGTTTAGGAGGGGCATgcaaatcgaaattcaaatgt
TGTTGATGGGGCTGCTGCTAACATTCACCAAGTCAGAACGAACGAACTGC
TGAATGAGATGTTGGCAACTCAAAGGCGAACCAACATTCTCCTGGGCCAA
TTGATTGCaaagGTTTCAGAGCAACCATTACCTAATGCAAACCCAAACCT
AAATCAAACACAAACGGCTCCTTTAGATGAAAATGACTTTgtTCTGGCAC
ATGGCTCCAACTTGTTAGATGTGGCGAGACATGATACTCCTACAATATAT
ACCATTGCCTTGGCTAAGGCGATGTTTACGACGGAAGAACTTGAAAATGG
CATGGTCTCGCCTAAAGCAGGCAAAAGGAAATCGAGGACTGCATTAGATC
CTAATCAAGTCAAGAAAATAAAGCGATTGATTCAACACCAATATAAACTG
GAGGAACCAAAGTTCAAAAAAATTTGGCCTCATTGCCGGAGGTCCATCAA
CCAGGCTGGAAATGACGCCAAAAGAAAAGCTGACGTTGAAGATGAGATTC
AAGAGaataattaatttaaaattataattggtgcaaagaaaaattgttta
ataCAATCTATATTGTGGTATTATTTTTGTTGATCCGTTCCTCAAAATTG
GATATAAAACAACAGCTCTAATTATTATTTTCGCTAACCCATCTCGGACA
AGGTGCTTAAAAACAACTACTAGTCTTCCAGGATATTCAAAACACCGAAT
GGTTTTAAAAGAAGCTTCAAGATTTG
Run BLAST on NCBI

protein sequence of TCONS_00056378-protein

>TCONS_00056378-protein ID=TCONS_00056378-protein|Name=TCONS_00056378-protein|organism=Clytia hemisphaerica|type=polypeptide|length=151bp
MLATQRRTNILLGQLIAKVSEQPLPNANPNLNQTQTAPLDENDFVLAHGS
NLLDVARHDTPTIYTIALAKAMFTTEELENGMVSPKAGKRKSRTALDPNQ
VKKIKRLIQHQYKLEEPKFKKIWPHCRRSINQAGNDAKRKADVEDEIQEN
N
Run BLAST on NCBI

transcript from alignment at scaffold_274:27563..32542-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056378 ID=TCONS_00056378|Name=TCONS_00056378|organism=Clytia hemisphaerica|type=transcript|length=4980bp|location=Sequence derived from alignment at scaffold_274:27563..32542- (Clytia hemisphaerica)
CTCGAAGAGAAATTTGTGAGCTTCTAATAAATATCATTGAGATGGTAAAG
GTCTTCTTTTTATGTGTTTAGGAGGGGCATGCAAATCGAAATTCAAATGT
TGTTGATGGGGCTGCTGCTAACATTCACCAAGTCAGAACGGTAAGGAAGC
CTAATCGAATGGCTGTATTATTTGTTTGCCCTTCATTATCTGTTATCTAT
TGCAGTATTTATTCAGCTGTGAGACCTTGATTGCTTTATTTTTTGCATTC
CACAATATTTCCACTTAACCTTTCCCACTTTTTTGTGACTTTTTTTCAGA
ACGAACTGCTGAATGAGATGTTGGCAACTCAAAGGCGAACCAACATTCTC
CTGGGCCAATTGATTGCAAAGGTATTTTTTTTTCAATTTCTCAAAACAAC
TGGACAACTTTTTTACGCGATTTAACACAACTACAAGCACATCCACGCGT
TTCTAACTTGAACCTAGATAAATTTAAAACATGCAATATTTGTCTGTTTT
TTTTGTAAATTTCGCGGCAAGATAGAACATTGGTGTTACCATTCTTTTTT
AGGTTTCAGAGCAACCATTACCTAATGCAAACCCAAACCTAAATCAAACA
CAAACGGCTCCTTTAGATGAAAATGACTTTGTAAGTATCATTTCAACTTC
TTTGTTTTTAACTTCATATCCACTGAGTTTTGAATACTTAAAGGAAAACT
TTTTGGATTAAGTTCCCGTCAAATTTAGTTTTCATCAGAAGAAGAAACTG
TTAAAATTCTAACTGACTTGATAATTTTGAAAAAACTCTTGAGAAGGAAA
GAAAGACTTGACATTTTTTTTTAGTTTGAATAATTTTTTGAGAGAGACAA
TTGTATTTACTCTCTATTTACTTTATGTATTTTAACCATTGTTATTCTAA
ACCAAATTACCGAATTCAGTGGCGTAGCCAGGATTTTCAAGGGGTGTCGC
AAATTTCAATTTTCAAATGGGCGGTTAGAGGGCTGTTGTTAATTTCATTA
GGGCGGTATCAAAATATAACGCCCAAATACTTCCAAACAACCGGGGTACG
TTATGGGGTGCAGATCCCAACACCTGTGAACCCCAAACACAGGACACGTT
GCACGTGGTTAACCGGCAACTCACCATTAGACGAGTTTACCATTTGTTGA
ATGGATGGCAGAGCCGCACATTTGATCAAAAATATTCAAAGAGTGAGTGT
CTCGTTCGTAATAATAGCTTGTGGTTTCTAAAAGAATGATATTGCCCTTT
GGGAAATTCCTTTTGTTCTAGGGAAATTTCCGGACGAAACTAAAATGGTA
CCGCTATATATTACTCTTTCTCATATGTACTATTAGCCTAGAAATCTAAG
CTAGTTTGATTCAGTCACTTGGATAAATCTGATGGTTAAGTTGTGACTGA
ATAACTANGTTTGATTCAGTCACTTGGATAAATCTGATGGTTAAGTTTTG
ACTGAATAACTAGCTTAGGGACAGTAAACTCGGTAGCTTATCAACTGACA
AAAATATGAAATCACACCAAGTTCTTATTGGCTCTTATTGTAAGATTAGA
TAAACAAACTCTCCGTCTTACAGTTTATGCGCTCCTTTTGTAAAATATAA
AATGAAATTCTATTGTAAAGTGTGCCGATGGAGAGTGAAAGAAAAAATTT
GTTCATTTTTTTCAATAAGTTATGTTCGTGTTATATGGAAAAGTCAACAA
GAGACAAATTCGTTACTTGAGTGATAATTTTGTGATTTGACATAAAAGTA
TTTTGCATGATTTTTACAAAGCTCATCATAAAAATAACCTTCAACAAAAT
AAATAAAAATTACTTTAGACTAGCAGGCTAAAATGCCGTATACAAAACAA
TGTAATCAATCCCCCCCAAAAAACATTTCTTGAGTCTTGATCTCGTATAG
CTGTCACTGAAAATAAGCACCGACAATTTTATGTTCTTCGAAAACGAAAG
ATGTCTGTAAAATCGAGCATAAACCAGTAGCGGCCTGGCTTAAATTTCTT
GGTGGTGCAAATTATGAAATTGGCGCCCCTGGTGTTTTTGTCCTTATTTG
CGCCCTCCATCATTAAGTGAAAATATTAAACTGTAAGAGCAGTGACTGGT
TGAAAGTAACGCCCCTAATCTTTGAAATGGAAATTTTATACCTGGTAAGT
CGACTTAGTCTACATTTCTGCTTTCTAAAACTCTTATCAGAAAAATTACC
AGGTAATATTTAAACTTTCGCAACTCTTTATTAAAGATCAATGGCTGAAA
GAGGCCCCAAAAATTCAGAAGTTGGGAGGAAGGGTTCCTTGTTATTGTGG
CGCCGCAGGCAAAAAAATTTGGTGTAAGAAAGGTCAAACAGCTTAAGGGA
TCTTCTAAAACGGAGAAAGTTAGTCAGTATAAGACCACAAAACCACAGCA
AGAATCAACAAGTTCTGATCATTTTGGCAATCTCTCATTTTGGGGTGAGC
ATTCTCTTTAACCCCAGGTGGATACACAACACTTCTCTACTTCGGATTCA
ATATTGATAGAAGTTTTGAAAAAATTCAAGAGAGGAAGGATGCAAAAGGG
TAAAATAAAGCGCCGCAGGCGAAAAAAGTTAACATTGTACTCATAGAAGG
CGCTATAAACGTGCCGAAGGGATCCAAATTGCCCAATTAAACATCAACAA
AATTTTGGCGCCCCCTTAAAAAGCTCTTTTGGCGCCCCTATCAGATCTTT
CTGGGTGGTGCACTGCACACCCTGCACCCCCTGCCAGGCCGCCACTGATA
AAGTCTCAAATTCATAAAACAACAAAAGAAACCACAACCAGTCAAAAACC
AAGAACTGTCTATCATCTATCCATTACAGTATAATACAATATCATGTCAT
GCAATCCAATCAGAATACAGAACTACAGCATAGGATCTGTACAAGTACTC
TCTCTTATATATTGCCACATACGATAGTCAATGTTCAGCCACAAATCTTT
ACTTTATTATTTGCCATTCTGGAAACAAGCAACTTTTGCTGTCTTTACGA
CGAATAGCATTTATTTTTCTTCATCAGTTCAATTCTTCCCAAAAACAAGA
GAAGCACTATCAGGTCGGGATCAGGTCTTGAAAACTTTTTCTGATACAGT
ATTCCAAATATATCTCTCGGCTCTCTCATGGTAATAGTCTCACATCATAA
TATAATCGAAGAAAGATCTTGCATTCAATGAATCCCATCCTCTTCTACTC
GTTTTCTGATATAATAATTATAATTTACGGTCACCGATGAGACCTCTTTT
GTTCTGCTAACAATTTAACAAAGAGGATAACAATAAATATCAAAGTCGGT
AGCCGTGTCATTGTTTTAGTGCAGACGATGAAGGCCAAAGTGAAGAAAAA
TTTCTTATTTTACGGTCCCGGAGCTGTCTTCATTTCTACCGAGCTCTAAT
AAGCTAAGGGATCGCAATACTGAATTTTGATTCGGTGCCGTAAATTTATT
AAAATCTAAATATCTCTGTCAATTTAAAACATCGCCGCCAATTGAAGGCG
ACGTGATTTTCTAAAAAAGCCGCACGCCGCGCGTATCCGTACGAGCGCTA
GTCGCCGCGCGTCGTCCTCTTACCAGCGCTTTTTATTTCGTGTCTTTCAA
AAACTTTTGTTTCTCAAAAAGGGTGTCGCTGAGTCTTCAGGAGCGACACC
CTAGTGACGCCACTGGAATTACGAAATCAAAAACAAACACTTTTTTCGAA
CATGTATATAATTTTTTCATTCAAATCAGCAACGCAATTTTAATATGTAA
CTTTTAGCTTACACAAAGGTTTCTAGATAACTAAAATGTTCCTTTTCGTT
GCTTTCATTACTTTTTGCTTCATTTCCAATATCTGAGTGTCGCCGTGCTA
GATTACATTTAAGTACTGTAGTACGGTTGTCTAAAGCAATAAAATTGTAT
TTTTAGGTTCTGGCACATGGCTCCAACTTGTTAGATGTGGCGAGACATGA
TACTCCTACAATATATACCATTGCCTTGGCTAAGGCGATGTTTACGACGG
AAGAACTTGAAAATGGCATGGTCTCGCCTAAAGCAGGCAAAAGGAAATCG
AGGACTGCATTAGATCCTAATCAAGTCAAGAAAATAAAGCGTAAATTGAA
TTATTTCATCCACCATGGGTTGACAAATACGATTTAACTTATTTTCAAGG
TTTTTTGCTGTTTTATACAAATAAGTCATGTTAAGCCTGGGAGCTCCTCA
AAAAGTTATGCCTTGTTTTTGTTTTTNAAGCGTAAATTGAATTATTTCAT
CCACCATGGGTTGACAAATACGATTTAACTTATTTTCAAGGTTTTTTGCT
GTTTTATACAAATAAGTCATGTTAAGCCTGGGAGCTCCTCAAAAAGTTAT
GCCTTGTTTTAGTTTTTTTTTAGTTGTGATATAAAAAAATTTAAAATTTG
TTTAAAAAAATTGGCAGTCCGCACATTTTGGTTCATTGCTCTTGAAGGGA
AAAAGACAAAACCAAAGTAGTAATACCTTATTGAAAAGACAATTTTGAAT
GGTAGAATCTAAGCTTTAAATACTTTTTTAAAGAATTCGAAAATGAAAAT
AAAAACTTCGAGAGCAATCAACTAAAATGTGTGGACTGTCAATTTTTTTT
GAAATTCGTTCATATGCTTTTTTTACAGGATTGATTCAACACCAATATAA
ACTGGAGGAACCAAAGTTCAAAAAAATTTGGCCTCATTGCCGGAGGTCCA
TCAACCAGGCTGGAAATGACGCCAAAAGAAAAGCTGACGTTGAAGATGAG
ATTCAAGAGAATAATTAATTTAAAATTATAATTGGTGCAAAGAAAAATTG
TTTAATACAATCTATATTGTGGTATTATTTTTGTTGATCCGTTCCTCAAA
ATTGGATATAAAACAACAGCTCTAATTATTATTTTCGCTAACCCATCTCG
GACAAGGTGCTTAAAAACAACTACTAGTCTTCCAGGATATTCAAAACACC
GAATGGTTTTAAAAGAAGCTTCAAGATTTG

Coding sequence (CDS) from alignment at scaffold_274:27563..32542-

>TCONS_00056378 ID=TCONS_00056378|Name=TCONS_00056378|organism=Clytia hemisphaerica|type=CDS|length=1824bp|location=Sequence derived from alignment at scaffold_274:27563..32542- (Clytia hemisphaerica)
GATTGATTCAACACCAATATAAACTGGAGGAACCAAAGTTCAAAAAAATT
TGGCCTCATTGCCGGAGGTCCATCAACCAGGCTGGAAATGACGCCAAAAG
AAAAGCTGACGTTGAAGATGAGATTCAAGAGAATAATTAAGTTCTGGCAC
ATGGCTCCAACTTGTTAGATGTGGCGAGACATGATACTCCTACAATATAT
ACCATTGCCTTGGCTAAGGCGATGTTTACGACGGAAGAACTTGAAAATGG
CATGGTCTCGCCTAAAGCAGGCAAAAGGAAATCGAGGACTGCATTAGATC
CTAATCAAGTCAAGAAAATAAAGCGTTTCAGAGCAACCATTACCTAATGC
AAACCCAAACCTAAATCAAACACAAACGGCTCCTTTAGATGAAAATGACT
TTATGTTGGCAACTCAAAGGCGAACCAACATTCTCCTGGGCCAATTGATT
GCAAAGGATTGATTCAACACCAATATAAACTGGAGGAACCAAAGTTCAAA
AAAATTTGGCCTCATTGCCGGAGGTCCATCAACCAGGCTGGAAATGACGC
CAAAAGAAAAGCTGACGTTGAAGATGAGATTCAAGAGAATAATTAAGTTC
TGGCACATGGCTCCAACTTGTTAGATGTGGCGAGACATGATACTCCTACA
ATATATACCATTGCCTTGGCTAAGGCGATGTTTACGACGGAAGAACTTGA
AAATGGCATGGTCTCGCCTAAAGCAGGCAAAAGGAAATCGAGGACTGCAT
TAGATCCTAATCAAGTCAAGAAAATAAAGCGTTTCAGAGCAACCATTACC
TAATGCAAACCCAAACCTAAATCAAACACAAACGGCTCCTTTAGATGAAA
ATGACTTTATGTTGGCAACTCAAAGGCGAACCAACATTCTCCTGGGCCAA
TTGATTGCAAAGGATTGATTCAACACCAATATAAACTGGAGGAACCAAAG
TTCAAAAAAATTTGGCCTCATTGCCGGAGGTCCATCAACCAGGCTGGAAA
TGACGCCAAAAGAAAAGCTGACGTTGAAGATGAGATTCAAGAGAATAATT
AAGTTCTGGCACATGGCTCCAACTTGTTAGATGTGGCGAGACATGATACT
CCTACAATATATACCATTGCCTTGGCTAAGGCGATGTTTACGACGGAAGA
ACTTGAAAATGGCATGGTCTCGCCTAAAGCAGGCAAAAGGAAATCGAGGA
CTGCATTAGATCCTAATCAAGTCAAGAAAATAAAGCGTTTCAGAGCAACC
ATTACCTAATGCAAACCCAAACCTAAATCAAACACAAACGGCTCCTTTAG
ATGAAAATGACTTTATGTTGGCAACTCAAAGGCGAACCAACATTCTCCTG
GGCCAATTGATTGCAAAGGATTGATTCAACACCAATATAAACTGGAGGAA
CCAAAGTTCAAAAAAATTTGGCCTCATTGCCGGAGGTCCATCAACCAGGC
TGGAAATGACGCCAAAAGAAAAGCTGACGTTGAAGATGAGATTCAAGAGA
ATAATTAAGTTCTGGCACATGGCTCCAACTTGTTAGATGTGGCGAGACAT
GATACTCCTACAATATATACCATTGCCTTGGCTAAGGCGATGTTTACGAC
GGAAGAACTTGAAAATGGCATGGTCTCGCCTAAAGCAGGCAAAAGGAAAT
CGAGGACTGCATTAGATCCTAATCAAGTCAAGAAAATAAAGCGTTTCAGA
GCAACCATTACCTAATGCAAACCCAAACCTAAATCAAACACAAACGGCTC
CTTTAGATGAAAATGACTTTATGTTGGCAACTCAAAGGCGAACCAACATT
CTCCTGGGCCAATTGATTGCAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035526XLOC_035526Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056378-exon-scaffold_274-1575043694:32403..32542TCONS_00056378-exon-scaffold_274-1575043694:32403..32542Clytia hemisphaericaexon
TCONS_00056378-exon-scaffold_274-1575043694:32172..32243TCONS_00056378-exon-scaffold_274-1575043694:32172..32243Clytia hemisphaericaexon
TCONS_00056378-exon-scaffold_274-1575043694:31913..31990TCONS_00056378-exon-scaffold_274-1575043694:31913..31990Clytia hemisphaericaexon
TCONS_00056378-exon-scaffold_274-1575043694:28453..28636TCONS_00056378-exon-scaffold_274-1575043694:28453..28636Clytia hemisphaericaexon
TCONS_00056378-exon-scaffold_274-1575043694:27563..27914TCONS_00056378-exon-scaffold_274-1575043694:27563..27914Clytia hemisphaericaexon
TCONS_00056378-exon-scaffold_274-1510915933:32403..32542TCONS_00056378-exon-scaffold_274-1510915933:32403..32542Clytia hemisphaericaexon
TCONS_00056378-exon-scaffold_274-1510915933:32172..32243TCONS_00056378-exon-scaffold_274-1510915933:32172..32243Clytia hemisphaericaexon
TCONS_00056378-exon-scaffold_274-1510915933:31913..31990TCONS_00056378-exon-scaffold_274-1510915933:31913..31990Clytia hemisphaericaexon
TCONS_00056378-exon-scaffold_274-1510915933:28453..28636TCONS_00056378-exon-scaffold_274-1510915933:28453..28636Clytia hemisphaericaexon
TCONS_00056378-exon-scaffold_274-1510915933:27563..27914TCONS_00056378-exon-scaffold_274-1510915933:27563..27914Clytia hemisphaericaexon
TCONS_00056378-exon-scaffold_274-1491911889:32403..32542TCONS_00056378-exon-scaffold_274-1491911889:32403..32542Clytia hemisphaericaexon
TCONS_00056378-exon-scaffold_274-1491911889:32172..32243TCONS_00056378-exon-scaffold_274-1491911889:32172..32243Clytia hemisphaericaexon
TCONS_00056378-exon-scaffold_274-1491911889:31913..31990TCONS_00056378-exon-scaffold_274-1491911889:31913..31990Clytia hemisphaericaexon
TCONS_00056378-exon-scaffold_274-1491911889:28453..28636TCONS_00056378-exon-scaffold_274-1491911889:28453..28636Clytia hemisphaericaexon
TCONS_00056378-exon-scaffold_274-1491911889:27563..27914TCONS_00056378-exon-scaffold_274-1491911889:27563..27914Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056378-proteinTCONS_00056378-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_274supercontigscaffold_274:27563..32542 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.70221	5.27911	2.04207	1.02297	21.6674	17.596	14.0432	13.5233	12.8887	9.80334	8.72061	15.7751	11.685	13.7154	19.3615	15.7046	32.1057	31.4188	14.7297	11.7151	25.683	19.6866	15.915	17.11	0.0929608	0.556195	7.44646	6.13437	5.71042	6.21988
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR018379BEN_domain
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056378 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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