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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056384 ID=TCONS_00056384|Name=TCONS_00056384|organism=Clytia hemisphaerica|type=transcript|length=864bp
ATTGACATGATGAGTTTCCTGATCTTCTCTTGAAACGTGCATAAATACAA
GAACATACCATGGTTTTGCTGGCGTCACCAAAGTCTAGTGTCTCTACATC
TAAGTTGATTGCATCCTCAGGAACGACGACTCGTTGATATCTAAGGGTGT
TGAGTTCTTGCATCATCTCGAAGTGCGTTTCCCACAATGGTCTGAGCTCA
TCTGGTATCTTATCATCCCAGTCGAGGTTTAAGTGAACAAGTTCTTGCAG
ATCCATCTTCATAGCACTGACGATTGGTGTCACCTTTCCTGTTAAATCGA
AGATCTCTGCTACCTTGGATGAACAATGTCTGCGAGTGAGTTTGGAAGGT
ATGATGTTGACGGTGTTTAATGGCTTCTTGCCACGACATTTCTTGGCGAA
ATTGAGTTGGCCAATATTGAGTGCTAGTGTATCGTCTTTGGGAAACCATC
TCATTCCAGCAACGTGTATGGTCTCTCCATCGTCTGTGAGCTTCTCCAAA
GGTTCTTTGCCTGAAAGCGAAACACCTTTCAATTGGAATCCTCCTTTGTT
GATGACGATTTCTAGATCATCAGCTAGATTGTGAGCTTCAGTGATTGATT
GTGCACCAGTGATGCAATCGTCCACGTAGACGTCGTCTTGAATCACTTGG
TTAACGTTGGGATATTGATCTTGAGAAATTTCGGCAACCTGTCGCAGGGC
GTATTCAGCCTGATTTCCACTTGAGCGAACACCGTATATGAGCGTTTTGA
TAACCTTTTCTTTGGGTATTTTTGCTGGGTCGAGATTCTCTTCCCAAATA
TATCGTTGATAACACCAATCTGATTGCCTGAGTCGTATGGTGTTATACAT
TTTTCTGATATCAG Run BLAST on NCBI protein sequence of TCONS_00056384-protein >TCONS_00056384-protein ID=TCONS_00056384-protein|Name=TCONS_00056384-protein|organism=Clytia hemisphaerica|type=polypeptide|length=287bp
DIRKMYNTIRLRQSDWCYQRYIWEENLDPAKIPKEKVIKTLIYGVRSSGN
QAEYALRQVAEISQDQYPNVNQVIQDDVYVDDCITGAQSITEAHNLADDL
EIVINKGGFQLKGVSLSGKEPLEKLTDDGETIHVAGMRWFPKDDTLALNI
GQLNFAKKCRGKKPLNTVNIIPSKLTRRHCSSKVAEIFDLTGKVTPIVSA
MKMDLQELVHLNLDWDDKIPDELRPLWETHFEMMQELNTLRYQRVVVPED
AINLDVETLDFGDASKTMVCSCIYARFKRRSGNSSCQ Run BLAST on NCBI transcript from alignment at scaffold_274:60338..61201 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056384 ID=TCONS_00056384|Name=TCONS_00056384|organism=Clytia hemisphaerica|type=transcript|length=864bp|location=Sequence derived from alignment at scaffold_274:60338..61201 (Clytia hemisphaerica)
CTGATATCAGAAAAATGTATAACACCATACGACTCAGGCAATCAGATTGG
TGTTATCAACGATATATTTGGGAAGAGAATCTCGACCCAGCAAAAATACC
CAAAGAAAAGGTTATCAAAACGCTCATATACGGTGTTCGCTCAAGTGGAA
ATCAGGCTGAATACGCCCTGCGACAGGTTGCCGAAATTTCTCAAGATCAA
TATCCCAACGTTAACCAAGTGATTCAAGACGACGTCTACGTGGACGATTG
CATCACTGGTGCACAATCAATCACTGAAGCTCACAATCTAGCTGATGATC
TAGAAATCGTCATCAACAAAGGAGGATTCCAATTGAAAGGTGTTTCGCTT
TCAGGCAAAGAACCTTTGGAGAAGCTCACAGACGATGGAGAGACCATACA
CGTTGCTGGAATGAGATGGTTTCCCAAAGACGATACACTAGCACTCAATA
TTGGCCAACTCAATTTCGCCAAGAAATGTCGTGGCAAGAAGCCATTAAAC
ACCGTCAACATCATACCTTCCAAACTCACTCGCAGACATTGTTCATCCAA
GGTAGCAGAGATCTTCGATTTAACAGGAAAGGTGACACCAATCGTCAGTG
CTATGAAGATGGATCTGCAAGAACTTGTTCACTTAAACCTCGACTGGGAT
GATAAGATACCAGATGAGCTCAGACCATTGTGGGAAACGCACTTCGAGAT
GATGCAAGAACTCAACACCCTTAGATATCAACGAGTCGTCGTTCCTGAGG
ATGCAATCAACTTAGATGTAGAGACACTAGACTTTGGTGACGCCAGCAAA
ACCATGGTATGTTCTTGTATTTATGCACGTTTCAAGAGAAGATCAGGAAA
CTCATCATGTCAAT Coding sequence (CDS) from alignment at scaffold_274:60338..61201 >TCONS_00056384 ID=TCONS_00056384|Name=TCONS_00056384|organism=Clytia hemisphaerica|type=CDS|length=861bp|location=Sequence derived from alignment at scaffold_274:60338..61201 (Clytia hemisphaerica)
GATATCAGAAAAATGTATAACACCATACGACTCAGGCAATCAGATTGGTG
TTATCAACGATATATTTGGGAAGAGAATCTCGACCCAGCAAAAATACCCA
AAGAAAAGGTTATCAAAACGCTCATATACGGTGTTCGCTCAAGTGGAAAT
CAGGCTGAATACGCCCTGCGACAGGTTGCCGAAATTTCTCAAGATCAATA
TCCCAACGTTAACCAAGTGATTCAAGACGACGTCTACGTGGACGATTGCA
TCACTGGTGCACAATCAATCACTGAAGCTCACAATCTAGCTGATGATCTA
GAAATCGTCATCAACAAAGGAGGATTCCAATTGAAAGGTGTTTCGCTTTC
AGGCAAAGAACCTTTGGAGAAGCTCACAGACGATGGAGAGACCATACACG
TTGCTGGAATGAGATGGTTTCCCAAAGACGATACACTAGCACTCAATATT
GGCCAACTCAATTTCGCCAAGAAATGTCGTGGCAAGAAGCCATTAAACAC
CGTCAACATCATACCTTCCAAACTCACTCGCAGACATTGTTCATCCAAGG
TAGCAGAGATCTTCGATTTAACAGGAAAGGTGACACCAATCGTCAGTGCT
ATGAAGATGGATCTGCAAGAACTTGTTCACTTAAACCTCGACTGGGATGA
TAAGATACCAGATGAGCTCAGACCATTGTGGGAAACGCACTTCGAGATGA
TGCAAGAACTCAACACCCTTAGATATCAACGAGTCGTCGTTCCTGAGGAT
GCAATCAACTTAGATGTAGAGACACTAGACTTTGGTGACGCCAGCAAAAC
CATGGTATGTTCTTGTATTTATGCACGTTTCAAGAGAAGATCAGGAAACT
CATCATGTCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056384-exon-scaffold_274-1491911889:60338..61201 | TCONS_00056384-exon-scaffold_274-1491911889:60338..61201 | Clytia hemisphaerica | exon |
| TCONS_00056384-exon-scaffold_274-1510915933:60338..61201 | TCONS_00056384-exon-scaffold_274-1510915933:60338..61201 | Clytia hemisphaerica | exon |
| TCONS_00056384-exon-scaffold_274-1575043694:60338..61201 | TCONS_00056384-exon-scaffold_274-1575043694:60338..61201 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_274 | supercontig | scaffold_274:60338..61201 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR008042 | Retrotrans_Pao |
Blast
The following BLAST results are available for this feature:
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