TCONS_00056398 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056398
Unique NameTCONS_00056398
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length293

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056398 ID=TCONS_00056398|Name=TCONS_00056398|organism=Clytia hemisphaerica|type=transcript|length=293bp
TGAAAAGTACGTACTTGCCAGGGGgctatagccatttgcgtacgcttgcg
tacagggggagagTTAAGTTTTTATTTGTGCTACATTTTTCTTTAGAggg
ttttaataatttttactCAGTGCGTTTCTAATTTTtgttaagtttttatt
tttaattgcatttttttGTGTTAAGTTTTTTAGCGGTATTTTCTTCGAAG
TTTTTGACGAAATCAGTGGAGAtttcttttgacaaaaaatttataGATTT
TGTTCTGCTTTTTCTGGACACACtgaatttcagttttttctgg
Run BLAST on NCBI

transcript from alignment at scaffold_275:68448..68740

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056398 ID=TCONS_00056398|Name=TCONS_00056398|organism=Clytia hemisphaerica|type=transcript|length=293bp|location=Sequence derived from alignment at scaffold_275:68448..68740 (Clytia hemisphaerica)
ccagaaaaaactgaaattcaGTGTGTCCAGAAAAAGCAGAACAAAATCta
taaattttttgtcaaaagaaaTCTCCACTGATTTCGTCAAAAACTTCGAA
GAAAATACCGCTAAAAAACTTAACACaaaaaaatgcaattaaaaataaaa
acttaacaAAAATTAGAAACGCACTGagtaaaaattattaaaacccTCTA
AAGAAAAATGTAGCACAAATAAAAACTTAActctccccctgtacgcaagc
gtacgcaaatggctatagcCCCCTGGCAAGTACGTACTTTTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035543XLOC_035543Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056398-exon-scaffold_275-1491911889:68448..68740TCONS_00056398-exon-scaffold_275-1491911889:68448..68740Clytia hemisphaericaexon
TCONS_00056398-exon-scaffold_275-1510915933:68448..68740TCONS_00056398-exon-scaffold_275-1510915933:68448..68740Clytia hemisphaericaexon
TCONS_00056398-exon-scaffold_275-1575043694:68448..68740TCONS_00056398-exon-scaffold_275-1575043694:68448..68740Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_275supercontigscaffold_275:68448..68740 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.68442	0	0.476795	0.46647	14.7649	11.2187	11.3693	9.12326	4.61313	7.91184	6.09858	4.48725	3.60019	2.86461	1.91293	3.14196	3.09069	4.41927	2.68586	1.8737	5.93331	3.78577	2.89698	3.3674	0	0	9.08366	12.3247	9.34785	6.66679
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056398 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top