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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056399 ID=TCONS_00056399|Name=TCONS_00056399|organism=Clytia hemisphaerica|type=transcript|length=1243bp
GGGGAAAGTAGCGTATTCACATTATTTGCAATCTATGATTTGCAGTTATG
ttaatcaaatgactttggagctTTGCTGAAATTGAGAATCATGTTCCATG
TTTTGTTAAATAGCCTCAAGTTAGAGCCATTGATGGTATATCCtacagtt
tttgttttgaaaacagattcaattaaaaatttgatATCAAATCGGATGAG
CCATGCTAAATGCTCTAAACAGAGGTTACAGAGTGAAATATgattatgat
aaaatattgcgATGCTTTACTTCACAATTGtcaacaaactatacatttgt
TGATATTGAGAAGCGTGCAGAAAAGATTTACTCAATCAATTTGAGAAACA
AACCTGTCAATGCATTAGGTTTGGAATTTATGGTTGATATCGCAAATGCT
TTAAAAGAACTGGAAAGAAATGATGATTGCAAAGCTGTGATGTTTGTGTC
AAATTTGGAGACATTTTCAGCTGGCTTTCAGTCAAATGAACTGCTCACTC
AAGATTTGAAAAGAATGGAAAGCTTTTGGTCTACAGCTCAAAATTTAGgt
ctttcaattttgaaaactcCACTTATTACTGCATCAGCTGTTGAAGGATC
CTGTATTGCAGGTGGTTGTTATTTTCCGTTCCTTTCAGACATCAGCGTAA
TGAGTTCCTCTGATAAACTGCGTATTGGGATTGCTGCTACACGTATGGGT
ATAGTGCCTCCTAAAATCTTGCTACTTCCTCTACAAAACCTTGTTGGATT
CAGAAAAGCAGAATTTTATGCTTCACGCAGTATTTTATTGAAGCCAGAGG
AGGCTCATAAATGTGGCATGATACAAACTGTTGTACCAAGGTCTGAAGTA
TTGAAGACAGCAATAAATCAAATTAATCTTTATTTGCAAATTCCTGAGAG
TGGGTTACTGGAAAATAAAAGATTATTCAACGCAAAAATACTTCAGGAGA
TTGATAATGAATCATTTCTGAAAGCAGAggtaaaagatttttgtgaCAGG
TTGCAGGAACCAgaaactcaacaaaaaatgcaaagtcattttgataaatt
ttctaAACGTAATTAggataaaatataattttattaggGCTATTCTTTTG
ATAAATCAgaatttaaatatatatttttaacatattttttagAATGATAA
TTGAGGCAGTGAGATTATTCTTCAAATACAAACAGTTGTGTCCTTTTTCA
AATACCTTTACACAaatattcattttgaaaaattttgtgttaa Run BLAST on NCBI protein sequence of TCONS_00056399-protein >TCONS_00056399-protein ID=TCONS_00056399-protein|Name=TCONS_00056399-protein|organism=Clytia hemisphaerica|type=polypeptide|length=287bp
MLNALNRGYRVKYDYDKILRCFTSQLSTNYTFVDIEKRAEKIYSINLRNK
PVNALGLEFMVDIANALKELERNDDCKAVMFVSNLETFSAGFQSNELLTQ
DLKRMESFWSTAQNLGLSILKTPLITASAVEGSCIAGGCYFPFLSDISVM
SSSDKLRIGIAATRMGIVPPKILLLPLQNLVGFRKAEFYASRSILLKPEE
AHKCGMIQTVVPRSEVLKTAINQINLYLQIPESGLLENKRLFNAKILQEI
DNESFLKAEVKDFCDRLQEPETQQKMQSHFDKFSKRN Run BLAST on NCBI transcript from alignment at scaffold_275:93064..94306 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056399 ID=TCONS_00056399|Name=TCONS_00056399|organism=Clytia hemisphaerica|type=transcript|length=1243bp|location=Sequence derived from alignment at scaffold_275:93064..94306 (Clytia hemisphaerica)
ttaacacaaaatttttcaaaatgaatattTGTGTAAAGGTATTTGAAAAA
GGACACAACTGTTTGTATTTGAAGAATAATCTCACTGCCTCAATTATCAT
TctaaaaaatatgttaaaaatatatatttaaattcTGATTTATCAAAAGA
ATAGCcctaataaaattatattttatccTAATTACGTTtagaaaatttat
caaaatgactttgcattttttgttgagtttcTGGTTCCTGCAACCTGtca
caaaaatcttttaccTCTGCTTTCAGAAATGATTCATTATCAATCTCCTG
AAGTATTTTTGCGTTGAATAATCTTTTATTTTCCAGTAACCCACTCTCAG
GAATTTGCAAATAAAGATTAATTTGATTTATTGCTGTCTTCAATACTTCA
GACCTTGGTACAACAGTTTGTATCATGCCACATTTATGAGCCTCCTCTGG
CTTCAATAAAATACTGCGTGAAGCATAAAATTCTGCTTTTCTGAATCCAA
CAAGGTTTTGTAGAGGAAGTAGCAAGATTTTAGGAGGCACTATACCCATA
CGTGTAGCAGCAATCCCAATACGCAGTTTATCAGAGGAACTCATTACGCT
GATGTCTGAAAGGAACGGAAAATAACAACCACCTGCAATACAGGATCCTT
CAACAGCTGATGCAGTAATAAGTGgagttttcaaaattgaaagacCTAAA
TTTTGAGCTGTAGACCAAAAGCTTTCCATTCTTTTCAAATCTTGAGTGAG
CAGTTCATTTGACTGAAAGCCAGCTGAAAATGTCTCCAAATTTGACACAA
ACATCACAGCTTTGCAATCATCATTTCTTTCCAGTTCTTTTAAAGCATTT
GCGATATCAACCATAAATTCCAAACCTAATGCATTGACAGGTTTGTTTCT
CAAATTGATTGAGTAAATCTTTTCTGCACGCTTCTCAATATCAacaaatg
tatagtttgttgaCAATTGTGAAGTAAAGCATcgcaatattttatcataa
tcATATTTCACTCTGTAACCTCTGTTTAGAGCATTTAGCATGGCTCATCC
GATTTGATatcaaatttttaattgaatctgttttcaaaacaaaaactgta
GGATATACCATCAATGGCTCTAACTTGAGGCTATTTAACAAAACATGGAA
CATGATTCTCAATTTCAGCAAagctccaaagtcatttgattaaCATAACT
GCAAATCATAGATTGCAAATAATGTGAATACGCTACTTTCCCC Coding sequence (CDS) from alignment at scaffold_275:93064..94306 >TCONS_00056399 ID=TCONS_00056399|Name=TCONS_00056399|organism=Clytia hemisphaerica|type=CDS|length=864bp|location=Sequence derived from alignment at scaffold_275:93064..94306 (Clytia hemisphaerica)
cTAATTACGTTtagaaaatttatcaaaatgactttgcattttttgttgag
tttcTGGTTCCTGCAACCTGtcacaaaaatcttttaccTCTGCTTTCAGA
AATGATTCATTATCAATCTCCTGAAGTATTTTTGCGTTGAATAATCTTTT
ATTTTCCAGTAACCCACTCTCAGGAATTTGCAAATAAAGATTAATTTGAT
TTATTGCTGTCTTCAATACTTCAGACCTTGGTACAACAGTTTGTATCATG
CCACATTTATGAGCCTCCTCTGGCTTCAATAAAATACTGCGTGAAGCATA
AAATTCTGCTTTTCTGAATCCAACAAGGTTTTGTAGAGGAAGTAGCAAGA
TTTTAGGAGGCACTATACCCATACGTGTAGCAGCAATCCCAATACGCAGT
TTATCAGAGGAACTCATTACGCTGATGTCTGAAAGGAACGGAAAATAACA
ACCACCTGCAATACAGGATCCTTCAACAGCTGATGCAGTAATAAGTGgag
ttttcaaaattgaaagacCTAAATTTTGAGCTGTAGACCAAAAGCTTTCC
ATTCTTTTCAAATCTTGAGTGAGCAGTTCATTTGACTGAAAGCCAGCTGA
AAATGTCTCCAAATTTGACACAAACATCACAGCTTTGCAATCATCATTTC
TTTCCAGTTCTTTTAAAGCATTTGCGATATCAACCATAAATTCCAAACCT
AATGCATTGACAGGTTTGTTTCTCAAATTGATTGAGTAAATCTTTTCTGC
ACGCTTCTCAATATCAacaaatgtatagtttgttgaCAATTGTGAAGTAA
AGCATcgcaatattttatcataatcATATTTCACTCTGTAACCTCTGTTT
AGAGCATTTAGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056399-exon-scaffold_275-1491911889:93064..94306 | TCONS_00056399-exon-scaffold_275-1491911889:93064..94306 | Clytia hemisphaerica | exon |
| TCONS_00056399-exon-scaffold_275-1510915933:93064..94306 | TCONS_00056399-exon-scaffold_275-1510915933:93064..94306 | Clytia hemisphaerica | exon |
| TCONS_00056399-exon-scaffold_275-1575043694:93064..94306 | TCONS_00056399-exon-scaffold_275-1575043694:93064..94306 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_275 | supercontig | scaffold_275:93064..94306 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001753 | Crotonase_core_superfam |
| IPR029045 | ClpP/crotonase-like_dom |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0008152 | metabolic process |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003824 | catalytic activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0008152 |
metabolic process |
| molecular_function |
GO:0003824 |
catalytic activity |
Blast
BLAST of TCONS_00056399 vs. Swiss-Prot (Human)
Match: ECI1 (Enoyl-CoA delta isomerase 1, mitochondrial OS=Homo sapiens GN=ECI1 PE=1 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 3.356e-30 Identity = 76/281 (27.05%), Postives = 135/281 (48.04%), Query Frame = 2
Query: 212 ALNRGYRVKYDYDKILRCFTSQLSTNYTFVDIEKRAEKIYSINLRNKPVNALGLEFMVDIANALKELERNDDCKAVMFVSNLE-TFSAGFQSNELLTQDLKRMESFWSTAQNLGLSILKTPLITASAVEGSCIAGGCYFPFLSDISVMSSSDKLRIGIAATRMGIVPPKILLLPLQNLVGFRKAEFYASRSILLKPEEAHKCGMIQTVVPRSEVLKTAINQINLYLQIPESGLLENKRLFNAKILQEIDNESFLKAEVKDFCDRLQEPETQQKMQSHFDKF 1051
AL R R D R F SQ V+ + A + + +N PVN+L LEF+ ++ +L++LE + + V+ S+ FSAG E+ + +W Q L L + ++ L+ SA+ G+C AGGC D +++ + + IG+ T++GI+ P L L+N +G R AE +L P EA + G++ VVP +V TA++ I ++ IP+ K + + + A+V++F + + Q+ +Q + ++
Sbjct: 25 ALGRTERAAGGGDGARR-FGSQ----RVLVEPDAGA-GVAVMKFKNPPVNSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFSAGLDLTEMCGRSPAHYAGYWKAVQELWLRLYQSNLVLVSAINGACPAGGCLVALTCDYRILADNPRYCIGLNETQLGIIAPFWLKDTLENTIGHRAAERALQLGLLFPPAEALQVGIVDQVVPEEQVQSTALSAIAQWMAIPDHARQLTKAMMRKATASRLVTQR--DADVQNFVSFISKDSIQKSLQMYLERL 297
The following BLAST results are available for this feature:
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