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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056428 ID=TCONS_00056428|Name=TCONS_00056428|organism=Clytia hemisphaerica|type=transcript|length=624bp
CTGATACAAAAATAAGGAAACAAAGCattaaaataaagaataacAATGAT
ATCCATAGCAACAAAAAagcttattttcaaattattttgtttttcaattc
tTGTCGTCACTGTTGCTTGTTTTATTGGACTCGTCACCAACAATTTAGGA
TTTGGtttcttttttgcttgtttaaCTTTAGTAAGTGCGGCCATGCTTTA
TATGGTTGTCAAATGGAAATGTATTGGTGGAGATAAGTGTTGGTCACACT
CAAAACCTGATTCTTTATATATGGACCAAGAACCTGATATTGAAAGTCGT
TCATCAGTTTTTACAACCGTTCATCGACATCAAACAGACAATTTTCACCA
TTCAACAAGAACATTAGCTACAATACGACCTTTCACATCTCTTAGAGGGT
TATTTACAACAAGTTCAACAGATGATCTAAACCACAGACCAGATGAACCT
TCACCCTTAACAACCTTAAGAGGTGGCGTAATGAGTGATACGAACTTATT
TATCGGTAATCCGCCACCGTATTCGACATTTGACGGCACGTTACCGTCGT
ATGATCAACTAGAACAGACTGATCGATGTCGCAGTGAAAGCGCAGTACAA
ACGTTTCGTGTTAATGCAATACAC Run BLAST on NCBI protein sequence of TCONS_00056428-protein >TCONS_00056428-protein ID=TCONS_00056428-protein|Name=TCONS_00056428-protein|organism=Clytia hemisphaerica|type=polypeptide|length=193bp
MISIATKKLIFKLFCFSILVVTVACFIGLVTNNLGFGFFFACLTLVSAAM
LYMVVKWKCIGGDKCWSHSKPDSLYMDQEPDIESRSSVFTTVHRHQTDNF
HHSTRTLATIRPFTSLRGLFTTSSTDDLNHRPDEPSPLTTLRGGVMSDTN
LFIGNPPPYSTFDGTLPSYDQLEQTDRCRSESAVQTFRVNAIH Run BLAST on NCBI transcript from alignment at scaffold_276:356602..361211+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056428 ID=TCONS_00056428|Name=TCONS_00056428|organism=Clytia hemisphaerica|type=transcript|length=4610bp|location=Sequence derived from alignment at scaffold_276:356602..361211+ (Clytia hemisphaerica)
CTGATACAAAAATAAGGAAACAAAGCattaaaataaagaataacAATGAT
ATCCATAGCAACAAAAAagcttattttcaaattattttgtttttcaattc
tTGTCGTCACTGTTGCTTGTTTTATTGGACTCGTCACCAACAATTTAGGA
TTTGGtttcttttttgcttgtttaaCTTTAGTAAGTGCGGCCATGCTTTA
TATGGTTGTCAAATGGAAATGTATTGGTGGAGATAAGTGTTGGTCACACT
CAAAACCTGATTCTTTATATATGGACCAAGAACCTGATATTGAAAGTCGT
TCATCAGTTTTTACAACCGTTCATCGACATCAAACAGACAATTTTCACCA
TTCAACAAGAACATTAGCTACAATACGACCTTTCACATCTCTTAGAGGGT
TATTTACAACAAGTTCAACAGATGATCTAAACCACAGACCAGATGAACCT
TCACCCTTAACAACCTTAAGAGGTGGCGTAATGAGTGATACGAACTTATT
TATCGGTAATCCGCCACCGTATTCGACATTTGACGGCACGTTACCGTCGT
ATGATCAACTAGAACAGACTGATCGATGTCGCAGTGAAAGCGCAGTACAA
ACGTTTCGTGTTAATGGTAAGGCTTTTACGGGCAAACTCGAGACCAGTCC
TTAAGTTCACTTTTTGATGATTATGATAGCGCTCACGTCCACCAATAAAA
TCATAGTATACAGTTGaccttctctaattcgatctccaaggggaattgga
tttccaTCGAATAAGgaagcttatcgaataagggagcgtcgtttatgaga
gtttcttgttgacggggactttaaatttcatggAATAATGAAGCGTATGG
AATAATAGAACatcaaattagagagcatcaactgtacgTCCTTGACGGAG
GTCTTATGCTATCTGACAATACCCTAAGCCACATAAAGCTGAATTCAATT
TGGCTAAAGCATAAATGGGGAAAACAgcattatatttaaaaaaaatacct
aCTTACgattaacaatccaaaagttcgcTCAACAgtcaaataccttatcg
gccctttttacgccggcccttattggcatTATTTTTAGGCTCGTGGCGTa
ttaagggccggcgtaaaaggggccggcgtaaaattagggccggcgtaaaa
agggccgataaggtaaatgaaaatttttagctGAAAAAGGGAATTCCCTA
ATATTTCGACAGACTAACCAAACTTGTCGCCTAAACAAGACTGTAAGAGT
TTTTTTTGCGGATAAAGTACCAGCTTGGtctatcttttttcaaaaatggc
ttCAACGCAACACGATctaatttttctcattttggcGCGTTTGATTATTG
AGCGAGCTTTTGGATTGTTAACAGTAAAATGATGTTGtttacaaactttc
aaaacaaaaacggAAAAGATTTACGATTTTACTAATTTCACTAATTACTC
GATGATAACAACTTCCTCTAATCTAAATATCTCGTGATAAAAATATATGG
TCTGAGAAAANGAATGAAATTTCACAGCCAACACATCTTCAATCCTCTTT
ATTGTTATCCTTCATAGTAACGTCTGTTGTACTATGATGGTATCGTAATA
AGATGGTGGGCGTATTGGCGGTCTCGGTGGGCGCTGTGCTTGTGATTGGC
GACTGCTTTCGTGTATTGCTGAAAAGAGAACGAAaaattatcattgtttt
tatttgaaatgtaCAAATTTAAAAGTTACGGAActgcaaaattttgattt
tttggaaaaaaaaacttttttcaacgaGTATTTTCCAGGCTTACACGGCT
GCAAAGGCGATCATTTTCATTCTGATATAGGGCAATAGttaaaaactttt
gatttgCCAAGACCATGTGAAGAACTTGAGCATAAACGCAGCGAAATGTT
GTattaaatgttttaaaaggataaagttttgaggaaatgtcaaatatcat
ttttcgCGAAGCGATAGCTTTTGAAGGCAGTAAAAAACCCTCCGGTAATT
TATTCCAATGACTTAATGTTTTAGAGACATTCCAATTAGTGCATTATGTC
TGCACTAATCGATTTTTAATGAAGCtctaatttgtttttaaaattgcgCA
TATCTGAATTTGTTTTATTGTCTCCAACTTGATAAATGTTAACAAACTTG
TTTTTTTGTCTGAAACATACAATTCTTCTGCCGAAAGTTTAAGTACCTGC
attccgcaaagccttaaacgCCCTTGAACAATTTAAAACTCACATGATCC
GTTTCTTTTTCTAAGCAGGGAATAATTTAGTCATTGACACAATAAAGTTG
TATGCATAGTCCTAGGGTGGGGCGTACTGTATTACCTATCAAAGCCGCCC
CCGGATGCATCCTGCAAAAAGATTCCACTTAGAGGCTCGatcatttacac
gttttttttataagaacatctaagacttttattttgaagccttcgcatgt
tcttaacttgagttttaagcctaaaaatatcttaacatgttcttattttc
accgtcttctgagtatttttgtccattttcctaagaaattgggtctTTTT
GAatccacgaagccttaaaatgttctttatttaatcttagtattttggcc
atcgaagccgtatgatattcttatataatttgttcttcaAACGTGATTGC
AGCTAAAGAGTTCAGGCCTGAAGATGCAGTGCTATTGAAacgaggaaaaa
aataatatttttatttcgttttttattaggcttctgctcatcctctagcg
aaaagagtttcttatagagTTTTTTAAATCAGTATTGAGGTTTTTCCTAG
TAATATCGTAACCTGGggagtactaggtttgcgaggtaaCGGTGTCCAag
ccaaaattcgaaaatcgaCCATTAgagaaaagaaaggaaaaattggcgtt
tttgggacccttagagatTTTTGTCcgaatttttttgagaaagaaaattt
tgaagccgCCCCCGGATGCATCCTGCAAAAAGATTCCACTTAGAGGCTCG
atcatttacacgttttttttataagaacatctaagacttttattttgaag
ccttcgcatgttcttaacttgagttttaagcctaaaaatatcttaacatg
ttcttattttcaccgtcttctgagtatttttgtccattttcctaagaaat
tgggtctTTTTGAatccacgaagccttaaaatgttctttatttaatctta
gtattttggccatcgaagccgtatgatattcttatataatttgttcttaa
aaaaaaaacgtgtaaatgatCGAGCCTCTAAGTGGAATCTTTTTGCAGGA
TGCATCCGGGGGcggcttcaaaattttctttctcaaaaaaattcgGACAA
AAatctctaagggtcccaaaaacgccaatttttcctttcttttctcTAAT
GGtcgattttcgaattttggctTGGACACCGttacctcgcaaacctagta
ctccCCAGGTTACGATATTACTAGGAAAAACCTCAATACTGATTTAAAAA
Actctataagaaactcttttcgctagaggatgagcagaagcctaataaaa
aacgaaataaaaatattatttttttcctcgtTTCAATAGCACTGCATCTT
CAGGCCTGAACTCTTTAGCTGCAATCACGTTtgaagaacaaattatataa
gaatatcatacggcttcgatggccaaaatactaagattaaataaagaaca
ttttaaggcttcgtggatTCAAAAagacccaatttcttaggaaaatggac
aaaaatactcagaagacggtgaaaataagaacatgttaagatatttttag
gcttaaaactcaagttaagaacatgcgaaggcttcaaaataaaagtctta
gatgttcttataaaaaaaacgtgtaaatgatCGAGCCTCTAAGTGGAATC
TTTTTGCAGGATGCATCCGGGGGCGGCTTTGATAGGTAATACAGTACGCC
CCACCCTAGGACTATGCATACAACTTTATTGTGTCAATGACTAAATTATT
CCCTGCTTAGAAAAAGAAACGGATCATGTGAGTTTTAAATTGTTCAAGGG
cgtttaaggctttgcggaatGCAGGTACTTAAACTTTCGGCAGAAGAATT
GTATGTTTCAGACAAAAAAACAAGTTTGTTAACATTTATCAAGTTGGAGA
CAATAAAACAAATTCAGATATGcgcaattttaaaaacaaattagaGCTTC
ATTAAAAATCGATTAGTGCAGACATAATGCACTAATTGGAATGTCTCTAA
AACATTAAGTCATTGGAATAAATTACCGGAGGGTTTTTTACTGCCTTCAA
AAGCTATCGCTTCGcgaaaaatgatatttgacatttcctcaaaactttat
ccttttaaaacatttaatACAACATTTCGCTGCGTTTATGCTCAAGTTCT
TCACATGGTCTTGGcaaatcaaaagtttttaaCTATTGCCCTATATCAGA
ATGAAAATGATCGCCTTTGCAGCCGTGTAAGCCTGGAAAATACtcgttga
aaaaagtttttttttccaaaaaatcaaaattttgcagTTCCGTAACTTTT
AAATTTGtacatttcaaataaaaacaatgataatttTTCGTTCTCTTTTC
AGCAATACAC Coding sequence (CDS) from alignment at scaffold_276:356602..361211+ >TCONS_00056428 ID=TCONS_00056428|Name=TCONS_00056428|organism=Clytia hemisphaerica|type=CDS|length=1158bp|location=Sequence derived from alignment at scaffold_276:356602..361211+ (Clytia hemisphaerica)
ATGATATCCATAGCAACAAAAAagcttattttcaaattattttgtttttc
aattctTGTCGTCACTGTTGCTTGTTTTATTGGACTCGTCACCAACAATT
TAGGATTTGGtttcttttttgcttgtttaaCTTTAGTAAGTGCGGCCATG
CTTTATATGGTTGTCAAATGGAAATGTATTGGTGGAGATAAGTGTTGGTC
ACACTCAAAACCTGATTCTTTATATATGGACCAAGAACCTGATATTGAAA
GTCGTTCATCAGTTTTTACAACCGTTCATCGACATCAAACAGACAATTTT
CACCATTCAACAAGAACATTAGCTACAATACGACCTTTCACATCTCTTAG
AGGGTTATTTACAACAAGTTCAACAGATGATCTAAACCACAGACCAGATG
AACCTTCACCCTTAACAACCTTAAGAGGTGGCGTAATGAGTGATACGAAC
TTATTTATCGGTAATCCGCCACCGTATTCGACATTTGACGGCACGTTACC
GTCGTATGATCAACTAGAACAGACTGATCGATGTCGCAGTGAAAGCGCAG
TACAAACGTTTCGTGTTAATGCAATACACATGATATCCATAGCAACAAAA
AagcttattttcaaattattttgtttttcaattctTGTCGTCACTGTTGC
TTGTTTTATTGGACTCGTCACCAACAATTTAGGATTTGGtttcttttttg
cttgtttaaCTTTAGTAAGTGCGGCCATGCTTTATATGGTTGTCAAATGG
AAATGTATTGGTGGAGATAAGTGTTGGTCACACTCAAAACCTGATTCTTT
ATATATGGACCAAGAACCTGATATTGAAAGTCGTTCATCAGTTTTTACAA
CCGTTCATCGACATCAAACAGACAATTTTCACCATTCAACAAGAACATTA
GCTACAATACGACCTTTCACATCTCTTAGAGGGTTATTTACAACAAGTTC
AACAGATGATCTAAACCACAGACCAGATGAACCTTCACCCTTAACAACCT
TAAGAGGTGGCGTAATGAGTGATACGAACTTATTTATCGGTAATCCGCCA
CCGTATTCGACATTTGACGGCACGTTACCGTCGTATGATCAACTAGAACA
GACTGATCGATGTCGCAGTGAAAGCGCAGTACAAACGTTTCGTGTTAATG
CAATACAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056428-exon-scaffold_276-1491911889:356602..357217 | TCONS_00056428-exon-scaffold_276-1491911889:356602..357217 | Clytia hemisphaerica | exon |
| TCONS_00056428-exon-scaffold_276-1510915933:356602..357217 | TCONS_00056428-exon-scaffold_276-1510915933:356602..357217 | Clytia hemisphaerica | exon |
| TCONS_00056428-exon-scaffold_276-1575043694:356602..357217 | TCONS_00056428-exon-scaffold_276-1575043694:356602..357217 | Clytia hemisphaerica | exon |
| TCONS_00056428-exon-scaffold_276-1491911889:361204..361211 | TCONS_00056428-exon-scaffold_276-1491911889:361204..361211 | Clytia hemisphaerica | exon |
| TCONS_00056428-exon-scaffold_276-1510915933:361204..361211 | TCONS_00056428-exon-scaffold_276-1510915933:361204..361211 | Clytia hemisphaerica | exon |
| TCONS_00056428-exon-scaffold_276-1575043694:361204..361211 | TCONS_00056428-exon-scaffold_276-1575043694:361204..361211 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_276 | supercontig | scaffold_276:356602..361211 + |
Blast
The following BLAST results are available for this feature:
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