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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056433 ID=TCONS_00056433|Name=TCONS_00056433|organism=Clytia hemisphaerica|type=transcript|length=542bp
GCCAAGTCACGTCCAATCTACTCAACAAATAGCAACAACTTACTCTTCAA
ATGAAAGAATATCACCCACTTCCGCTTATCCGAATcaaatcatgacgtca
tcactagGGACTAGTCCTCATTACCCTACGCAAACAACCAAAACAATGAC
CACAAACCCGACAGAGCAACCTTATGGCTGTCAAACAACAAAATCAATGC
AACCTGCAGTTAGAGGTATCAATTCAACAACTACAAATGATGATTTCTTT
GGACTTGGCAAAAATACAATGGTTATCATCACCTTATCGAGCCTGGCTAT
AACATTGATAGCGTTGATAGTGGTCGTTATTCTACTCAGGAAAAGtgcga
aactggaaaagaaaatcaatttgttgaCTGGTGTTCCTTCGTCACGGAAA
AATGGGAGAACAAGTACATTTCACATGGAAAATGTTATCGAAAATCAAGC
TACCGAAGGCAAGATGTAGTGAAGAAATATGATGCAAGACATACGGACat
ttaattttaacaaattttaaaaCCAGATTCATTCGAACAAGC Run BLAST on NCBI protein sequence of TCONS_00056433-protein >TCONS_00056433-protein ID=TCONS_00056433-protein|Name=TCONS_00056433-protein|organism=Clytia hemisphaerica|type=polypeptide|length=155bp
PSHVQSTQQIATTYSSNERISPTSAYPNQIMTSSLGTSPHYPTQTTKTMT
TNPTEQPYGCQTTKSMQPAVRGINSTTTNDDFFGLGKNTMVIITLSSLAI
TLIALIVVVILLRKSAKLEKKINLLTGVPSSRKNGRTSTFHMENVIENQA
TEGKM Run BLAST on NCBI transcript from alignment at scaffold_276:419944..422606+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056433 ID=TCONS_00056433|Name=TCONS_00056433|organism=Clytia hemisphaerica|type=transcript|length=2663bp|location=Sequence derived from alignment at scaffold_276:419944..422606+ (Clytia hemisphaerica)
GCCAAGTCACGTCCAATCTACTCAACAAATAGCAACAACTTACTCTTCAA
ATGAAAGAATATCACCCACTTCCGCTTATCCGAATcaaatcatgacgtca
tcactagGGACTAGTCCTCATTACCCTACGCAAACAACCAAAACAATGAC
CACAAACCCGACAGAGCAACCTTATGGCTGTCAAACAACAAAATCAATGC
AACCTGCAGTTAGAGGTATCAATTCAACAACTACAAATGATGATTTCTTT
GGACTTGGCAAAAATACAATGGTTATCATCACCTTATCGAGCCTGGCTAT
AACATTGATAGCGTTGATAGTGGTCGTTATTCTACTCAGGAAAAGGTAAA
AGGAAacagggggggtcagtgtaccagaaggcggcatgtatcctggggtg
ggtgtttgagaaaaaaatttgtcatgtactacctgtgtactataattggg
gtgttaggtccaaaatcgattttgaattttactacctgtgtaccaaaata
ggggtgttgggtctaaaatcgatgttaacagtatggaaacaaaaaggttc
agaaattatctgctaaaatagaaatgtaaagttgttctattataaattga
tcaagccaagtttgtccaagatcattcttccaaacttcttggaatgattt
taaatcctaccagatcccactgaaatgaaggtttatcgagtcaatcgagt
aaacattcgaacattcaaattcaaacattcgaacattcgaattcaaacat
tcaaacatcagaggtgccaactctcacgcattggggtgtgagactcacgc
atttccacatggtctcacacaattttagaaaagtttgatttctcacgcat
ttaggatttttgagaaaatttttcctgtttttccgacttttggaaaaaag
ttttcctgatttcccgattttccgaaaaaaatttcctagGTAATACCGGG
TAGTAAatgggggtatggggtggttttggtttttttccaggtactacccg
gtagtaaatagggggtatggggtggttttgggNggtggttttggtttttt
tccaggtactacccggtagtaaatagggggtatggggtggttttgggatt
tttccatgtagtatggtgtacttcaggggtgggtgtgtgtcaagttttga
aaaataccttgaagTACACGTACATGCTGCCTtctagtacactgaccccc
ccctCAAGGAACAACAAAATATCTTTCACTAAAAGCTTGAAGAAATTAAG
ACGATTTAAACattaaaacataaaatacatgtttttttataagaaccagt
aagtttggctcaggctgggctgttcttcacttttggaaatttcgaagact
taaaaatgttcttatgatgttcttagtACGCTTAGTttaattaaaactta
aaaacggTTTTAAGATCTGTTAGAATTTGTACTTTCTTAGTATTTTCTGT
AATCTGAGGCTTAGGAATGTTCTTAAATTACTCTTAAGCCAATTTCCgtc
tcgtgttcttataaaatcgtTCTTAAAATAAATAAGCGTGTGCAGTAATA
GAAAATTAAACTACAGTATGACTTTCTGAAGAAGGAGCTCAAATtgctat
tttcttatttggatTGAAAACGGTGCACCTCGTATCACAGACCAACAGAC
AAGAACCGCCTGACTTTTTATCCCAATAGCAAAACTCACTGACCTCTGAT
CTAATATATGAAAGTATCGTCAGATATTCCCGTACATTCGCGCTGTATTT
ATGATTTtgtataaaataatttaaaatctgCCACCATCAAATATATAGGT
GATTTTATTAGCATGTAGCTCCTTTATTTCACCACAATCGTTGCCCGGGG
GGGGTaatacccttgtcgaccgacgggggtgttCNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNCCCCCCCCCCTCCGGGAACCGTTGGCTAAGGAATTCTCACTAGGT
CACTGTGGACAAGATTATTAGAAGCCTCCTCCAAACTTGAAGCGATTATT
CGAAGTCGATTATTAAGAAAGTCAGATCATGCTTCTTTCAGGCTAAAAAA
CTGAAGTTTTCAGGTGTAAAGCACAAGACTACAAAACCGAGcacatttct
ttttgtttcattttagtgcgaaactggaaaagaaaatcaatttgttgaCT
GGTGTTCCTTCGTCACGGAAAAATGGGAGAACAAGTACATTTCACATGGA
AAATGTTATCGAAAATCAAGCTACCGAAGGCAAGATGTAGTGAAGAAATA
TGATGCAAGACATACGGACatttaattttaacaaattttaaaaCCAGATT
CATTCGAACAAGC Coding sequence (CDS) from alignment at scaffold_276:419944..422606+ >TCONS_00056433 ID=TCONS_00056433|Name=TCONS_00056433|organism=Clytia hemisphaerica|type=CDS|length=936bp|location=Sequence derived from alignment at scaffold_276:419944..422606+ (Clytia hemisphaerica)
CCAAGTCACGTCCAATCTACTCAACAAATAGCAACAACTTACTCTTCAAA
TGAAAGAATATCACCCACTTCCGCTTATCCGAATcaaatcatgacgtcat
cactagGGACTAGTCCTCATTACCCTACGCAAACAACCAAAACAATGACC
ACAAACCCGACAGAGCAACCTTATGGCTGTCAAACAACAAAATCAATGCA
ACCTGCAGTTAGAGGTATCAATTCAACAACTACAAATGATGATTTCTTTG
GACTTGGCAAAAATACAATGGTTATCATCACCTTATCGAGCCTGGCTATA
ACATTGATAGCGTTGATAGTGGTCGTTATTCTACTCAGGAAAAGtgcgaa
actggaaaagaaaatcaatttgttgaCTGGTGTTCCTTCGTCACGGAAAA
ATGGGAGAACAAGTACATTTCACATGGAAAATGTTATCGAAAATCAAGCT
ACCGAAGGCAAGATGTAGCCAAGTCACGTCCAATCTACTCAACAAATAGC
AACAACTTACTCTTCAAATGAAAGAATATCACCCACTTCCGCTTATCCGA
ATcaaatcatgacgtcatcactagGGACTAGTCCTCATTACCCTACGCAA
ACAACCAAAACAATGACCACAAACCCGACAGAGCAACCTTATGGCTGTCA
AACAACAAAATCAATGCAACCTGCAGTTAGAGGTATCAATTCAACAACTA
CAAATGATGATTTCTTTGGACTTGGCAAAAATACAATGGTTATCATCACC
TTATCGAGCCTGGCTATAACATTGATAGCGTTGATAGTGGTCGTTATTCT
ACTCAGGAAAAGtgcgaaactggaaaagaaaatcaatttgttgaCTGGTG
TTCCTTCGTCACGGAAAAATGGGAGAACAAGTACATTTCACATGGAAAAT
GTTATCGAAAATCAAGCTACCGAAGGCAAGATGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056433-exon-scaffold_276-1491911889:419944..420288 | TCONS_00056433-exon-scaffold_276-1491911889:419944..420288 | Clytia hemisphaerica | exon |
| TCONS_00056433-exon-scaffold_276-1510915933:419944..420288 | TCONS_00056433-exon-scaffold_276-1510915933:419944..420288 | Clytia hemisphaerica | exon |
| TCONS_00056433-exon-scaffold_276-1575043694:419944..420288 | TCONS_00056433-exon-scaffold_276-1575043694:419944..420288 | Clytia hemisphaerica | exon |
| TCONS_00056433-exon-scaffold_276-1491911889:422410..422606 | TCONS_00056433-exon-scaffold_276-1491911889:422410..422606 | Clytia hemisphaerica | exon |
| TCONS_00056433-exon-scaffold_276-1510915933:422410..422606 | TCONS_00056433-exon-scaffold_276-1510915933:422410..422606 | Clytia hemisphaerica | exon |
| TCONS_00056433-exon-scaffold_276-1575043694:422410..422606 | TCONS_00056433-exon-scaffold_276-1575043694:422410..422606 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_276 | supercontig | scaffold_276:419944..422606 + |
Blast
The following BLAST results are available for this feature:
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