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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056437 ID=TCONS_00056437|Name=TCONS_00056437|organism=Clytia hemisphaerica|type=transcript|length=2624bp
tgcaaCTCTTAGATACTATAAAATCTTCCCACGCTATATTTTGTAATCCC
TTCGTATCTCAACGTTttcaacatatttttttctttttttctttctagat
gTTTTGAACGTAGCAAAGAAAAGATACCCACACTTATGTTCGCACTTCAA
CAAGATGGAAAAGTTACTGCTCGGCGTCCAAGCTGATTCTGAAAACGTGG
TCATATCGCACGAAGATTTCACCTTCCTCGCACAAAAAGCTGACGAAAAA
CAGACCTTTTTACCGCCCACCGCCCAAGTAGCCGCCCAGGAGGGTAAGTA
CCTTGGTAAACTTTTAAGCAAAGTTGAATTATCTACCGCTGACCTGAAGA
ATGTTGACCCTTTCCAATATAATCATCTCGGCTCGTTTGCGTACGTGGGT
GATAACCGTGCCGTTTTGGAGCTACCTATTTTAGGTTCGTTCAAGGGTTG
GTCGGCTATGTGGCTATGGCGTGGCGCGTACGCAAGTGAATGCGTTAGTC
TGCGGATGCGTACTCTTGTGTTGTTTGATTGGATAAAATCGTTCTTGTTT
GGTCGTGATACATCGAGAATCTGATTCCTCTATAATGAACAATTAGATGC
AAATTGTTTCCAATCCAATTCAATTCGATGTTGTTGAACACTATTTGAGA
AAGTGCTCAGCGAATTCACAAATTCATAAAATTGTGAATTGAATTTGTAA
TTTTAAACCACTTTTTCGGAGTATAATGGTTTGATCATTATGCGTCTGGT
GGTTACAATGCATAACTTTTAGGTATCTATTTGTTTATTAAATTGTCGGA
CTCTCCTGCACGTACAAATTATTTGGAActttagcttcagttttctcTTG
CACTGTTATATCATTTTAATCTTTAGGACAGGAATAGCAATGGTTCTGTC
TTTTACCACTGAATTCACTTGATACTAAACTTTTAGTGAGAAAAAATCAC
ACTTTGCAGAAGATTTAAAGTTAATTCGAAACATTTCGTCTCAGGCCTTT
TTTTTCCCCCTCTTTCATATTAATGAAACAACGTCTTTTTTAATGCAAAC
TTCAAATCCATAACAAGATGGTGCATTGGCTAACCATGTCCAAAATCAGc
gtttgattttagcaaaacaTACACATGTGAGTCTCGAGATGAACATTGGG
ATGTTCCAATTTCCATACAtgtggggtggacgaacctttcttaaggcaaa
aaaaggttttttagaaatgtgatgataccccctggaaaatggcaaaattt
gcaaaagaagtcttggaaaaattattttcataccttaaaagtaAGCGTGG
ACAAACAAAAacggaaattttagaataaccttTTACCTAccgggaaaatg
aaaaaataccccctggaaatacTTCTCCGATTACCACCTGGAAATGTTcc
tccaccccctgtatggatataaaatggaatggcccacttttatacatatt
tttttccCACGAGAAATGCAATGCACCaaattttcgaagattttttagaa
aattattacaatagaattctgAATGAtaattgaaatggaaattttaattt
tgtgttTTCGTGGATTTTTACCATTTTCGCGAATATAAATCTCGCGAAAT
TGAATCCAcgcgaaatatgaaaaaaaacaaattggtATCCTAAAAGAaca
tgtaatatttttttttggccgTTTTAGATTTTcgcctgattcgcgaaatt
aaaaaaagaattaatgaACATAAATTCGGGAAATTTCTTGGTTTTTTTTG
ACTGACGAAATTAAATCTCACGgaaattaatcccattaattAAGGAGGTC
ATCGACCCTTAGAgacccttttttgaaaaacactgttCTGCAAAgttatt
taaagtttttttggtccaaattgATAGTATATactgtaaataaaaaattc
cgacaatttttttcaaaatggcaccCCGTTGCTAGGGGCTACGGCCCAGG
CAACCCGGAAAAATGGAAACTTTGCGACATTTTTTCGCAAGTTAGCTTTA
GAATTAGAAGTTGAAACTTGGCAGGATTGTTACTTGGATGAAACTCtatg
aaatgaatgaaaaaatcttttctgtATAGCAACGGTTGCTATGGAAACTA
GAAAATCATGTTTTCCCTAGTTACCATGGCAACGGTTGCtaagggaaaaa
aatttttcatccaTTTCATAGACTTTCATCCAAGGAGCAATCCTGCCAAG
TTTCAACTTTTAACTTCCAACCtatcttgagaaaaaatgtcGCAACCGcc
aattttcaccaaattcGACATTTTGAGAAAACATGCGGTAAAGTTAGAAA
TCACTGCTCCAATAAGGAAAATAGCTTTATACGTAGTTTCTTTTGCTAAT
TTTAGTTGATTTACAAATACTTTAAATCATTTCAATAGAATGATTGGTTA
AACTGACTCAACTGGGACATTTTGGCCGATTTAAGCAATCTGAGGTGCAT
CCTCAAAAAAGCCTGCAGTTGCGCAAGAATTGCCGCAAAACAGTTTAAAA
GGGTACAAggagcaaaaatttttgctttgttCACTTCAATAATGATTTGA
ATCTATCCAAGAGAAAAAGACCAAAAAGTCAACTGTATTTGTCCAAATGC
TGCCTTGAAATTCCCAGTGTTTTG Run BLAST on NCBI protein sequence of TCONS_00056437-protein >TCONS_00056437-protein ID=TCONS_00056437-protein|Name=TCONS_00056437-protein|organism=Clytia hemisphaerica|type=polypeptide|length=139bp
MEKLLLGVQADSENVVISHEDFTFLAQKADEKQTFLPPTAQVAAQEGKYL
GKLLSKVELSTADLKNVDPFQYNHLGSFAYVGDNRAVLELPILGSFKGWS
AMWLWRGAYASECVSLRMRTLVLFDWIKSFLFGRDTSRI Run BLAST on NCBI transcript from alignment at scaffold_276:595642..598746+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056437 ID=TCONS_00056437|Name=TCONS_00056437|organism=Clytia hemisphaerica|type=transcript|length=3105bp|location=Sequence derived from alignment at scaffold_276:595642..598746+ (Clytia hemisphaerica)
tgcaaCTCTTAGATACTATAAAATCTTCCCACGCTATATTTTGTAATCCC
TTCGTATCTCAACGTTttcaacatatttttttctttttttctttctagat
gTTTTGAACGTAGCAAAGAAAAGATACCCACACTTATGTTCGCACTTCAA
CAAGATGGAAAAGTAGGGACTTTTGGCTCAATTTTCACTCTACTAAAACT
TAAGCGGATTAACTTAAGGAAGCATTTTTACTTAACACTTAATAGAGAGA
ATATTTGATTACAGTAAAAAGCCATCATACCATAGGCTTgcaaaacaata
ataaaacgGATCATTTGCTAGCTACCCTACccaaatttctatcatttttt
aaagttgttttgtttttatattctaTTCGCCTTTTCCCATGTCCTCCTAA
ATTTTAGTTGagactctctaattcgacgttcttctATTCGATACGTTCCA
TTGATCGATAATATTTAAACTCACCgtcaacaaaaaactctcataaacga
cgctccattattcgacaCATTCCCTTATTGGATgaaattcgaattagaaa
gcTTCAACTGTATACTCCATTCGCCTTTTCCAATGTCCTAAATGACTTAC
TTCAAAACACTCTGTTAAAAtaatacttttcaaattttgttagGTTACTG
CTCGGCGTCCAAGCTGATTCTGAAAACGTGGTCATATCGCACGAAGATTT
CACCTTCCTCGCACAAAAAGCTGACGAAAAACAGACCTTTTTACCGCCCA
CCGCCCAAGTAGCCGCCCAGGAGGGTAAGTACCTTGGTAAACTTTTAAGC
AAAGTTGAATTATCTACCGCTGACCTGAAGAATGTTGACCCTTTCCAATA
TAATCATCTCGGCTCGTTTGCGTACGTGGGTGATAACCGTGCCGTTTTGG
AGCTACCTATTTTAGGTTCGTTCAAGGGTTGGTCGGCTATGTGGCTATGG
CGTGGCGCGTACGCAAGTGAATGCGTTAGTCTGCGGATGCGTACTCTTGT
GTTGTTTGATTGGATAAAATCGTTCTTGTTTGGTCGTGATACATCGAGAA
TCTGATTCCTCTATAATGAACAATTAGATGCAAATTGTTTCCAATCCAAT
TCAATTCGATGTTGTTGAACACTATTTGAGAAAGTGCTCAGCGAATTCAC
AAATTCATAAAATTGTGAATTGAATTTGTAATTTTAAACCACTTTTTCGG
AGTATAATGGTTTGATCATTATGCGTCTGGTGGTTACAATGCATAACTTT
TAGGTATCTATTTGTTTATTAAATTGTCGGACTCTCCTGCACGTACAAAT
TATTTGGAActttagcttcagttttctcTTGCACTGTTATATCATTTTAA
TCTTTAGGACAGGAATAGCAATGGTTCTGTCTTTTACCACTGAATTCACT
TGATACTAAACTTTTAGTGAGAAAAAATCACACTTTGCAGAAGATTTAAA
GTTAATTCGAAACATTTCGTCTCAGGCCTTTTTTTTCCCCCTCTTTCATA
TTAATGAAACAACGTCTTTTTTAATGCAAACTTCAAATCCATAACAAGAT
GGTGCATTGGCTAACCATGTCCAAAATCAGcgtttgattttagcaaaaca
TACACATGTGAGTCTCGAGATGAACATTGGGATGTTCCAATTTCCATACA
tgtggggtggacgaacctttcttaaggcaaaaaaaggttttttagaaatg
tgatgataccccctggaaaatggcaaaatttgcaaaagaagtcttggaaa
aattattttcataccttaaaagtaAGCGTGGACAAACAAAAacggaaatt
ttagaataaccttTTACCTAccgggaaaatgaaaaaataccccctggaaa
tacTTCTCCGATTACCACCTGGAAATGTTcctccaccccctgtatggata
taaaatggaatggcccacttttatacatatttttttccCACGAGAAATGC
AATGCACCaaattttcgaagattttttagaaaattattacaatagaattc
tgAATGAtaattgaaatggaaattttaattttgtgttTTCGTGGATTTTT
ACCATTTTCGCGAATATAAATCTCGCGAAATTGAATCCAcgcgaaatatg
aaaaaaaacaaattggtATCCTAAAAGAacatgtaatatttttttttggc
cgTTTTAGATTTTcgcctgattcgcgaaattaaaaaaagaattaatgaAC
ATAAATTCGGGAAATTTCTTGGTTTTTTTTGACTGACGAAATTAAATCTC
ACGgaaattaatcccattaattAAGGAGGTCATCGACCCTTAGAgaccct
tttttgaaaaacactgttCTGCAAAgttatttaaagtttttttggtccaa
attgATAGTATATactgtaaataaaaaattccgacaatttttttcaaaat
ggcaccCCGTTGCTAGGGGCTACGGCCCAGGCAACCCGGAAAAATGGAAA
CTTTGCGACATTTTTTCGCAAGTTAGCTTTAGAATTAGAAGTTGAAACTT
GGCAGGATTGTTACTTGGATGAAACTCtatgaaatgaatgaaaaaatctt
ttctgtATAGCAACGGTTGCTATGGAAACTAGAAAATCATGTTTTCCCTA
GTTACCATGGCAACGGTTGCtaagggaaaaaaatttttcatccaTTTCAT
AGACTTTCATCCAAGGAGCAATCCTGCCAAGTTTCAACTTTTAACTTCCA
ACCtatcttgagaaaaaatgtcGCAACCGccaattttcaccaaattcGAC
ATTTTGAGAAAACATGCGGTAAAGTTAGAAATCACTGCTCCAATAAGGAA
AATAGCTTTATACGTAGTTTCTTTTGCTAATTTTAGTTGATTTACAAATA
CTTTAAATCATTTCAATAGAATGATTGGTTAAACTGACTCAACTGGGACA
TTTTGGCCGATTTAAGCAATCTGAGGTGCATCCTCAAAAAAGCCTGCAGT
TGCGCAAGAATTGCCGCAAAACAGTTTAAAAGGGTACAAggagcaaaaat
ttttgctttgttCACTTCAATAATGATTTGAATCTATCCAAGAGAAAAAG
ACCAAAAAGTCAACTGTATTTGTCCAAATGCTGCCTTGAAATTCCCAGTG
TTTTG Coding sequence (CDS) from alignment at scaffold_276:595642..598746+ >TCONS_00056437 ID=TCONS_00056437|Name=TCONS_00056437|organism=Clytia hemisphaerica|type=CDS|length=840bp|location=Sequence derived from alignment at scaffold_276:595642..598746+ (Clytia hemisphaerica)
ATGGAAAAGTTACTGCTCGGCGTCCAAGCTGATTCTGAAAACGTGGTCAT
ATCGCACGAAGATTTCACCTTCCTCGCACAAAAAGCTGACGAAAAACAGA
CCTTTTTACCGCCCACCGCCCAAGTAGCCGCCCAGGAGGGTAAGTACCTT
GGTAAACTTTTAAGCAAAGTTGAATTATCTACCGCTGACCTGAAGAATGT
TGACCCTTTCCAATATAATCATCTCGGCTCGTTTGCGTACGTGGGTGATA
ACCGTGCCGTTTTGGAGCTACCTATTTTAGGTTCGTTCAAGGGTTGGTCG
GCTATGTGGCTATGGCGTGGCGCGTACGCAAGTGAATGCGTTAGTCTGCG
GATGCGTACTCTTGTGTTGTTTGATTGGATAAAATCGTTCTTGTTTGGTC
GTGATACATCGAGAATCTGAATGGAAAAGTTACTGCTCGGCGTCCAAGCT
GATTCTGAAAACGTGGTCATATCGCACGAAGATTTCACCTTCCTCGCACA
AAAAGCTGACGAAAAACAGACCTTTTTACCGCCCACCGCCCAAGTAGCCG
CCCAGGAGGGTAAGTACCTTGGTAAACTTTTAAGCAAAGTTGAATTATCT
ACCGCTGACCTGAAGAATGTTGACCCTTTCCAATATAATCATCTCGGCTC
GTTTGCGTACGTGGGTGATAACCGTGCCGTTTTGGAGCTACCTATTTTAG
GTTCGTTCAAGGGTTGGTCGGCTATGTGGCTATGGCGTGGCGCGTACGCA
AGTGAATGCGTTAGTCTGCGGATGCGTACTCTTGTGTTGTTTGATTGGAT
AAAATCGTTCTTGTTTGGTCGTGATACATCGAGAATCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056437-exon-scaffold_276-1491911889:595642..595803 | TCONS_00056437-exon-scaffold_276-1491911889:595642..595803 | Clytia hemisphaerica | exon |
| TCONS_00056437-exon-scaffold_276-1510915933:595642..595803 | TCONS_00056437-exon-scaffold_276-1510915933:595642..595803 | Clytia hemisphaerica | exon |
| TCONS_00056437-exon-scaffold_276-1575043694:595642..595803 | TCONS_00056437-exon-scaffold_276-1575043694:595642..595803 | Clytia hemisphaerica | exon |
| TCONS_00056437-exon-scaffold_276-1491911889:596285..598746 | TCONS_00056437-exon-scaffold_276-1491911889:596285..598746 | Clytia hemisphaerica | exon |
| TCONS_00056437-exon-scaffold_276-1510915933:596285..598746 | TCONS_00056437-exon-scaffold_276-1510915933:596285..598746 | Clytia hemisphaerica | exon |
| TCONS_00056437-exon-scaffold_276-1575043694:596285..598746 | TCONS_00056437-exon-scaffold_276-1575043694:596285..598746 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_276 | supercontig | scaffold_276:595642..598746 + |
Blast
The following BLAST results are available for this feature:
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