TCONS_00056462 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056462
Unique NameTCONS_00056462
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length458

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056462 ID=TCONS_00056462|Name=TCONS_00056462|organism=Clytia hemisphaerica|type=transcript|length=458bp
GTATTATTGCGATCTGTGATATAGACTAAAGGAGATAGAGACAtaaaatt
ctaaatattttcTACTTTAAAACAGTCCCTCGTGCATGTCAATGATACCA
caatgatATGGACGATATATTCTTCGACTTACAAGAATAAAGAAGGTTGA
GATCATAACAAAAGCAATAACGGGTGAAACATATATAGTGTTCTCGTAAA
TCCATGAAGCTGCGAAAAAGGCCAGTACAGAAAACACTCGTGTTACTGTA
CTCCGAAAACCATCCGAGAAGCTAGCATGATCAGGTGGTACCATTTGAAA
TAACAGAGCTCTTGCTAAAACTGCAATTGTCAATCCAGTGACAGAGTTCA
ATAATATGCTAACAACCATCTGTATTTCCTGCCAGTAAATATTATATATC
GGGTACAGTTTAGGTAGCATTAAAATTAAAACACACATTGCATGTAGCAA
GAACNCTA
Run BLAST on NCBI

transcript from alignment at scaffold_276:796287..796903+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056462 ID=TCONS_00056462|Name=TCONS_00056462|organism=Clytia hemisphaerica|type=transcript|length=617bp|location=Sequence derived from alignment at scaffold_276:796287..796903+ (Clytia hemisphaerica)
GTATTATTGCGATCTGTGATATAGACTAAAGGAGATAGAGACAtaaaatt
ctaaatattttcTACTTTAAAACAGTCCCTCGTGCATGTCAATGATACCA
caatgatatgcaccattgtgcAATAtgttctgacattacatcacggatcc
aatggctgattggttgtaagtgacgtaaaatcagtcaatacgtcactttc
aaccaatcagctgttaggTCCATGGAAGAAATTgcacaatggtgcatatc
atgaattatcacGTACATGGACGATATATTCTTCGACTTACAAGAATAAA
GAAGGTTGAGATCATAACAAAAGCAATAACGGGTGAAACATATATAGTGT
TCTCGTAAATCCATGAAGCTGCGAAAAAGGCCAGTACAGAAAACACTCGT
GTTACTGTACTCCGAAAACCATCCGAGAAGCTAGCATGATCAGGTGGTAC
CATTTGAAATAACAGAGCTCTTGCTAAAACTGCAATTGTCAATCCAGTGA
CAGAGTTCAATAATATGCTAACAACCATCTGTATTTCCTGCCAGTAAATA
TTATATATCGGGTACAGTTTAGGTAGCATTAAAATTAAAACACACATTGC
ATGTAGCAAGAACNCTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035576XLOC_035576Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056462-exon-scaffold_276-1491911889:796287..796393TCONS_00056462-exon-scaffold_276-1491911889:796287..796393Clytia hemisphaericaexon
TCONS_00056462-exon-scaffold_276-1510915933:796287..796393TCONS_00056462-exon-scaffold_276-1510915933:796287..796393Clytia hemisphaericaexon
TCONS_00056462-exon-scaffold_276-1575043694:796287..796393TCONS_00056462-exon-scaffold_276-1575043694:796287..796393Clytia hemisphaericaexon
TCONS_00056462-exon-scaffold_276-1491911889:796553..796903TCONS_00056462-exon-scaffold_276-1491911889:796553..796903Clytia hemisphaericaexon
TCONS_00056462-exon-scaffold_276-1510915933:796553..796903TCONS_00056462-exon-scaffold_276-1510915933:796553..796903Clytia hemisphaericaexon
TCONS_00056462-exon-scaffold_276-1575043694:796553..796903TCONS_00056462-exon-scaffold_276-1575043694:796553..796903Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_276supercontigscaffold_276:796287..796903 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.138941	0.322648	0.315661	0.768574	0.303669	0	0	0.240132	0.297442	0	0	8.33884	8.75838	1.4563	1.64965	0	0.438522	4.39235	5.23025	0	0	0.326732	0.594093	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056462 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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