TCONS_00056466 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056466
Unique NameTCONS_00056466
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1429

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056466 ID=TCONS_00056466|Name=TCONS_00056466|organism=Clytia hemisphaerica|type=transcript|length=1429bp
GTTCAATTGACAGATACTTAAGGAGCCGACATGAAGTGGTTTATCATATT
GACAAGTTTCATTTTGTGTGCACGTGCCATCGAAGATGACAGTTATATGG
ATTACATGAGTAGAAGATCACACTCCTGGCCGCTTCCCAATCGACGGGAG
TTCGGAAATCTCGGAAGATATTATTACGATGTTATTGAAAAAGATGATCC
GTTTCCATTGGAACAAGAGAGAGAGTTGGATGTTAAGGAAACCTCCGCAG
AAAGATTAGGAATGGATGGTGACGACGAAAATCGAGAAATATCGTTAGCA
GAACTTGAGAGAAAAGACAACGAAATCCATGAGCAAGACCTTGCTGTATC
TCGAAGTCTCAACGGAAAACCGCTTAGAATCCCATCCATGTTTGGGGAAC
AAAGACGCGTGCTGAACGACGAAAAGCGAGAATTATCGTTGGCAGAACTC
GAGAGAAAAGACAACGAAATCCATGAGCAAGACCTTGCTGCATCTCGAAG
TCTCAACGGAAAACCTCTTAGAATCGCATCCATGTTTGGGGAGCGAAGAC
GCGAGCTGAACGACGAAAAACGAGAATTATCGTTGGCAGAGCTTGAGAGA
AAAGACAACGAAATCCATGAGCAAGACCTTGCTGCATCTCGAAGTCTCAA
CGGAAAACCGCTTAGAATCGCATCCATGTTTGGGGAGCGAAGACGCGAGC
TGAACGACGAAAAACGAGAATTATCGTTGGCAGAACTTGAGAGAAAAGAC
AACGAAATCTATGAGCAAGACCTTGCTGCATCTCGAAGTCTCAACGGAAA
ACCGCTTAGAATCCCATCCATGTTTGGGGAGCGAAGACGCGAGCTGAACG
ACGAAAAACGAGAATTATCGTTGGCAGAGCTTGAGAGAAAAGACAACGAA
ATCCATGAGCAAGACCTTGCTGCATCTCGAAGAGTCGAAGGAAAACGGTT
TGGAGAGCAAAGACGAGATTATCACCCAAGAGGAAGATACTTGAATGATG
ATGATGTTTTCAACGACTTGCCGTCAAGAGAAGAAAAATACATCTAATGA
GCAATTAACCAAGATAACCCAAACAATCCATTAACTTGTTTGAACTATTG
CTAACGACATTCTAAATTGTGTATTTGATACACAAGATAACCCAAACAAT
CCATTAACTTGTTTGAACTATTGCTAACGACATTCTAAATTGTGTATTTG
ATACATACTTAAACGAGCTTAAAATTTCGATATATAGGAATTTTATTgag
tttataaagaaaaataaatggaatcaaatcatgaaaatattcACGCCCCG
TATTTCCTTTAAAACTAAgcttctacaatcatggtcaagatctattgaga
atttagcttccttgtttttcgaaatttggagttcgggcgaaaaTTGCcta
ttttgggccatctcttaaatttaatcgga
Run BLAST on NCBI

transcript from alignment at scaffold_276:28436..31390-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056466 ID=TCONS_00056466|Name=TCONS_00056466|organism=Clytia hemisphaerica|type=transcript|length=2955bp|location=Sequence derived from alignment at scaffold_276:28436..31390- (Clytia hemisphaerica)
GTTCAATTGACAGATACTTAAGGTGAGCAGTTTTTAGTTAAAGTTGAAGC
ATAAAACACCTCCTTCTCATAGGATTTTTTCAGCCAGTAGGGATAAAAAT
AACTGACTGGAACTCGATGGGGACTACATAATTTTTATGGCTGGGGATTT
AAATTTCATTGTTTTTAAGTCAGAAAATTCAGTGGGGGTCGAAAAAATAG
CATAATTTTTTGCAGCGACGATTAGTGTGGTGTGATTAGATTATTTTCAG
TGGGGACAAATTTAAAAGTAAAATTTTCCACTGGGGACGATATTTTGGCC
AAAATTTCCAGTGAAAGGGGTCCCAGTAAGTCTGGGAGAAGAGGGTGTCA
AAAGCACTGTGTTTTATATGAACCCTTTGAAATCCTTTGATCGGAGCTTT
TTTAAATTGGTATACCCTAATGGTAGCACTACTCTATAGCGGTGTAAATG
CATCGATAGCTCTAGATCTAGTTTTATTAAACACTTATTCGCAATTGAAC
GTTTAAAAAAGTTTAATTGCTCCTCTTTAAAATTTAAGAATCACTTAAGA
ACATCTAAAGGCTCACTTCAATGCACCTTTTCGACCGTAGCCGCCAATTG
CCGCGCAGGCATTTTTTTTGTCCGTTTTACCACCCTAAAACCGTCCCAGT
CTTTTTTTCGCACCTAAAGACAATGGAAAAAAGTGTAAATAAAGGATTGG
GTCGAGTTTACGGTGGTAAAGTAAATTATAAAGTGGTACAACGCTCGAAA
AGGTGTATATATGTAATTTTTATGGATAAAAACTTTATTTTTAATTATTC
AAATTTATAATCATTGTAGGAGCCGACATGAAGTGGTTTATCATATTGAC
AAGTTTCATTTTGTGTGCACGTGCCATCGAAGATGACAGTTATATGGATT
ACATGAGTAGAAGATCACACTCCTGGCCGCTTCCCAATCGACGGGAGTTC
GGAAATCTCGGAAGATATTATTACGATGTTATTGAAAAAGATGATCCGTT
TCCATTGGAACAAGAGAGAGAGTTGGATGTTAAGGAAACCTCCGCAGAAA
GATTAGGAATGGATGGTGACGACGAAAATCGAGAAATATCGTTAGCAGAA
CTTGAGAGAAAAGACAACGAAATCCATGAGCAAGACCTTGCTGTATCTCG
AAGTCTCAACGGAAAACCGCTTAGAATCCCATCCATGTTTGGGGAACAAA
GACGCGTGCTGAACGACGAAAAGCGAGAATTATCGTTGGCAGAACTCGAG
AGAAAAGACAACGAAATCCATGAGCAAGACCTTGCTGCATCTCGAAGTCT
CAACGGAAAACCTCTTAGAATCGCATCCATGTTTGGGGAGCGAAGACGCG
AGCTGAACGACGAAAAACGAGAATTATCGTTGGCAGAGCTTGAGAGAAAA
GACAACGAAATCCATGAGCAAGACCTTGCTGCATCTCGAAGTCTCAACGG
AAAACCGCTTAGAATCGCATCCATGTTTGGGGAGCGAAGACGCGAGCTGA
ACGACGAAAAACGAGAATTATCGTTGGCAGAACTTGAGAGAAAAGACAAC
GAAATCTATGAGCAAGACCTTGCTGCATCTCGAAGTCTCAACGGAAAACC
GCTTAGAATCCCATCCATGTTTGGGGAGCGAAGACGCGAGCTGAACGACG
AAAAACGAGAATTATCGTTGGCAGAGCTTGAGAGAAAAGACAACGAAATC
CATGAGCAAGACCTTGCTGCATCTCGAAGTCTCAACGGAAAACCGCTTAG
AATCCCATCCATGTTTGGGGAACAAAGACGCGAGCTGAACGACGAAAAGC
GAGAATTATCGTTGGCAGAACTTGAGAGAAAAGACAACGAAATCCATGAG
CAAGACCTTGCTGCATCTCGAAGGCTTAACGGAAAACCTCTTAGAATCCC
ATCCATGTTTGGGGAGCGAAGACGCGAGCTGAACGACGAAAAGCGAGAAT
TATCGTTGGTAGAGCTTGAGAGAAAAGACAACGAAATCCATGAGCAAGAC
CTTGCTGTATCTCGAAGTCTCAACGGAAAACCTCTTAGAATCCCATCCAT
GCTTGGGGAACGAAGACGAGAGCTGAGCGACAACGAAAAGCGAGAATTAT
CGTTGGCAGAGCTTGAGAGAAAAGACAACAAAATTCATGAGCAAGACCTT
GCTGTATCTCGAAGTCTCAACGGAAAACCGCTTAGAATCCCATCCATGTT
TGGGGAGCGAAGACGCGAGCTGAACGACGAAAAACGAGAATTATCGTTGG
CAGAGCTTGAAAGAAAAGACAACGAAATCCATGAGCAAGACCTTGCTGCA
TCTCAAAAGCTAAACGGAAAACCGCTTAGAATCGAATCGATAAATGGACA
GCAAAGACTCGAGCTGAACGGCGACGAAAAGAAAGAATTATCGTTATTGG
CAGATCTGGAAAGTAATGAGAAAGAAACCGACCAACAAGATCTTGCTGCA
TATCGGAGAGTCGAAGGAAAACGGTTTGGAGAGCAAAGACGAGATTATCA
CCCAAGAGGAAGATACTTGAATGATGATGATGTTTTCAACGACTTGCCGT
CAAGAGAAGAAAAATACATCTAATGAGCAATTAACCAAGATAACCCAAAC
AATCCATTAACTTGTTTGAACTATTGCTAACGACATTCTAAATTGTGTAT
TTGATACACAAGATAACCCAAACAATCCATTAACTTGTTTGAACTATTGC
TAACGACATTCTAAATTGTGTATTTGATACATACTTAAACGAGCTTAAAA
TTTCGATATATAGGAATTTTATTGAGTTTATAAAGAAAAATAAATGGAAT
CAAATCATGAAAATATTCACGCCCCGTATTTCCTTTAAAACTAAGCTTCT
ACAATCATGGTCAAGATCTATTGAGAATTTAGCTTCCTTGTTTTTCGAAA
TTTGGAGTTCGGGCGAAAATTGCCTATTTTGGGCCATCTCTTAAATTTAA
TCGGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035580XLOC_035580Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056466-exon-scaffold_276-1575043694:31369..31390TCONS_00056466-exon-scaffold_276-1575043694:31369..31390Clytia hemisphaericaexon
TCONS_00056466-exon-scaffold_276-1575043694:29679..30571TCONS_00056466-exon-scaffold_276-1575043694:29679..30571Clytia hemisphaericaexon
TCONS_00056466-exon-scaffold_276-1575043694:29518..29534TCONS_00056466-exon-scaffold_276-1575043694:29518..29534Clytia hemisphaericaexon
TCONS_00056466-exon-scaffold_276-1575043694:28436..28932TCONS_00056466-exon-scaffold_276-1575043694:28436..28932Clytia hemisphaericaexon
TCONS_00056466-exon-scaffold_276-1510915933:31369..31390TCONS_00056466-exon-scaffold_276-1510915933:31369..31390Clytia hemisphaericaexon
TCONS_00056466-exon-scaffold_276-1510915933:29679..30571TCONS_00056466-exon-scaffold_276-1510915933:29679..30571Clytia hemisphaericaexon
TCONS_00056466-exon-scaffold_276-1510915933:29518..29534TCONS_00056466-exon-scaffold_276-1510915933:29518..29534Clytia hemisphaericaexon
TCONS_00056466-exon-scaffold_276-1510915933:28436..28932TCONS_00056466-exon-scaffold_276-1510915933:28436..28932Clytia hemisphaericaexon
TCONS_00056466-exon-scaffold_276-1491911889:31369..31390TCONS_00056466-exon-scaffold_276-1491911889:31369..31390Clytia hemisphaericaexon
TCONS_00056466-exon-scaffold_276-1491911889:29679..30571TCONS_00056466-exon-scaffold_276-1491911889:29679..30571Clytia hemisphaericaexon
TCONS_00056466-exon-scaffold_276-1491911889:29518..29534TCONS_00056466-exon-scaffold_276-1491911889:29518..29534Clytia hemisphaericaexon
TCONS_00056466-exon-scaffold_276-1491911889:28436..28932TCONS_00056466-exon-scaffold_276-1491911889:28436..28932Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_276supercontigscaffold_276:28436..31390 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0495366	0.226867	0	0	0	0	0.0373871	0	0.0490105	0	0	0	0.0553791	0	0.136805	0	17.2811	20.6645	0.0820733	0.0773122	8.09651	9.05594	6.34663	7.86099	14.0035	16.8131	1.66612	0.0917269	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056466 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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