TCONS_00056476 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056476
Unique NameTCONS_00056476
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length116

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056476 ID=TCONS_00056476|Name=TCONS_00056476|organism=Clytia hemisphaerica|type=transcript|length=116bp
TCTGAAGTTTCCTCTTCGACTTTAGAGACAAGTTCTTCGACTGTTTGTGA
AACTTCTTCAGTTGGCTTGCTTTCTTCTGAAGTTTCCTCTTCGACTTTGG
ACACAAGTTCTTCGAC
Run BLAST on NCBI

transcript from alignment at scaffold_276:154640..155718-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056476 ID=TCONS_00056476|Name=TCONS_00056476|organism=Clytia hemisphaerica|type=transcript|length=1079bp|location=Sequence derived from alignment at scaffold_276:154640..155718- (Clytia hemisphaerica)
TCTGAAGTTTCCTCTTCGACTTTAGAGACAAGTTCTTCGACTGTTTGTGA AACATCTTCTGTTGGCTTGCTTTCTTCTGAAGTTTCCTCTTCGATTTTAG AGACAGGTTCTTCGACTGTTTGTGAAACTTCTTCTGTCGGCTTACTTTCT TCTGAAGTTTCCTCTTCGACTTTAGCGACAAGTTCTTCGACTGTTTGTGA AACATCTTCTGTTGGCTTGCTTTCTTCAGAAGTTTCCTCTTCGACTTTAG CGACAAGTTCTTCGACTGTTTGTGAAACATCTTCTGTTGGCTTGCTTTCT TCTGAAGTTTCCTCTTCGACTTTAGAGACAAGTTCTTCGACTGTTTGTGA AACTTCTTCCGTTGGCTTACTTTCTTCAGAAGTTTCCTCTTCGACTTTAA AGACAAGTTCTTCGACTGTTTGGGAAACTTCTTTTGTTGGTTTGCTTTCT TCAAAAGTTTCCTCTTCGACTTTAGAGACAAGTTCTTCGACTGTTTGAGA AACTTCTTCTGTTGGTTTGATTTCTTCTGAAGTTTCCTCTTCGATTTTGG ACACAAGTTCTTCCACTGTTTCTGAAACTTCTTCAGTTGGCTTGCTTTCT TCTGAAGTTTCCTCTTCGACTTTGGACATAAGTTCTTCGACTGTTTGTGA AATTTCTTCTGTTGGCTTGCTTTCTTCTGAAGTTTCCTGTTCAACATTAG AGACAAGTTCTTCGACTGTTTGTGAAACTTCTTCCGTTGACTTGCTTTCT TCTGAAGTTTCCTCTTCAACATTAGACACAAGTTCATCGACTGTTTGTGA AACTTCTTCATCTGTTTGAAAAACTTTTTCTCTTGGTTTGCTTTCTTCAG AAGTTTCTAAGTCGACTTTGGACACGAGTTCTTCGACTGTTTCTGAAACT TTTTCAACTGTTTGTGAAATTTCTTCTGTTGGCTTGCTTTCTTCTAAAGT TTCCTCTTCAACTTTAAAGAGAAGTTCTTCAACTGTTTGTGAAACCACTT CATCTGCTTGAGGAACATCCTCATTTGGTTTGCTTTCTTCAGAAGTTTCT TCTTCGACTTTGGACACAAGTTCTTCGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035582XLOC_035582Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056476-exon-scaffold_276-1575043694:155666..155718TCONS_00056476-exon-scaffold_276-1575043694:155666..155718Clytia hemisphaericaexon
TCONS_00056476-exon-scaffold_276-1575043694:155092..155140TCONS_00056476-exon-scaffold_276-1575043694:155092..155140Clytia hemisphaericaexon
TCONS_00056476-exon-scaffold_276-1575043694:154640..154653TCONS_00056476-exon-scaffold_276-1575043694:154640..154653Clytia hemisphaericaexon
TCONS_00056476-exon-scaffold_276-1510915933:155666..155718TCONS_00056476-exon-scaffold_276-1510915933:155666..155718Clytia hemisphaericaexon
TCONS_00056476-exon-scaffold_276-1510915933:155092..155140TCONS_00056476-exon-scaffold_276-1510915933:155092..155140Clytia hemisphaericaexon
TCONS_00056476-exon-scaffold_276-1510915933:154640..154653TCONS_00056476-exon-scaffold_276-1510915933:154640..154653Clytia hemisphaericaexon
TCONS_00056476-exon-scaffold_276-1491911889:155666..155718TCONS_00056476-exon-scaffold_276-1491911889:155666..155718Clytia hemisphaericaexon
TCONS_00056476-exon-scaffold_276-1491911889:155092..155140TCONS_00056476-exon-scaffold_276-1491911889:155092..155140Clytia hemisphaericaexon
TCONS_00056476-exon-scaffold_276-1491911889:154640..154653TCONS_00056476-exon-scaffold_276-1491911889:154640..154653Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_276supercontigscaffold_276:154640..155718 -
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056476 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
TCTGAAGTTTCCTCTTCGACTTTAGAGACAAGTTCTTCGACTGTTTGTGAAACTTCTTCAGTTGGCTTGCTTTCTTCTGAAGTTTCCTCTTCGACTTTGGACACAAGTTCTTCGAC102030405060708090100110Sequence
Match NameE-valueIdentityDescription
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