TCONS_00056485 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056485
Unique NameTCONS_00056485
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length984

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056485 ID=TCONS_00056485|Name=TCONS_00056485|organism=Clytia hemisphaerica|type=transcript|length=984bp
CAACATACACATAGACAACCAATCAAAATGGCTTCTGCAGGAGCACTCCT
CTTAAAACAAAAAGTCCCATTCGTCATGGAGCTAGACGGTCAAATTAACG
AAATCAAATTCTCAGTCCGGGGCAAGGGGACAGGGGACGCAACAACTGGC
ACCATTGACGCCAAATTTGTATGTACCACTGGTGAATTGCCAGTACCGTG
GGCTTCAATTTCGAGTGCGATGTCATATGGAGCTCTCTGTTTCACCAAAT
ATCCAGACAATATTAAAGATTTCTTCAAATCAACCCTTCCTGACGGTTAT
ATTCAAGAAAGGACTATTAGCTATGAAAATGATGGTTCATGGAAAGTTCG
TGGTGTAATCACTTACGAACATGGTTCCATTTACAATCGCGTCACACTTA
AAGGAGAAGGATTCAAAAGAGACGGACACATCCTTCAAAAAAGATACGAC
TTTTGCTGTCCGAATAATGCAGTTTACGTTTTGCCGGATAAAGAAAACAA
CGGACTCCGAGTTGTTTTCAATAAGGCTTTCAAATTGAAAGATGGAGGAT
ACCATTGTGCTAAACACGAACAACAGAATATTCCACTGGGCGGAGGAGTT
GTTGATATTCCAATTTATCATCATCTTCATGTTGGAAACATTTTCTCGAG
AGATCCAGAAGAAACACGTGACCACTTGTGTTTAATCGAAAAGCTCACAG
CTATAGATCTTGAGACATACAATAACTGAACATAttattcttcatttaat
ttataTTTACCCTACCGATATCATTGACATTAGCTTTAAATTGAAGTTAG
AGTACGTTTTATTTAAGCGGGTGTAAAACCTTTCCCCacaccttttcaaa
aattacgtcatgTGCAACATACCTCtacttcaaaatatttctacttctgg
taattgattcccagaggagttcataagaagttGACTCTATCTAAAAAGTC
TCAAGGAATATACTCTCGGGTAACTAATAGCGGG
Run BLAST on NCBI

protein sequence of TCONS_00056485-protein

>TCONS_00056485-protein ID=TCONS_00056485-protein|Name=TCONS_00056485-protein|organism=Clytia hemisphaerica|type=polypeptide|length=242bp
QHTHRQPIKMASAGALLLKQKVPFVMELDGQINEIKFSVRGKGTGDATTG
TIDAKFVCTTGELPVPWASISSAMSYGALCFTKYPDNIKDFFKSTLPDGY
IQERTISYENDGSWKVRGVITYEHGSIYNRVTLKGEGFKRDGHILQKRYD
FCCPNNAVYVLPDKENNGLRVVFNKAFKLKDGGYHCAKHEQQNIPLGGGV
VDIPIYHHLHVGNIFSRDPEETRDHLCLIEKLTAIDLETYNN
Run BLAST on NCBI

transcript from alignment at scaffold_276:211069..218741-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056485 ID=TCONS_00056485|Name=TCONS_00056485|organism=Clytia hemisphaerica|type=transcript|length=7673bp|location=Sequence derived from alignment at scaffold_276:211069..218741- (Clytia hemisphaerica)
CAACATACACATAGACAACCAATCAAAATGGCTTCTGCAGGAGCACTCCT CTTAAAACAAAAAGTCCCATTCGTCATGGAGCTAGACGGTCAAATTAACG AAATCAAATTCTCAGTCCGGGGCAAGGGGACAGGGGACGCAACAACTGGC ACCATTGACGCCAAATTTGTATGTACCACTGGTGAATTGCCAGTACCGTG GGCTTCAATTTCGAGTGCGATGTCATATGGAGCTCTGTAAGTATCACAGT ACTCTTAGAGGGGAAGAAAGGTCCTATTCCAAAGAGTATACAATTTCCCC CAGAAAGACTCTTCTACACTTTACAGATCATCTAACTAATGACGCAATGT TTCGAGCTCCAACCCTTACCCTAACTGATAAGATCAAAATAATCAAAAAT CGAAAATATCGAAAAGGTCAAAAAGGAAGAATAAAAAAATTCCACTCCAG AAGCAATTACCCCGAGATTACTTACTTCCCAGAAAATAGATACTACCTGG TACCCAGAATGGTTGTAACCCCTCTGGGAAATTATTACTCCCTGCTGAAA AAAATCTTACTTCTATANTTAAGGAATTTTTACATGGCAGTTCTGAAATG TCATTTATAGACAGTGATTGATTTTTCAATCAAGATTTGCACTTGGATAT TATTACAACCACGTAGTTTTTGGAAAAAGAATGAATCAACATTAAGAAAA ATTTCAAAACAATGACGTCAACAATCTAGTCCCAGTCCTAAGTAAAACGG TATAAATGAATTGAAAATCTTGAAGTTTAAACATCCGAGCAACAACATAC ACATAGACAACCAATCAAAATGGCTTCTGCAGGAGCACTCCTCTTAAAAC AAAAAGTCCCATTCGTCATGGAGCTAGACGGTCAAATTAACGAAATCAAA TTCTCAGTCCGGGGCAAGGGGACAGGGGACGCAACAACTGGCACCATTGA CGCCAAATTTGTATGTACCACTGGTGAATTGCCAGTACCGTGGGCTTCAA TTTCGAGTGCGATGTCATATGGAGCTCTGTAAGTATCACAGTACTCTTAG AGGGGAAGAAAGGTCCTATTCCAAAGAGTATACAATTTCCCCCAGAAAGA CTCTTCTACACTTTACAGATCATCTAACTAATGACGCAATGTTTCGAGCT CCAACCCTTACCCTAACTGATAAGATCAAAATAATCAAAAATCGAAAATA TCGAAAAGGTCAAAAAGGAAGAATAAAAAAATTCCACTCCAGAAGCAATT ACCCCGAGATTACTTACTTCCCAGAAAATAGATACTACCTGGTACCCAGA ATGGTTGTAACCCCTCTGGGAAATTATTACTCCCTGCTGAAAAAAATCTT ACTTCTATAATAAAAGTGGACATCCTTAAAAAAAAGACAGTCCTTGTAAC TTTCGTTTGCTAACTGAAAATTTTGAAAGTTTTTTATGCTTTTCAGAAAA AACAGGCTTTCTACTTTTTATACTATCTTGTCACTGAGATACCCAGCTGA CACACAACGTTGTTTTAACGTTAATACAAGAAAGCCTAAGTGGCGTAAAG ACCCAGCAGTGTTAGCGCTGTCAGCATATTTTTCCGCTGCAGAATCACCA CACAACAGGGGCAAACTTATTCAATTTATTGACTCGAGTCGGGCAAGAAA TAAAGATTTAATTACTTTACTTACCATAGTCGTGAAATTGATTTTAGTGT TTGAACATAAAAGTTATGTTTTAGGTTCTTTAACACTTTCAACAAAGAAT TGACTTTATAAATTGCTTTTTAATGAAATCCCTTAAAGGGAATAGCGCTA TACTTATAGTAGGGGTCGGAGTTGCTGGTAATTCCATGGTATACTCTGAA ATACATGCTGATGTCAGCCCGAAAGCTGATTGGCTTANNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN TTTGGTTTTTGTTATGATCCAGCACTCCTAAATACTCCTCCGTATGGGTG TTTGTGCCAATGCTAGATCAGCATTTCATAAATATACCATGCGTCGTTCC CTTTAAGAGTAATTAAGAATTTCATTGCAAAAATGACGTTATGAACTTTT AAAAGACGTTAATAATATGTTGCATCACCTTCTTTTATAAAAAGTGCTAA GCTTTAATGGGTAATTAACCTTTTTGTTTTTTTCAAAATGTCCGCAAAGA ATTGAACTGTTTTACATTTTTCGGAAAATTTTTCTAAATTAATGCATCAA AAGTTATGGCTGTTTTTCTATGAAAAATTGGGATGGAAAATTGGTCAAAA AGCACTATTTTCAAGATTTTGAAGGAAACAAGCTTTTAGAAAAATTTTCC GAAAAAATAATTTTAGTTCAATAAAAGATACACCATATACCGCAAAAAAA ATTTCAAAATGTTTTTTCTTCGCCGAAACTAAGCTCTTCAAAGTTGAAAT ACTCTTCACTACAAAAGTCTTTATTTGCTTCTTCATCAAATTTTTTCATT GTGATTCTTAAATTTTCAGACTCAAGGATAATTGGCCTAACAGAAAATGT ATAACAAGCCACAGTTTTGTGGGCTACATCAAGTAGAACTTTATATTTTG TAAGTGGCAAATTTATGGTCAGAGCCCTTAAAGGCCCAATGCGCTGCTCT GTTCGGCCAATAACGTTGTGAACATTAGATAAACGGGGGATAAACGTTAA AACAACGTCTAGGCAATGCGACTAACGGTCTTCATGAAACACGCGTTTAT TCTTTCAGCTGTTTCACCAAATATCCAGACAATATTAAAGATTTCTTCAA ATCAACCCTTCCTGACGGTTATATTCAAGAAAGGACTATTAGCTATGAAA ATGATGGTTCATGGAAAGTTCGTGGTGTAATCACTTACGAACATGGTTCC ATTTACAATCGCGTCACACTTAAAGGAGAAGGATTCAAAAGAGACGGACA CATCCTTCAAAAAAGATACGACTTTTGCTGTCCGAATAATGCAGTTTACG TTTTGCCGGATAAAGAAAACAACGGACTCCGAGTTGTTTTCAATAAGGTT AGCTTTTTCACCTTTGTCAATTACTCTCCCGGGGGGGGGGGNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNGGGGGGGGGGGGGGGGGTACTTAGGTATGTGAGATGACGGATA TGTTCGAGCATGGATTTATCATAGAACTCTGGATATACACAACGAGCTGG TTTTTCATCGATTTCTCATGTTCTAGCCTTGTCCGCAGTAATGACAATAT TGTTCACCCTCCTCCATTCACTAATAATTTTTCGTAGATTTATTTATTGC ATTTTTCATCAAAACACAGCTATACAATTCCCAAATGAGACTTAAAGATC TCTCAAGAGAGTCAAATGAATCAAATTGATTGCTAATGATATGTCGTTAT GACGTTTCAAGCTGTGAGAAAGATGCGACAAACATGCTATGTATAAGAAA TTGAATGTTAACACNTATCTTCCTTTTCGCTATCAAAAACAATGAAAATA TTTGTAAAATACCATTATCTACAATCATACCGCCGAAATATATTGGTAAT TTTTGGTATTTTAAACACCCCTGTCTCTGTGCCCCAGTGGGTGTTGAGTA CCCAGTGGGGTGAGAATGAAAAAACCTGAAATTCACTGGGGTGAAAAATC TTCGCTCAAATATTGAGTGGGTGGCGAAAATTTCACTGACATTCACTGGG GTGAGAAAGAATTTTTAGCATGAGCTAAATTTTGGTTAGCCTGTTAGACG AAAACCGCTTAATTACTAAGCGGTTTTCGTCTAACAGTTCTATCGTGTTT TAACGATGGAAGGTACTGGCTAACTTTTGGTCTAGTCAAAATCTGCTTCT TACATGCTACTAAAGTAGAAATATCATCTNTCAAGATACTCCAGTCTAAC ATATGTCAATCCTAGCTCTTCCAAGGAAAAAATTGGAAAGATATTGCCAA CCTTATTTTCAGCGTCATTCTAGAATTTTAATCAATTTTTCTTGTTTGAT GAAGTTTTTTCCACATTTAATTTCATAAATGTATTCGTTAACCTTTCTTG TTTTCATTTTCAAAGTTGCATCCGGTAAATATACTAAAACAAGAAGTTAC AGGACTTTTTAGAAATGGGATTATTAATCATTTTTCAAAATCAGGGACCT CGAGCCGCTAGGACAGTTGTCCTTTGCGGACAAAGCTAGAACATCGATTG TTTTCTAAAACAATGGAAAGACAATAGTTCGCTCTCCACCGTTTTATTTG ATGTTTATCCAGAGTTCTATGATAAATCCATGGTTCGAGTCAAAGTTCGA AAATCAACCCTTTCGAAAATTTCGTCCATTTTTCGACGTTTTTGCCAGCC CTTGAGAGAGCAAAGCAAAATTTCAGCCAACATTTTTCAGCCAACATTTT TTATAACTTTAATCCAAATTTCCAGAATTCATGATCCTTTGAGTCAAACA ATTTTTGATTTTCGTAATTTTAGAACCATTTTACAGGGGCTCTATTGATT TTTTATGGGTTTTTTTTACCCCTTTTAGGAACTTTAGAGGGAGTGAAAAA AGGATCCTTATGGGTTGCACCAACCCAGCACCTATTTTGCCTAGTACCCA CCCCTTCCCTTCCAGTTTCAACTGAATAATCATTAACAACCTTCAAGTAC AATATCTTCCTTTTCGCTATCAAAAACAATGAAAATATTTGTAAAATACC ATTATCTACAATCATACCGCCGAAATATATTGGTAATTTTTGGTATTTTA AACACCCCTGTCTCTGTGCCCCAGTGGGTGTTGAGTACCCAGTGGGGTGA GAATGAAAAAACCTGAAATTCACTGGGGTGAAAAATCTTCGCTCAAATAT TGAGTGGGTGGCGAAAATTTCACTGACATTCACTGGGGTGAGAAAGAATT TTTAGCATGAGCTAAATTTTGGTTAGCCTGTTAGACGAAAACCGCTTAAT TACTAAGCGGTTTTCGTCTAACAGTTCTATCGTGTTTTAACGATGGAAGG TACTGGCTAACTTTTGGTCTAGTCAAAATCTGCTTCTTACATGCTACTAA AGTAGAAATATCATCTTGATCAGGTGGATATACTCTCACAGCACTGTAAC AGGAAATGTAATGAGGTCTGGGAGAAGGGGGCTATAGGGGAGCAGTATGG TTATATCAAATTTTATAAACTCTGGGACCTAGTAATGTTTAGTCAACATG GTTAAAGTATTTCAGTATCTACGCAAGTGAGAAAGCCTCTCTTTTGAGGC TAGAACCTAGCTTTAAAGAAAGAAAGGGCCAAGTACAACCGTGGTTTGCG CTGACAGAGAAAGTTTTGATTTTCAGCCCCTCTCGTTTGGCACTTTCCAC GTTTTAAAATGACCATAGAAGTCGGGTTGAATACAGCAAATATATTTAAG TGGAACATTTGATGGCGAGCGAGCGAAGCGATCAAATTTTTTTTGGCTTT TTCGGATATTTCACTTTAAGAAAAGGGGAAGTAGAAAATTCTAGCGGGGC GATTTTTTGAAAGAAAAGTTCTACTGGGGTACGTTAAAATAAGGGCTTTT CGAGTGGGGTATGTGTAAACTTTTTATCATTTTCAATGGGGTGCTTTTTT ACTACAACATTCCAGTGGGGTGAGTGATTTGTCCAGTGGGGCTGAAAAAT GAGCCATTTTTGGAAAAATAATTCACTGGGGTGACCAGTGGAGTGGATCC CATTGGGTCACAGAGGCAGGGGTGTTTTTAACGTTTTTCAGAGAATTGCA GTTTCAGTACTTCCACTTTGCTTCATTGAATTTTTCGATTTGGGAAGGGT TAAGTGACTCCCAGGCTATATTCTCAACCTTATTGGAACATTTTTGAGCT TTTATATCCTGAGTCATAAGTCTGATGNGGGGTTAAGTGACTTCCAGGCT ATATTCTCAGCCTTATTGGAACATTTTTGAGCTTTTAGATCCTGAGTCTT AAGTCTGATGTTAAAGCTCACAGTTAAAATTCTACTTGCTTACTGTACTT CAAAGCACTTAAAAATCCCTTGCAGTTTTAAAGTTTTGAGGGTATTTCCC TTTTGTGTCAATTTTTTCGGCGCCGCGATTGTAGTTATGCAACTGGACAC ACTTTACACCATTTCCAGCTGCGAAGGCACCTAATTAAAAAGGGTTGAGT TAGACTTTAAATTTACAATATTATTGCAAAATGGAGTTTCTAATTTTGTT ATACATTTGCACAGGCTTTCAAATTGAAAGATGGAGGATACCATTGTGCT AAACACGAACAACAGAATATTCCACTGGGCGGAGGAGTTGTTGATATTCC AATTTATCATCATCTTCATGTTGGAAACATTTTCTCGAGAGATCCAGAAG AAACACGTGACCACTTGTGTTTAATCGAAAAGCTCACAGCTATAGATCTT GAGACATACAATAACTGAACATATTATTCTTCATTTAATTTATATTTACC CTACCGATATCATTGACATTAGCTTTAAATTGAAGTTAGAGTACGTTTTA TTTAAGCGGGTGTAAAACCTTTCCCCACACCTTTTCAAAAATTACGTCAT GTGCAACATACCTCTACTTCAAAATATTTCTACTTCTGGTAATTGATTCC CAGAGGAGTTCATAAGAAGTTGACTCTATCTAAAAAGTCTCAAGGAATAT ACTCTCGGGTAACTAATAGCGGG

Coding sequence (CDS) from alignment at scaffold_276:211069..218741-

>TCONS_00056485 ID=TCONS_00056485|Name=TCONS_00056485|organism=Clytia hemisphaerica|type=CDS|length=2187bp|location=Sequence derived from alignment at scaffold_276:211069..218741- (Clytia hemisphaerica)
GCTTTCAAATTGAAAGATGGAGGATACCATTGTGCTAAACACGAACAACA
GAATATTCCACTGGGCGGAGGAGTTGTTGATATTCCAATTTATCATCATC
TTCATGTTGGAAACATTTTCTCGAGAGATCCAGAAGAAACACGTGACCAC
TTGTGTTTAATCGAAAAGCTCACAGCTATAGATCTTGAGACATACAATAA
CTGACTGTTTCACCAAATATCCAGACAATATTAAAGATTTCTTCAAATCA
ACCCTTCCTGACGGTTATATTCAAGAAAGGACTATTAGCTATGAAAATGA
TGGTTCATGGAAAGTTCGTGGTGTAATCACTTACGAACATGGTTCCATTT
ACAATCGCGTCACACTTAAAGGAGAAGGATTCAAAAGAGACGGACACATC
CTTCAAAAAAGATACGACTTTTGCTGTCCGAATAATGCAGTTTACGTTTT
GCCGGATAAAGAAAACAACGGACTCCGAGTTGTTTTCAATAAGCAACATA
CACATAGACAACCAATCAAAATGGCTTCTGCAGGAGCACTCCTCTTAAAA
CAAAAAGTCCCATTCGTCATGGAGCTAGACGGTCAAATTAACGAAATCAA
ATTCTCAGTCCGGGGCAAGGGGACAGGGGACGCAACAACTGGCACCATTG
ACGCCAAATTTGTATGTACCACTGGTGAATTGCCAGTACCGTGGGCTTCA
ATTTCGAGTGCGATGTCATATGGAGCTCTGCTTTCAAATTGAAAGATGGA
GGATACCATTGTGCTAAACACGAACAACAGAATATTCCACTGGGCGGAGG
AGTTGTTGATATTCCAATTTATCATCATCTTCATGTTGGAAACATTTTCT
CGAGAGATCCAGAAGAAACACGTGACCACTTGTGTTTAATCGAAAAGCTC
ACAGCTATAGATCTTGAGACATACAATAACTGACTGTTTCACCAAATATC
CAGACAATATTAAAGATTTCTTCAAATCAACCCTTCCTGACGGTTATATT
CAAGAAAGGACTATTAGCTATGAAAATGATGGTTCATGGAAAGTTCGTGG
TGTAATCACTTACGAACATGGTTCCATTTACAATCGCGTCACACTTAAAG
GAGAAGGATTCAAAAGAGACGGACACATCCTTCAAAAAAGATACGACTTT
TGCTGTCCGAATAATGCAGTTTACGTTTTGCCGGATAAAGAAAACAACGG
ACTCCGAGTTGTTTTCAATAAGCAACATACACATAGACAACCAATCAAAA
TGGCTTCTGCAGGAGCACTCCTCTTAAAACAAAAAGTCCCATTCGTCATG
GAGCTAGACGGTCAAATTAACGAAATCAAATTCTCAGTCCGGGGCAAGGG
GACAGGGGACGCAACAACTGGCACCATTGACGCCAAATTTGTATGTACCA
CTGGTGAATTGCCAGTACCGTGGGCTTCAATTTCGAGTGCGATGTCATAT
GGAGCTCTGCTTTCAAATTGAAAGATGGAGGATACCATTGTGCTAAACAC
GAACAACAGAATATTCCACTGGGCGGAGGAGTTGTTGATATTCCAATTTA
TCATCATCTTCATGTTGGAAACATTTTCTCGAGAGATCCAGAAGAAACAC
GTGACCACTTGTGTTTAATCGAAAAGCTCACAGCTATAGATCTTGAGACA
TACAATAACTGACTGTTTCACCAAATATCCAGACAATATTAAAGATTTCT
TCAAATCAACCCTTCCTGACGGTTATATTCAAGAAAGGACTATTAGCTAT
GAAAATGATGGTTCATGGAAAGTTCGTGGTGTAATCACTTACGAACATGG
TTCCATTTACAATCGCGTCACACTTAAAGGAGAAGGATTCAAAAGAGACG
GACACATCCTTCAAAAAAGATACGACTTTTGCTGTCCGAATAATGCAGTT
TACGTTTTGCCGGATAAAGAAAACAACGGACTCCGAGTTGTTTTCAATAA
GCAACATACACATAGACAACCAATCAAAATGGCTTCTGCAGGAGCACTCC
TCTTAAAACAAAAAGTCCCATTCGTCATGGAGCTAGACGGTCAAATTAAC
GAAATCAAATTCTCAGTCCGGGGCAAGGGGACAGGGGACGCAACAACTGG
CACCATTGACGCCAAATTTGTATGTACCACTGGTGAATTGCCAGTACCGT
GGGCTTCAATTTCGAGTGCGATGTCATATGGAGCTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035583XLOC_035583Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056485-proteinTCONS_00056485-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056485-exon-scaffold_276-1575043694:218506..218741TCONS_00056485-exon-scaffold_276-1575043694:218506..218741Clytia hemisphaericaexon
TCONS_00056485-exon-scaffold_276-1575043694:215295..215583TCONS_00056485-exon-scaffold_276-1575043694:215295..215583Clytia hemisphaericaexon
TCONS_00056485-exon-scaffold_276-1575043694:211069..211527TCONS_00056485-exon-scaffold_276-1575043694:211069..211527Clytia hemisphaericaexon
TCONS_00056485-exon-scaffold_276-1510915933:218506..218741TCONS_00056485-exon-scaffold_276-1510915933:218506..218741Clytia hemisphaericaexon
TCONS_00056485-exon-scaffold_276-1510915933:215295..215583TCONS_00056485-exon-scaffold_276-1510915933:215295..215583Clytia hemisphaericaexon
TCONS_00056485-exon-scaffold_276-1510915933:211069..211527TCONS_00056485-exon-scaffold_276-1510915933:211069..211527Clytia hemisphaericaexon
TCONS_00056485-exon-scaffold_276-1491911889:218506..218741TCONS_00056485-exon-scaffold_276-1491911889:218506..218741Clytia hemisphaericaexon
TCONS_00056485-exon-scaffold_276-1491911889:215295..215583TCONS_00056485-exon-scaffold_276-1491911889:215295..215583Clytia hemisphaericaexon
TCONS_00056485-exon-scaffold_276-1491911889:211069..211527TCONS_00056485-exon-scaffold_276-1491911889:211069..211527Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_276supercontigscaffold_276:211069..218741 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

min expression (0 tpm) - - (236.21 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.137333 0 0.519287 0.126995 0.0753765 0.0595838 0.283205 0.0854979 0.0773095 0.119693 0.164222 0.0305472 0 0 0 0 0.288725 0.271547 0 0 0.0442635 0 6.63774 13.0338 9.31457 16.2947 236.21 120.296 1.66445 3.89779
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000786Green_fluorescent_prot
IPR011584GFP-related
IPR009017GFP
Vocabulary: Biological Process
TermDefinition
GO:0006091generation of precursor metabolites and energy
GO:0008218bioluminescence
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008218 bioluminescence
biological_process GO:0006091 generation of precursor metabolites and energy
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056485 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
100200300400500600700800900Sequence
Match NameE-valueIdentityDescription
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