Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056488 ID=TCONS_00056488|Name=TCONS_00056488|organism=Clytia hemisphaerica|type=transcript|length=1267bp atttggttttggttttggcAATCTTGCGGTGAAAATGCTAATCGTAAATA CAAGAGGAAATAACCAATCCATCAGTACACAGATGGCTATTATACCTACT AAGAAAGTACTGATTGACGGCTGGGATCTCCCCGTCTACGGGATCGAGCA AGGACAATTTGCTGCTATCCACATCCCAGCTTTAACGTGTATATTTCTAA GTTTGATTGCCGCTATTTGCGTATTGGTATTTTCATTTAAGACGAAAAGT TTTCGAACGTTTTTCATGTGGAATAAAAGCGAACGTTTTGTTGTTTATCT GGCAATCTGTGATGGTCTGTTTAATATATGCCATTCCTTGGATCATTTAC ATATCTTCATAACACATGATCACCCGTATCCCAAAAGCCTTTGCGAGTTT TATGGATTTATGCTAGCTGAATTTATAACAGCCCAAAACCTTATGGTTAA CGTTGTCTCCATTAATGCATTTGTTTTGATCTATTTTCGAACCAATATGG ATTTTGGTAAATGTGATTACAAATTGTTATTGTGGACCTTTGGACTTCCG TTTGTGGCGGCGATTGTAGCACTTTCCCTTGGCACCATGGGGCCGAATGG GACCTTctgCTATTTCGATGGTGTGAATGGAGAACTCGCAAACCTCTTTT TTACGACTGTCCCCTTGACTGTTATTTTGCTGACCAATATCATCTTATAT CTTCTAACTTGGCGTCGCATAAAACAAGAAGAACCTAAATTTAAAGGCAT CAATGGCCGCGAGGCTAGAATCGTACGCGCGTCACATCGAGCGGCCCGCA CAATGACTTTATTTGTAACAGCCTTTATAATACAATGGTGGGCAATGTGT ATTTACGGGATAGTACAGATGTTAGTTGAAGTGCCGATAGAACTATTCCA ATTCGTGACAACATTTTCGAACGTCGGTGGCATACTAAACGGAATTGTTT ATTACATCATTAGACGGCGTTCCAGAGAAAAACATTCAGAGGCTAGTTTA GAGCTATCGAAATCGGACGGTAGCAAAAAGTTTACGCGCATGACAAATTC GAATTCACCGACATTGGATGGTATCAGTAGTGGTCAGGAAGAAGTTGAGG AATCATCCACTAAGCTTTGATTTGTTATGTCGGTACTATTGAGTTAAAAT CCTGATGAACTTTGCAAGCAATAAGATGTGAAGGTCCAAAGATTTGTGAG CATTcagaatgacggattgaatctagtgcTTTTTACGAAACCTTTTTTAC ATTCAATCCGacgtttg Run BLAST on NCBI protein sequence of TCONS_00056488-protein >TCONS_00056488-protein ID=TCONS_00056488-protein|Name=TCONS_00056488-protein|organism=Clytia hemisphaerica|type=polypeptide|length=372bp
FGFGFGNLAVKMLIVNTRGNNQSISTQMAIIPTKKVLIDGWDLPVYGIEQ GQFAAIHIPALTCIFLSLIAAICVLVFSFKTKSFRTFFMWNKSERFVVYL AICDGLFNICHSLDHLHIFITHDHPYPKSLCEFYGFMLAEFITAQNLMVN VVSINAFVLIYFRTNMDFGKCDYKLLLWTFGLPFVAAIVALSLGTMGPNG TFCYFDGVNGELANLFFTTVPLTVILLTNIILYLLTWRRIKQEEPKFKGI NGREARIVRASHRAARTMTLFVTAFIIQWWAMCIYGIVQMLVEVPIELFQ FVTTFSNVGGILNGIVYYIIRRRSREKHSEASLELSKSDGSKKFTRMTNS NSPTLDGISSGQEEVEESSTKL Run BLAST on NCBI transcript from alignment at scaffold_276:243225..246252- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056488 ID=TCONS_00056488|Name=TCONS_00056488|organism=Clytia hemisphaerica|type=transcript|length=3028bp|location=Sequence derived from alignment at scaffold_276:243225..246252- (Clytia hemisphaerica) ATTTGGTTTTGGTTTTGGCAATCTTGCGGTGAAAATGCTAATCGTAAATA
CAAGAGGAAATAACCAATCCATCAGTACACAGATGGCTATTATACCTACT
AAGAAAGTACTGATTGACGGCTGGGATCTCCCCGTCTACGGGATCGAGCA
AGGACAATTTGCTGCTATCCACATCCCAGCTTTAACGTGTATATTTCTAA
GTTTGATTGCCGCTATTTGCGTATTGGTATTTTCATTTAAGACGAAAAGT
TTTCGAACGTTTTTCATGTGGAATAAAAGCGAACGTTTTGTTGTTTATCT
GGCAATCTGTGATGGTCTGTTTAATATATGCCATTCCTTGGATCATTTAC
ATATCTTCATAACACATGATCACCCGTATCCCAAAAGCCTTTGCGAGTTT
TATGGATTTATGCTAGCTGAATTTATAACAGCCCAAAACCTTATGGTTAA
CGTTGTCTCCATTAATGCATTTGTTTTGATCTATTTTCGAACCAATATGG
ATTTTGGTAAATGTGATTACAAATTGTTATTGTGGACCTTTGGACTTCCG
TTTGTGGCGGCGATTGTAGCACTTTCCCTTGGCACCATGGGGCCGAATGG
GACCTTGTAAGTTCAGATTAAATTTTCATTTTATCCTTTATATTAAGGGT
AAGTTTCTCAGGAAATCCTAAAGCGTTTCGATTTGCCTGGACCCTAACTC
CCTCCCCCGGGTGTATTAGACTTACATGATGACAGGGGTTGTCGCCCGGC
TTTCGACACTCGGTAAAAAGGAATAAAGATTTTATGAATTTCATCCCATA
TTTAGACTAATTTGACCAAATTTCGATGTTTTTAGGGGTAAAAAAATTAA
AATTATTCTACTTTTTCAAACCCTTAATGAGACTGAAATTTAATTTTCTG
ATTTTTCTAACCCTTACAGGGACTACCAGGTTCCAAAAAGCACAAAGCAC
AGTAAATACGAGTACGTTCAATCAGACCTTCGGGAAAGATGTGACCCAGA
GGGGTGCTTTAACGTCTGATGTCGACATCACCCGACATCTCACCGTAAAC
ACCTCCGCCACTATTTACTCCGCCCCCGGGCTAACCACCGTTTTCAAATT
TATCCAGCCTACTAAACTATTCCCTTTGTGATGATCTTTTGTGTTCTGTA
ATATAGAGTTTCAACTGGCTAGAATGAGCTTGTCTAAAGTCTAATATTAC
AAAATGTACAACAAGATATTCAACATTCTTTCGCAAAACTTGCAATAACA
TGAGTAATGAGTAAGATCTTTCTACATACATAGATTTATTAATATTTTGA
TAAGAATTTTTGCGAATCGACTTTAAAAAAAATATTTTCTCTGTTTTTGT
CTGAATACGTTTCTGCAAGAAATGGAATATTGCAATTTTCGGCTTGAAAG
CCGATTAGAAAGCTTTGATAGGCTCATTCTAAAACCATTAAAATTTAGGA
AATTTTGCAACGTGTGGAGTGTGCAATCCACACGTTGTTTTCGGGCGGCT
TCCCCGGTAATAGCTCTTATCGGAGTTTTTGATTCTTCTAAAAAAGCGAT
GCATTGTGGGATTGCTTCGGGAAAATTGCAATAAAAATCTCTTAGGAATT
CCTCGAGGGAATTCTATTGTAATACCCCCAAAACAATCCCTTGTGTATCA
CTTTTTTAGAAAAACCAAAAACTCCGATAAGGTTTATTGTCATTTGTCTT
TCAAATAGTTCATCCCTCTGGTGGAGAAGGGTCAGTTATTTTTTCCTCCT
TTTAGGCCTATTTGAATCTCTACATGAAAAAGCTCCTTGTGATATGGAGC
ACTCCCCACTGGGGAATGGGTCCTACTCCTTACGAAGTAGGAATTCCTCC
TTTTTCAAATTGGAACGCTTACCGTTGTCCAGACACCGCTGGTTCTGTGC
ACGCGAGACACAGATACCATGCTGCATAGTGGTGACACTCGAACTGTGCA
TATAGCTCGTCGCAGGCACAGAACGGGATGAGTGATACCACACACCCACA
TAAAACCCACACTCTTGTATCAGAGTAGTGGTACCCAAAAGCTCCTTGTG
GTAGTGCATAAAATTGAGACAGGGGTTAATATCATTGCGATGGAATTAAA
AATCTTTATTTATGAATGCTTTCTTTCTTGAGATTTGCTGACAGTTTCGT
TTTGTTTGTGCAAAACTAATTGAATTTATTTTGCTCTACAATTCTGATAC
CCTGTGTTTACAAGAAAATGATACCTTATTGATAGAAAGTTCGTTGCGAG
AAAAATCACCAAGCAACGAAATTTATTGCCAACGAAGATTGTCTACCGAT
AAGACAATCGACAGATCCGAAAATGCACGATCTATTTATTTATTTATTTT
TTTTTTTTTCATTTCAGCTGCTATTTCGATGGTGTGAATGGAGAACTCGC
AAACCTCTTTTTTACGACTGTCCCCTTGACTGTTATTTTGCTGACCAATA
TCATCTTATATCTTCTAACTTGGCGTCGCATAAAACAAGAAGAACCTAAA
TTTAAAGGCATCAATGGCCGCGAGGCTAGAATCGTACGCGCGTCACATCG
AGCGGCCCGCACAATGACTTTATTTGTAACAGCCTTTATAATACAATGGT
GGGCAATGTGTATTTACGGGATAGTACAGATGTTAGTTGAAGTGCCGATA
GAACTATTCCAATTCGTGACAACATTTTCGAACGTCGGTGGCATACTAAA
CGGAATTGTTTATTACATCATTAGACGGCGTTCCAGAGAAAAACATTCAG
AGGCTAGTTTAGAGCTATCGAAATCGGACGGTAGCAAAAAGTTTACGCGC
ATGACAAATTCGAATTCACCGACATTGGATGGTATCAGTAGTGGTCAGGA
AGAAGTTGAGGAATCATCCACTAAGCTTTGATTTGTTATGTCGGTACTAT
TGAGTTAAAATCCTGATGAACTTTGCAAGCAATAAGATGTGAAGGTCCAA
AGATTTGTGAGCATTCAGAATGACGGATTGAATCTAGTGCTTTTTACGAA
ACCTTTTTTACATTCAATCCGACGTTTG Coding sequence (CDS) from alignment at scaffold_276:243225..246252- >TCONS_00056488 ID=TCONS_00056488|Name=TCONS_00056488|organism=Clytia hemisphaerica|type=CDS|length=2238bp|location=Sequence derived from alignment at scaffold_276:243225..246252- (Clytia hemisphaerica) CTGCTATTTCGATGGTGTGAATGGAGAACTCGCAAACCTCTTTTTTACGA CTGTCCCCTTGACTGTTATTTTGCTGACCAATATCATCTTATATCTTCTA ACTTGGCGTCGCATAAAACAAGAAGAACCTAAATTTAAAGGCATCAATGG CCGCGAGGCTAGAATCGTACGCGCGTCACATCGAGCGGCCCGCACAATGA CTTTATTTGTAACAGCCTTTATAATACAATGGTGGGCAATGTGTATTTAC GGGATAGTACAGATGTTAGTTGAAGTGCCGATAGAACTATTCCAATTCGT GACAACATTTTCGAACGTCGGTGGCATACTAAACGGAATTGTTTATTACA TCATTAGACGGCGTTCCAGAGAAAAACATTCAGAGGCTAGTTTAGAGCTA TCGAAATCGGACGGTAGCAAAAAGTTTACGCGCATGACAAATTCGAATTC ACCGACATTGGATGGTATCAGTAGTGGTCAGGAAGAAGTTGAGGAATCAT CCACTAAGCTTTGATTTGGTTTTGGTTTTGGCAATCTTGCGGTGAAAATG CTAATCGTAAATACAAGAGGAAATAACCAATCCATCAGTACACAGATGGC TATTATACCTACTAAGAAAGTACTGATTGACGGCTGGGATCTCCCCGTCT ACGGGATCGAGCAAGGACAATTTGCTGCTATCCACATCCCAGCTTTAACG TGTATATTTCTAAGTTTGATTGCCGCTATTTGCGTATTGGTATTTTCATT TAAGACGAAAAGTTTTCGAACGTTTTTCATGTGGAATAAAAGCGAACGTT TTGTTGTTTATCTGGCAATCTGTGATGGTCTGTTTAATATATGCCATTCC TTGGATCATTTACATATCTTCATAACACATGATCACCCGTATCCCAAAAG CCTTTGCGAGTTTTATGGATTTATGCTAGCTGAATTTATAACAGCCCAAA ACCTTATGGTTAACGTTGTCTCCATTAATGCATTTGTTTTGATCTATTTT CGAACCAATATGGATTTTGGTAAATGTGATTACAAATTGTTATTGTGGAC CTTTGGACTTCCGTTTGTGGCGGCGATTGTAGCACTTTCCCTTGGCACCA TGGGGCCGAATGGGACCTTCTGCTATTTCGATGGTGTGAATGGAGAACTC GCAAACCTCTTTTTTACGACTGTCCCCTTGACTGTTATTTTGCTGACCAA TATCATCTTATATCTTCTAACTTGGCGTCGCATAAAACAAGAAGAACCTA AATTTAAAGGCATCAATGGCCGCGAGGCTAGAATCGTACGCGCGTCACAT CGAGCGGCCCGCACAATGACTTTATTTGTAACAGCCTTTATAATACAATG GTGGGCAATGTGTATTTACGGGATAGTACAGATGTTAGTTGAAGTGCCGA TAGAACTATTCCAATTCGTGACAACATTTTCGAACGTCGGTGGCATACTA AACGGAATTGTTTATTACATCATTAGACGGCGTTCCAGAGAAAAACATTC AGAGGCTAGTTTAGAGCTATCGAAATCGGACGGTAGCAAAAAGTTTACGC GCATGACAAATTCGAATTCACCGACATTGGATGGTATCAGTAGTGGTCAG GAAGAAGTTGAGGAATCATCCACTAAGCTTTGATTTGGTTTTGGTTTTGG CAATCTTGCGGTGAAAATGCTAATCGTAAATACAAGAGGAAATAACCAAT CCATCAGTACACAGATGGCTATTATACCTACTAAGAAAGTACTGATTGAC GGCTGGGATCTCCCCGTCTACGGGATCGAGCAAGGACAATTTGCTGCTAT CCACATCCCAGCTTTAACGTGTATATTTCTAAGTTTGATTGCCGCTATTT GCGTATTGGTATTTTCATTTAAGACGAAAAGTTTTCGAACGTTTTTCATG TGGAATAAAAGCGAACGTTTTGTTGTTTATCTGGCAATCTGTGATGGTCT GTTTAATATATGCCATTCCTTGGATCATTTACATATCTTCATAACACATG ATCACCCGTATCCCAAAAGCCTTTGCGAGTTTTATGGATTTATGCTAGCT GAATTTATAACAGCCCAAAACCTTATGGTTAACGTTGTCTCCATTAATGC ATTTGTTTTGATCTATTTTCGAACCAATATGGATTTTGGTAAATGTGATT ACAAATTGTTATTGTGGACCTTTGGACTTCCGTTTGTGGCGGCGATTGTA GCACTTTCCCTTGGCACCATGGGGCCGAATGGGACCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00056488-exon-scaffold_276-1575043694:245647..246252 | TCONS_00056488-exon-scaffold_276-1575043694:245647..246252 | Clytia hemisphaerica | exon |
TCONS_00056488-exon-scaffold_276-1575043694:243225..243885 | TCONS_00056488-exon-scaffold_276-1575043694:243225..243885 | Clytia hemisphaerica | exon |
TCONS_00056488-exon-scaffold_276-1510915933:245647..246252 | TCONS_00056488-exon-scaffold_276-1510915933:245647..246252 | Clytia hemisphaerica | exon |
TCONS_00056488-exon-scaffold_276-1510915933:243225..243885 | TCONS_00056488-exon-scaffold_276-1510915933:243225..243885 | Clytia hemisphaerica | exon |
TCONS_00056488-exon-scaffold_276-1491911889:245647..246252 | TCONS_00056488-exon-scaffold_276-1491911889:245647..246252 | Clytia hemisphaerica | exon |
TCONS_00056488-exon-scaffold_276-1491911889:243225..243885 | TCONS_00056488-exon-scaffold_276-1491911889:243225..243885 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_276 | supercontig | scaffold_276:243225..246252 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
Term | Definition |
GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
Term | Definition |
GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
Term | Definition |
GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
cellular_component |
GO:0016021 |
integral component of membrane |
molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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