TCONS_00056489 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00056489
Unique Name	TCONS_00056489
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	944

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_276:252344..256931-

transcript sequence

>TCONS_00056489 ID=TCONS_00056489|Name=TCONS_00056489|organism=Clytia hemisphaerica|type=transcript|length=944bp
AGGGTATTGGGAGAAAATGAGATCGGGTTGCTAGTCTCGTTTAAAACTGG
AAACTTGCAAAATGGCGATTGAAAGACAATTTGATTCAATCTTCAAGTTT
TTCAAACACAGATTACTCACTTTTTTCAACCGTAAATTGTGTTCATATTT
CTGTAAACAGTAACTACACTAACTCAACTACATTTGTGTAAAGTTTGGAG
CTTCAAACTTTTGCGATGCTGAAGATATGTTAAGATATCTTTGATATAAT
ACTTTATTCATAATTTACTGAAATTAGGGTTATCCTGTATTATGTCATAC
AGAGTTGATACACTTGgtataattttgaattttagaggTAGTAAAGAATG
CCTAcaataaatttgaataaaagaacaatgttttcttggaataagaagaa
aaaagagCTTGGTTTTGAATTTAAATCTCATCAATTTGCAAACTATGTTC
TACAAAGATTTGATCGGACCGTGTCTTCCTCTAGTGAGACTGAAGAAGAA
ATACTTGCtgatgaaattttttatgtAGTGTCGGATAAAAGTGTAAATGT
AACTGGCTGGTGTTGGCAGTGTTGCAGATCCTCGTGACAGTGAAACAACA
ACAAATCATAATACAAGTGTTAGTGGTATTAAACTTACTGGATGAGACTA
ATCACCAACAatAGTTGAACGTGACTCCAAATTGTGTTGCTGATTCTAAT
CCACCTGTACTTGGTATGTTTGGAATAacaatttttccttcactcAGCAT
TGATAACTCAGCATTGATAACTCAGCATTCTTTctgtaaataattatttt
ggcctttcatttgcatttTAGGTGCCTGTGATATTGAATTTTCCTAAACT
CGCATAAAATTTAGATTTCTTAATGATCATATTGATGTAACAAATTTGTT
GGATGTGTATATTtctgaatatatattttttaatatatagGAAC

Run BLAST on NCBI

transcript from alignment at scaffold_276:252344..256931-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00056489 ID=TCONS_00056489|Name=TCONS_00056489|organism=Clytia hemisphaerica|type=transcript|length=4588bp|location=Sequence derived from alignment at scaffold_276:252344..256931- (Clytia hemisphaerica)
AGGGTATTGGGAGAAAATGAGATCGGGTTGCTAGTCTCGTTTAAAACTGG
AAACTTGCAAAATGGCGATTGAAAGACAATTTGATTCAATCTTCAAGTTT
TTCAAACACAGATTACTCACTTTTTTCAACCGTAAATTGTGTTCATATTT
CTGTAAACAGTAACTACACTAACTCAACTACATTTGTGTAAAGTTTGGAG
CTTCAAACTTTTGCGATGCTGAAGATATGTTAAGATATCTTTGATATAAT
ACTTTATTCATAATTTACTGAAATTAGGGTTATCCTGTATTATGTCATAC
AGAGTTGATACACTTGGTATAATTTTGAATTTTAGAGGTAGTAAAGAATG
CCTACAATAAATTTGAATAAAAGAACAATGTTTTCTTGGAATAAGAAGAA
AAAAGAGCTTGGTTTTGAATTTAAATCTCATCAATTTGCAAACTATGTTC
TACAAAGATTTGATCGGACCGTGTCTTCCTCTAGTGAGACTGAAGAAGAA
ATACTTGCTGATGAAATTTTTTATGTAGTGTCGGATAAAAGTGTAAATGT
AACTGGCTGGTGTTGGCAGTGTTGCAGATCCTCGTGACAGTGAAACAACA
ACAAATCATAATACAAGTGTTAGTGGTATTAAACTTACTGGATGAGACTA
ATCACCAACAGTAAGTTGTTTTAATTGATTGTTTGATGGTGTGTGCTTGT
CTTAAATCTGTTAGTTGAAAAAATCTCTGCGTTAAAACATGAACTCTTTT
CCTGCTTAAACTTGAATTTTTTTGTTATTAAATCAACTTCTGCGAGCCTG
ATTACATAGTTCGATTGTTTATCGATTTATATTTATTTTTTCTTAATCAT
TTATCGATCGAGAATATCTGAGATAAAAACCTCTTGTACTTTTAAATTCT
GAAATTATGAAAAACTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNTGATCTCTTGAGCTAGTAGAAAAGTTTGCTTTAT
CTATCAAGTTTATGGTAGTCGAGAACGAGGGGTGGATCATCTGGAAAATT
TGTACAAGATTTTGTTGATTTTATGTGATGTGTTATTTTTCTTGTGATTT
ATCTGTGATGTTTTGCGAATTTTAACGTTTTTGTGATTTTAGAATTTTTT
TCCAGTGGTTTACACCTCGATCTAGAATTTTCCTTATCTTACACTCATCG
TATTGAAAAGTAAAGATGCAGGATTCTAATGAGTTTAATTTAATTATTTT
TAAGATAGTTGAACGTGACTCCAAATTGTGTTGCTGATTCTAATCCACCT
GTACTTGGTATGTTTGGAATAACAATTTTTCCTTCACTCAGCATTGATAA
CTCAGCATTGATAACTCAGCATTCTTTCTGTAAATAATTATTTTGGCCTT
TCATTTGCATTTTAGGTGCCTGTGATATTGAATTTTCCTAAACTCGCATA
AAATTTAGATTTCTTAATGATCATATTGATGTAACAAATTTGTTGGATGT
GTATATTTCTGAATATATATTTTTTAATATATAGGAAC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_035586	XLOC_035586	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00056489-exon-scaffold_276-1575043694:256272..256931	TCONS_00056489-exon-scaffold_276-1575043694:256272..256931	Clytia hemisphaerica	exon
TCONS_00056489-exon-scaffold_276-1575043694:252344..252627	TCONS_00056489-exon-scaffold_276-1575043694:252344..252627	Clytia hemisphaerica	exon
TCONS_00056489-exon-scaffold_276-1510915933:256272..256931	TCONS_00056489-exon-scaffold_276-1510915933:256272..256931	Clytia hemisphaerica	exon
TCONS_00056489-exon-scaffold_276-1510915933:252344..252627	TCONS_00056489-exon-scaffold_276-1510915933:252344..252627	Clytia hemisphaerica	exon
TCONS_00056489-exon-scaffold_276-1491911889:256272..256931	TCONS_00056489-exon-scaffold_276-1491911889:256272..256931	Clytia hemisphaerica	exon
TCONS_00056489-exon-scaffold_276-1491911889:252344..252627	TCONS_00056489-exon-scaffold_276-1491911889:252344..252627	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_276	supercontig	scaffold_276:252344..256931 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.387777	0.242869	0.447782	0.341588	2.54983	1.06315	0.799159	1.16492	0.467369	1.32491	0.490704	0.760661	0.482254	0.658222	0.230029	0.397019	0.349952	0.480787	0.350514	0.391415	1.97207	3.51692	0.626426	0.860691	0.272226	0.799371	1.05175	1.03495	0.589168	0.533347

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00056489 vs. Swiss-Prot (Human)

BLAST of TCONS_00056489 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00056489 (transcript) - C. hemisphaerica