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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056495 ID=TCONS_00056495|Name=TCONS_00056495|organism=Clytia hemisphaerica|type=transcript|length=1372bp
CCCGGTATTCTAATGAAGAACTACAAGTTGCCCTATCAAAATGTAGAGAA
GGTCTCAGCATTAGAGAGTGTTCAAAGAAATATGGTATCCCTAAAAGCAC
ACTGTGGGATAAATTGTCTTGTCGTACACCAGCAACTGTCCTTAGACCTG
GTAGATCATTCAAAGTTTCAGATGCAGTAGAGAACAGGCTAGTCAATTGG
ATTCTCAAGATGAACGAGGATGGATTCAAAGTCCAAGAAAAGCAAATCAT
AGAAGCCGTGAAATTGTTTCATGACAAATCAGAAGGTGTCAATGCAAATG
ATAATAGTCACAGTAAACCTGGGAAGGCTTGGTATAAAAACTTCTTAAAA
CGTTACCCAGCAGCACAACACAATCTGAGTGTCAATCATCAAAAAGCAGA
ATACTCAATTGAAATGGCTTGGTATGACGAAACTGTCGATACTGAAGTTC
CTGTTTTAGTAGAGAGTGTTGAATCTGTACAACCTAAACAACCAGAACCT
ACTACACCAAATCAAATCAGGTCAGTCCTTGATCATATAGAGCAGACTAT
TGGTGAAGAGAAATTAAATTATTACAGACAATGGAAAGAAAATGGTGAAC
TTTCAAAGAAAGATCCTTTATACACTGCTTGGTACGCTCTTGCAATGGAT
CTAGATCGTATTCAtaattccaataaaaacaaaaggaaaaggAAATCGGA
ACAGCCGAGGGTTAATGGAAACTATGTACATCAACATCATCATTTAGAGA
ACTCAAAAGTGGAACATCATCCATTGGAAAATGATTTGATAGATCTGAAC
TCAACAACAACTACCGCTCCAAATGTTGAATTCACTGaaaataaagacaa
tagaaCTGTTGAAAATAACTTACCGCAGTCACATTATAATGGAGCATATG
TGagcaatgaaagtgaaagtgttcCACCAGATGATCAACTTTTGGTAGGT
TCAAAGGAAACTAATTCAATGTCTACAGAAGATCATACAAATTTTATAAA
GCCCCATCGAAGAAGAACTATGATGCTATCGTATAGTTCAAAATGATAAT
TTATTGCTAATTCTTTGTTATCACTATTATCCTCTTGCTTCATTCAACTT
CCCCCGAGCAAAGATTACTAAGTAGTTTTTGaaataacaaaaacaagcaa
agaaaatcTTCCTGCTTTTGCCTACCGTGATATATccacaattttttatt
tcagaaaaccTGCTAAACTTAATCCTGAAAAGACCGTAAAAATCCTTTCA
AATTCAATACCTGTTTTTACCTGAATTTATTTACATatgagaatttttat
ttttttgtatattgATATTCAAAGAGCTTGTGTGTAGattccaaatatat
ttttctattcaaatttttatca Run BLAST on NCBI transcript from alignment at scaffold_276:344732..346754- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056495 ID=TCONS_00056495|Name=TCONS_00056495|organism=Clytia hemisphaerica|type=transcript|length=2023bp|location=Sequence derived from alignment at scaffold_276:344732..346754- (Clytia hemisphaerica)
CCCGGTATTCTAATGAAGAACTACAAGTTGCCCTATCAAAATGTAGAGAA
GGTCTCAGCATTAGAGAGTGTTCAAAGAAATATGGTATCCCTAAAAGCAC
ACTGTGGGATAAATTGTCTTGTCGTACACCAGCAACTGTCCTTAGACCTG
GTAGATCATTCAAAGTTTCAGATGCAGTAGAGAACAGGTACTTTATATCT
TGCAAACCACTTTAGCTCAAACATAATACCTTCCTTTTAAAGGAACTGGT
ATAAAATATTTATATGTTGACCTGTATAAGCCTGAGAATATGTCTCACTA
TTATTATCAATTTTTTTTACCAGAATTGTAGGCCATTAAAGAATTTGAAG
TGGTTTAAAAGTTGACGATGATGATTCTTGATTAGTTGCTTGATTTTATC
TCACAGGATGCAACTTTAAAATTGTTTTTATTTTGTTAACCTTTCCAGGC
TAGTCAATTGGATTCTCAAGATGAACGAGGATGGATTCAAAGTCCAAGAA
AAGCAAATCATAGAAGCCGTGAAATTGTTTCATGACAAATCAGAAGGTGT
CAATGCAAATGATAATAGTCACAGTAAACCTGGGAAGGCTTGGTATAAAA
ACTTCTTAAAACGTTACCCAGCAGCACAACACAATCTGAGTGTCAATCAT
CAAAAAGCAGAATACTCAATTGAAATGGTATGGTTTTATTTATCAGAGAA
GTAATTTTAAAGGAAAATTTGATGATCCATAAAATCATAAATTTGACTTT
TGGGAAAATCCAGGAAAATCTAGATGATTCTAATCTGTTGATTAATCAGG
GTTAAATTTGACCTTTAAAAATCTAGATCAGAACTTTTTCCTATTATTAC
AAGGTGTCCAGTTCATTCCTCAAACTTTGAATATTAGTATAACTTTCAAT
ATTCTTTAAGACTTCTCTGGCAAAAAGAAAGTGATAATAAATATAGAGAG
AAAAATATATATTACAAGTTTGTTTTAAATTTAAAAAGTTGTTATTGACT
CTCCAAAATTAAATAATATAAGCTACTAAAATCGCTTACCTCTAACGAAT
TAACTTTTTAGTTGCAGGCTTGGTATGACGAAACTGTCGATACTGAAGTT
CCTGTTTTAGTAGAGAGTGTTGAATCTGTACAACCTAAACAACCAGAACC
TACTACACCAAATCAAATCAGGTCAGTCCTTGATCATATAGAGCAGACTA
TTGGTGAAGAGAAATTAAATTATTACAGACAATGGAAAGAAAATGGTGAA
CTTTCAAAGAAAGATCCTTTATACACTGCTTGGTACGCTCTTGCAATGGA
TCTAGATCGTATTCATAATTCCAATAAAAACAAAAGGAAAAGGAAATCGG
AACAGCCGAGGGTTAATGGAAACTATGTACATCAACATCATCATTTAGAG
AACTCAAAAGTGGAACATCATCCATTGGAAAATGATTTGATAGATCTGAA
CTCAACAACAACTACCGCTCCAAATGTTGAATTCACTGAAAATAAAGACA
ATAGAACTGTTGAAAATAACTTACCGCAGTCACATTATAATGGAGCATAT
GTGAGCAATGAAAGTGAAAGTGTTCCACCAGATGATCAACTTTTGGTAGG
TTCAAAGGAAACTAATTCAATGTCTACAGAAGATCATACAAATTTTATAA
AGCCCCATCGAAGAAGAACTATGATGCTATCGTATAGTTCAAAATGATAA
TTTATTGCTAATTCTTTGTTATCACTATTATCCTCTTGCTTCATTCAACT
TCCCCCGAGCAAAGATTACTAAGTAGTTTTTGAAATAACAAAAACAAGCA
AAGAAAATCTTCCTGCTTTTGCCTACCGTGATATATCCACAATTTTTTAT
TTCAGAAAACCTGCTAAACTTAATCCTGAAAAGACCGTAAAAATCCTTTC
AAATTCAATACCTGTTTTTACCTGAATTTATTTACATATGAGAATTTTTA
TTTTTTTGTATATTGATATTCAAAGAGCTTGTGTGTAGATTCCAAATATA
TTTTTCTATTCAAATTTTTATCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056495-exon-scaffold_276-1575043694:346568..346754 | TCONS_00056495-exon-scaffold_276-1575043694:346568..346754 | Clytia hemisphaerica | exon |
| TCONS_00056495-exon-scaffold_276-1575043694:346078..346306 | TCONS_00056495-exon-scaffold_276-1575043694:346078..346306 | Clytia hemisphaerica | exon |
| TCONS_00056495-exon-scaffold_276-1575043694:344732..345687 | TCONS_00056495-exon-scaffold_276-1575043694:344732..345687 | Clytia hemisphaerica | exon |
| TCONS_00056495-exon-scaffold_276-1510915933:346568..346754 | TCONS_00056495-exon-scaffold_276-1510915933:346568..346754 | Clytia hemisphaerica | exon |
| TCONS_00056495-exon-scaffold_276-1510915933:346078..346306 | TCONS_00056495-exon-scaffold_276-1510915933:346078..346306 | Clytia hemisphaerica | exon |
| TCONS_00056495-exon-scaffold_276-1510915933:344732..345687 | TCONS_00056495-exon-scaffold_276-1510915933:344732..345687 | Clytia hemisphaerica | exon |
| TCONS_00056495-exon-scaffold_276-1491911889:346568..346754 | TCONS_00056495-exon-scaffold_276-1491911889:346568..346754 | Clytia hemisphaerica | exon |
| TCONS_00056495-exon-scaffold_276-1491911889:346078..346306 | TCONS_00056495-exon-scaffold_276-1491911889:346078..346306 | Clytia hemisphaerica | exon |
| TCONS_00056495-exon-scaffold_276-1491911889:344732..345687 | TCONS_00056495-exon-scaffold_276-1491911889:344732..345687 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_276 | supercontig | scaffold_276:344732..346754 - |
Blast
The following BLAST results are available for this feature:
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