TCONS_00056499 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056499
Unique NameTCONS_00056499
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length486

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056499 ID=TCONS_00056499|Name=TCONS_00056499|organism=Clytia hemisphaerica|type=transcript|length=486bp
ACAATGGTTTTGATAccatttgaaagATCCTCAAAGGTCAAGGCGACGCC
GACGACGACGCCGAAGAAGACGACGAACCGCCACCGCCACTGGAACATCA
ACAACCGGTACTGGAACATCAACTGGAACTGGAACATCAACTGGAACTGG
AACAACAGGAATCAATGCAGCCAGAGCTTTATTGGACGCAGAAGCAACCT
GTCCAGAAAGACCTGTAGGGACACCATGTTGCGGATTGGAACGTAGAACC
TCTTGTAACAGGACATCCCGAAGACGAAGCGGAAGAAGACGAGGCCAAAA
CGGCAAGCGCTAAAACATGACATCATAAtacacaccattgcaatgtcttc
cacggaatCAACAGCTTGACTAATTTTACATCACTTAAGGCCGgtgtcca
ctttcgcgcgaagcgcgcgaaacttttcacgttatttgtaacgtcattgg
ttgattgaaaaaagaagcaattccattggtcaaaat
Run BLAST on NCBI

transcript from alignment at scaffold_276:367307..372095-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056499 ID=TCONS_00056499|Name=TCONS_00056499|organism=Clytia hemisphaerica|type=transcript|length=4789bp|location=Sequence derived from alignment at scaffold_276:367307..372095- (Clytia hemisphaerica)
ACAATGGTTTTGATACCATTTGAAAGGTATTTTTTATACTCTTTCTAAAA
GCATTCGGTTTATGCCCTTTTAAATCAAGTGGTCAGGAGCCATCGCCATA
AGTCAAAAACTTGGTATATGAGCTCATTTTGGACGTTCATATACGTCATT
CGGGTCTGAAGGGTTAATATGTTATTATTTTCTTGCTTATTTACTTAATT
ATTTATTAGCTTTAAAAATTGCTCTATTTCGGCTCTGCGAGGGAGAAAAA
TACACCTTCCTTCTATGTTGTGACGTAGGTTACGCGGACGAATGAATGTA
ATGTTGTAAGCAATGAAGTATAAGCCCGAAGGGCTAGAAGTCAATCTTTT
TGGTAGGATTTGAACCCGGGGGGGGGCACTCGATTTTGAAAGGACGGTAT
GTGCCGCGCAAGATCTGCTTTTCAAAATCGTACCCTTACAGTGCAGTTCA
ATATGGCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNGTCGTCAAAAATGCGGCGCATTTTTTAAGGCTTC
ACTTTTTCTTGTCTGAGAAAGGTTAGAGATTAAACTCTAGCCCTTCGGGC
TTTAAACTCAATGGTTGTAAGTCTGCCCCAGTAAAACAGGAAAAATCTTG
TAAGAAGTTTTTTATATTTTACCATATTAATGCATATTGTGTCAAGTGTC
AAGGGCTATACTATCCTTTGTCGTGATTAAATAATCTTTAAAAAGCTTTC
ACTTTACGAGCCCTCGAGCCTTATTAAAGGGACATAAAAGTAGTAAAATG
TAAACATTGTGCGAACCACGTGTCATTAAAGAAAACAATTAAAATCACCT
GTCCAAAACAAACTTGTAAAACAATTGAAAAATCAAAATTAGCCATGTTT
GTTTTTTTGTTTTTTTTAATTTTGACATGTGACATTTGTTTTGATTTTGT
ATCCCGCTGCATACGGTTTGTTTACAAATTTCGTCAGTATTTTTATGTCC
CTTTAACCTGGTTGCTTAAAAAAATGTGGGGGGGGGACTTCTTTTTGCTC
TCTTTCATTTCTTTGAAAATAACAAAACCTAGTCGCTTAGTCCTACGTCA
CAAATTTTGTTGCCATGGTGATATAAATGAATTTTTAATTGCTATTATTC
GGTATAGAAAAAGTAAACATTTTTGGAATACACCTATTTCCTATTAGCAG
ATTCATGCAAAAGTCACGAAAAAACGTCGAGTAAACAAACTTTTGATTGG
CGGAGGCATGCAAAGATTACCTCATACTCTGGACATTTTGAAAAATATGC
TTGTATATGCAATATTTCAGCCAATCAGAGAATTTCTCGACGTTTTGACT
CTTTTATATGAATCCGCTAATAGGAGATACGTGTATTGTGTTAATTCGTG
TTGTGCTCTTTACGAATTTAGTCTAAAGTTTCATTGAAACAGATTGAAAA
TCACACATATTAATTCTTCTTTAATATATTGGCCATCAAAGCCTTATGTT
CTTATATTTTAATTATTTCTTTGCATTTATTCTTCATTACAGATCCTCAA
AGGTCAAGGCGACGCCGACGACGACGCCGAAGAAGACGACGAACCGCCAC
CGCCACTGGAACATCAACAACCGGTACTGGAACATCAACTGGAACTGGAA
CATCAACTGGAACTGGAACATCAACTGGAACTGGAACATCAACTGGAACT
GGAACAACAGGTATTCTCCCAATAATTCATTAATTATTGCTTTCCTTCCT
TTTTAACCTTTCCAGCGCCCAACATTTTCTTTTTAAATGTGAAAATTCAA
AATTTCAAATTGGCAGCATAAAAGCTTGTAACTTGAGAGTTATTATTTTT
CTAAGCTATTTTTCATGTGACGTTATAATTACAGTTTTGTGACGTCATTA
TGACGTCATCGCAAAAATGACAACTTGAGTTTTTTGTAGCTTTTAGCTTT
TCGAGTTAATTAATTTCGAGATTTTTGTGGTGACGTCACTCTCTCGTGAC
GTCGTAAAAACTGGAATTATGACGTCACATTGAAAATAACTCGGAAAAAT
AACTCAGGAAATCCAGGCCTCTTTTAAATCAAGTGGTCGGGAGTTATAGC
CTTAAGTCTGGGACTTGGTATATTAGGATATTCAGAACGTTTATACACGT
CTGCCGGGGTTTAAAGGGTTAAATCCTTTTTCAAGTATAAAAGTATAAAA
TAATAAGGTTCTGAGAAAGTTACTTGATTAGTTACCCAGCTGGCACAAAA
CGTTGTTTCAACGTTCATCTAACGTTATATGGACGTTATGAACGTTAAAT
AAACGTTATATGGACGTTATGAACGTTAGATAAACGTTGAAACAGCGTTG
TGTGCCTGCTGGGTAGTGAAACAGTGATAACTGTGTTTACTCTCTTTATT
TGAATTCACAGGAATCAATGCAGCCAGAGCTTTATTGGACGCAGAAGCAA
CCTGTCCAGAAAGACCTGTAGGGACACCATGTTGCGGATTGGAACGTAGA
ACCTCTTGTAACAGGACATCCCGAAGACGAAGCGGAAGAAGACGAGGCCA
AAACGGCAAGCGCTAAAACATGACATCATAATACACACCATTGCAATGTC
TTCCACGGAATCAACAGCTTGACTAATTTTACATCACTTAAGGCCGGTGT
CCACTTTCGCGCGAAGCGCGCGAAACTTTTCACGTTATTTGTAACGTCAT
TGGTTGATTGAAAAAAGAAGCAATTCCATTGGTCAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035591XLOC_035591Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056499-exon-scaffold_276-1575043694:372070..372095TCONS_00056499-exon-scaffold_276-1575043694:372070..372095Clytia hemisphaericaexon
TCONS_00056499-exon-scaffold_276-1575043694:368413..368503TCONS_00056499-exon-scaffold_276-1575043694:368413..368503Clytia hemisphaericaexon
TCONS_00056499-exon-scaffold_276-1575043694:368336..368376TCONS_00056499-exon-scaffold_276-1575043694:368336..368376Clytia hemisphaericaexon
TCONS_00056499-exon-scaffold_276-1575043694:367307..367634TCONS_00056499-exon-scaffold_276-1575043694:367307..367634Clytia hemisphaericaexon
TCONS_00056499-exon-scaffold_276-1510915933:372070..372095TCONS_00056499-exon-scaffold_276-1510915933:372070..372095Clytia hemisphaericaexon
TCONS_00056499-exon-scaffold_276-1510915933:368413..368503TCONS_00056499-exon-scaffold_276-1510915933:368413..368503Clytia hemisphaericaexon
TCONS_00056499-exon-scaffold_276-1510915933:368336..368376TCONS_00056499-exon-scaffold_276-1510915933:368336..368376Clytia hemisphaericaexon
TCONS_00056499-exon-scaffold_276-1510915933:367307..367634TCONS_00056499-exon-scaffold_276-1510915933:367307..367634Clytia hemisphaericaexon
TCONS_00056499-exon-scaffold_276-1491911889:372070..372095TCONS_00056499-exon-scaffold_276-1491911889:372070..372095Clytia hemisphaericaexon
TCONS_00056499-exon-scaffold_276-1491911889:368413..368503TCONS_00056499-exon-scaffold_276-1491911889:368413..368503Clytia hemisphaericaexon
TCONS_00056499-exon-scaffold_276-1491911889:368336..368376TCONS_00056499-exon-scaffold_276-1491911889:368336..368376Clytia hemisphaericaexon
TCONS_00056499-exon-scaffold_276-1491911889:367307..367634TCONS_00056499-exon-scaffold_276-1491911889:367307..367634Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_276supercontigscaffold_276:367307..372095 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.181151	0.249793	0.661668	0	1.96426	3.01666	2.69304	3.47573	3.56531	2.67569	4.77682	1.18489	3.27436	1.84805	0.806479	0.34494	34.6918	41.9813	0	1.18068	120.803	106.424	90.017	106.653	82.6965	99.5769	1.0943	0.857349	10.5307	7.03965
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056499 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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