TCONS_00056517 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056517
Unique NameTCONS_00056517
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1474

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056517 ID=TCONS_00056517|Name=TCONS_00056517|organism=Clytia hemisphaerica|type=transcript|length=1474bp
ttcagtggaaaaatagataaaataaaaacaatacaaatttatgaaaaatg
atggatactttttattcatttggaTCATGGTCGTTTTGAAGATAAAGACC
TGATAATAACCAACAAAATGTCCTGGAAGGGTAATGCCACGTATCAAAAG
CAAGAGACCAAAGGAGGTATTTACAAAGTATGTTTGGCTGGCCGAATGGA
ATCTGGCAAGActacaatttttcaaataatttctgGAAATCCCATCAATG
AAAACCCAAGTAATGACTTCTTTGAATATCAATATGATGGTCTGGGGAAG
ATAGTGCTGAACGACACTGCAGGACGTGAGCATTTCACCAGTATGACAAT
CGGAACATATTATCGTGGAGTACATGTTATTGTTTTCGTGTATGATGCCA
CAGATCAAGAAAGTTTAAACTACATTGGCGGAGAACTAGAGGAGTTAAAA
AATCGTAGTGAATTCGAGAATGTTCAAATGATATTAATACGTAATAAATG
TGATGAGCCGCCTTCTCGTATAGCAGTCACTGAAGGCGATGAAGAGACTT
TCGTTGCGAATCGGAGTAATTTATTGGGTGACAGACTTAAATTAAGACGA
AAGGTATCAGCGAAATGTGACCCTGAAccaataaagaaattatttttcga
aCATTTACATGACGTCATTAAAGGGAAAGGTACTACCCCTGATAATGAAC
AATTTATAAAACTTCGAGAGAAAAGATCTGCGAGTACCAAAAGTACGACG
AATAGTTCAGAGAAAGATGACAAGTGTCCTTGTTGTATTCAATGAGTTAA
TGATTTTATCAGTCCTACAGGAAATGTTTCGGAGACTTTAGACTCTCCAG
AATAAGAGTAAataaggcgtacaaactttcgcgagtttACAAAGTTTTGC
GAGACCGAAGAATCGCGGTATTTACgacataaactttcgcgaattcaacg
aaaaaatattttataaaaattggcttAGAAGGACAAATTATTCTTGAATt
tgattgaaactttttttcttttgacattTGAGGCTTcaacaggctaaaaa
gtgccataaatcttctattttatttaaAGTTAAAAGTTACACAGATTTTC
TACTCAAGAAATCTTCGCGAGCATAAATCGAATTACGTGAAAGTcgtgaa
aatcgcgaaagttcgCAAAGAATAAGGTGTAAAACGTAAAACACATTGGT
ATTACACAAAGACACTTGTGCATTTGATACATGGGCCCCGGTGACACCTT
TAAAGTGAGGGGGCAAATTATGGGAAAAAACCATGGTTGGACTTGGAcga
tgaatttttgattttttcttttgctatttacaccttttttacaacataca
gggtgtccggaaaaaaagtatcgagtcgtaccacttctttaaaaagaaag
ttcttgtgtgtgttgttttactaaatttgcaatgcttatcaaaatttctc
tctgtgtcatattaattgtcatga
Run BLAST on NCBI

protein sequence of TCONS_00056517-protein

>TCONS_00056517-protein ID=TCONS_00056517-protein|Name=TCONS_00056517-protein|organism=Clytia hemisphaerica|type=polypeptide|length=225bp
MSWKGNATYQKQETKGGIYKVCLAGRMESGKTTIFQIISGNPINENPSND
FFEYQYDGLGKIVLNDTAGREHFTSMTIGTYYRGVHVIVFVYDATDQESL
NYIGGELEELKNRSEFENVQMILIRNKCDEPPSRIAVTEGDEETFVANRS
NLLGDRLKLRRKVSAKCDPEPIKKLFFEHLHDVIKGKGTTPDNEQFIKLR
EKRSASTKSTTNSSEKDDKCPCCIQ
Run BLAST on NCBI

transcript from alignment at scaffold_276:704102..708618-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056517 ID=TCONS_00056517|Name=TCONS_00056517|organism=Clytia hemisphaerica|type=transcript|length=4517bp|location=Sequence derived from alignment at scaffold_276:704102..708618- (Clytia hemisphaerica)
TTCAGTGGAAAAATAGATAAAATAAAAACAATACAAATTTATGAAAAATG
ATGGATACTTTTTATTCATTTGGATCATGGTCGTTTTGAAGATAAAGACC
TGATAATAACCAACAAAATGTCCTGGAAGGTAAAATGATTAAAATTATTT
TGTTTTCTAGAAAGTTAAAAAAAACCAATAAAGTTGACTTTTATGTTCAG
GAATTAAACGAAATAGAACTGAGAAAAGCCATCATTATATTCTAGCCATA
TTTTCACTATTAAACCACTTCCAGACCTGAACTAAAATATTAATTTTAAA
TCGCTTTTTGTTCTGCCAACTTTGTCAATTAAATGAATCACTTTGAAAAA
ATCAAGAAAAGGGATAAAATATTTTCCTTGAAAGGTTTGTAAGGTTGTAG
CTTGAATTATTATCGAGATATGACTGTTTTGTTTTTATTCTCAGGGTAAT
GCCACGTATCAAAAGCAAGAGACCAAAGGAGGTATTTACAAAGTATGTTT
GGCTGGCCGAATGGAATCTGGCAAGACTACAATTTTTCAAATAATTTCTG
GAAATCCCATCAATGAAAACCCAAGTAATGACTTCTTTGAATATCAATAT
GATGGTCTGGGGAAGGTAATAATTGATTGTTGAAATAATCTATTTTACAT
TCTGTTAATTATATGTTTAGCTTTGAAGAACAATGTACAAAGTTCTCATG
TGAGGTGCAAAAAGAGGTTTTTCCCTCTCCAAATTCAACGAAATTCTGCA
AAATTTTACAAATCTTGCCAATGTTATTGTTTATAGTTCATTTCCGTTTG
AGACAAAAAACTTTGTTTGAGAACTGGAAAAAGAGTTCAATTTTCCTTTT
AAAATACACAACATATTTACATATTAAAAATATTGACGTATCTTTTTTTA
AAGTATACCATCGAATCAAAAATTTTTTTTTAATTTGATTATTATATTTC
AAAACAGTTGCGATTGCTTTTTTTGTGATTCTACAATTCTCCAGTATAGG
GCTCCTAAAAGGTTGTATGGCATTCATCAATAAAATCAAAAAGTCAAAGA
GTGGTGCATGTTGTTCTTTGGACGAGGTCAGCGACTTCAGATTGTTGTGA
TCTGTGATCTGTAGACTTGTTCCAAAGTCATAAACAAAAACTCCAAATAT
TTTCGTCTTAACCTTTACCACGCCGAAGCCGTAAATTTACGTTCTAATAT
ATAGCCAAAGCCGTAAATATACGTTTTTCATGGGGTGTTAAGAAAAGCCG
CCCTACCGCCTTAAAGACGCCTTTAAATCCCGGGAAATGTCTTATATGAC
GGAGAGAAAATGTAAACAAACTATTTTCAATAATTTGAAACCACCTACTT
TCGATTTTAACTGTCGAAACAAACTGGAAAATCAGGCAAAATATTCTTTT
GGAAATTATGAGCTTATTGACTGCTGTAACTAACTTTTTATGTTTATTTA
GTGGAAAATGGTTTGTTTTATTGGTTGGAAATGTTATGTATTNTTTCCAA
AGTTGAGACAATTTTACCGGTTAATCAAAAAGATTTGGAGGCTTTGCTCA
GAACCATCACATAGTGTGAACCCCCCTTTTTTTAAGGGGGATTCGACTTT
TCCAAAAGTGCTTTATAGGGGGGGTCAAGTTTCAATGTTTTTGGTTTTGA
ATCAATAAAGTATAAGCCCGAAGGGCTAGAAGTCAATCTCTTTGGTAGGA
TTTGAAGCCAACAAATCCTACCAAAGTTGTGCGGCCTTGAGTGGCTTGCC
TGGTTTTTACACAAATGACAGATTGAAACTAAAATTTACCNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNATCTCTTTAATTATGTATTTTCAGATAGTGC
TGAACGACACTGCAGGACGTGAGCATTTCACCAGTATGACAATCGGAACA
TATTATCGTGGAGTACATGTTATTGTTTTCGTGTATGATGCCACAGATCA
AGAAAGTTTAAACTACATTGGCGGAGAACTAGAGGAGTTAAAAAATCGTA
GTGAATTCGAGAATGTTCAAATGATATTAATACGTAATAAATGTGATGAG
CCGCCTTCTCGTATAGCAGTCACTGAAGGCGATGAAGAGACTTTCGTTGC
GAATCGGAGTAATTTATTGGGTGACAGACTTAAATTAAGACGAAAGGTAT
CAGCGAAATGTGACCCTGAACCAATAAAGAAATTATTTTTCGAACATTTA
CATGACGTCATTAAAGGGAAAGGTACTACCCCTGATAATGAACAATTTAT
AAAACTTCGAGAGAAAAGATCTGCGAGTACCAAAAGTACGACGAATAGTT
CAGAGAAAGATGACAAGTGTCCTTGTTGTATTCAATGAGTTAATGATTTT
ATCAGTCCTACAGGAAATGTTTCGGAGACTTTAGACTCTCCAGAATAAGA
GTAAATAAGGCGTACAAACTTTCGCGAGTTTACAAAGTTTTGCGAGACCG
AAGAATCGCGGTATTTACGACATAAACTTTCGCGAATTCAACGAAAAAAT
ATTTTATAAAAATTGGCTTAGAAGGACAAATTATTCTTGAATTTGATTGA
AACTTTTTTTCTTTTGACATTTGAGGCTTCAACAGGCTAAAAAGTGCCAT
AAATCTTCTATTTTATTTAAAGTTAAAAGTTACACAGATTTTCTACTCAA
GAAATCTTCGCGAGCATAAATCGAATTACGTGAAAGTCGTGAAAATCGCG
AAAGTTCGCAAAGAATAAGGTGTAAAACGTAAAACACATTGGTATTACAC
AAAGACACTTGTGCATTTGATACATGGGCCCCGGTGACACCTTTAAAGTG
AGGGGGCAAATTATGGGAAAAAACCATGGTTGGACTTGGACGATGAATTT
TTGATTTTTTCTTTTGCTATTTACACCTTTTTTACAACATACAGGGTGTC
CGGAAAAAAAGTATCGAGTCGTACCACTTCTTTAAAAAGAAAGTTCTTGT
GTGTGTTGTTTTACTAAATTTGCAATGCTTATCAAAATTTCTCTCTGTGT
CATATTAATTGTCATGA

Coding sequence (CDS) from alignment at scaffold_276:704102..708618-

>TCONS_00056517 ID=TCONS_00056517|Name=TCONS_00056517|organism=Clytia hemisphaerica|type=CDS|length=2034bp|location=Sequence derived from alignment at scaffold_276:704102..708618- (Clytia hemisphaerica)
ATAGTGCTGAACGACACTGCAGGACGTGAGCATTTCACCAGTATGACAAT
CGGAACATATTATCGTGGAGTACATGTTATTGTTTTCGTGTATGATGCCA
CAGATCAAGAAAGTTTAAACTACATTGGCGGAGAACTAGAGGAGTTAAAA
AATCGTAGTGAATTCGAGAATGTTCAAATGATATTAATACGTAATAAATG
TGATGAGCCGCCTTCTCGTATAGCAGTCACTGAAGGCGATGAAGAGACTT
TCGTTGCGAATCGGAGTAATTTATTGGGTGACAGACTTAAATTAAGACGA
AAGGTATCAGCGAAATGTGACCCTGAACCAATAAAGAAATTATTTTTCGA
ACATTTACATGACGTCATTAAAGGGAAAGGTACTACCCCTGATAATGAAC
AATTTATAAAACTTCGAGAGAAAAGATCTGCGAGTACCAAAAGTACGACG
AATAGTTCAGAGAAAGATGACAAGTGTCCTTGTTGTATTCAATGAGGTAA
TGCCACGTATCAAAAGCAAGAGACCAAAGGAGGTATTTACAAAGTATGTT
TGGCTGGCCGAATGGAATCTGGCAAGACTACAATTTTTCAAATAATTTCT
GGAAATCCCATCAATGAAAACCCAAGTAATGACTTCTTTGAATATCAATA
TGATGGTCTGGGGAAGATGTCCTGGAAGATAGTGCTGAACGACACTGCAG
GACGTGAGCATTTCACCAGTATGACAATCGGAACATATTATCGTGGAGTA
CATGTTATTGTTTTCGTGTATGATGCCACAGATCAAGAAAGTTTAAACTA
CATTGGCGGAGAACTAGAGGAGTTAAAAAATCGTAGTGAATTCGAGAATG
TTCAAATGATATTAATACGTAATAAATGTGATGAGCCGCCTTCTCGTATA
GCAGTCACTGAAGGCGATGAAGAGACTTTCGTTGCGAATCGGAGTAATTT
ATTGGGTGACAGACTTAAATTAAGACGAAAGGTATCAGCGAAATGTGACC
CTGAACCAATAAAGAAATTATTTTTCGAACATTTACATGACGTCATTAAA
GGGAAAGGTACTACCCCTGATAATGAACAATTTATAAAACTTCGAGAGAA
AAGATCTGCGAGTACCAAAAGTACGACGAATAGTTCAGAGAAAGATGACA
AGTGTCCTTGTTGTATTCAATGAGGTAATGCCACGTATCAAAAGCAAGAG
ACCAAAGGAGGTATTTACAAAGTATGTTTGGCTGGCCGAATGGAATCTGG
CAAGACTACAATTTTTCAAATAATTTCTGGAAATCCCATCAATGAAAACC
CAAGTAATGACTTCTTTGAATATCAATATGATGGTCTGGGGAAGATGTCC
TGGAAGATAGTGCTGAACGACACTGCAGGACGTGAGCATTTCACCAGTAT
GACAATCGGAACATATTATCGTGGAGTACATGTTATTGTTTTCGTGTATG
ATGCCACAGATCAAGAAAGTTTAAACTACATTGGCGGAGAACTAGAGGAG
TTAAAAAATCGTAGTGAATTCGAGAATGTTCAAATGATATTAATACGTAA
TAAATGTGATGAGCCGCCTTCTCGTATAGCAGTCACTGAAGGCGATGAAG
AGACTTTCGTTGCGAATCGGAGTAATTTATTGGGTGACAGACTTAAATTA
AGACGAAAGGTATCAGCGAAATGTGACCCTGAACCAATAAAGAAATTATT
TTTCGAACATTTACATGACGTCATTAAAGGGAAAGGTACTACCCCTGATA
ATGAACAATTTATAAAACTTCGAGAGAAAAGATCTGCGAGTACCAAAAGT
ACGACGAATAGTTCAGAGAAAGATGACAAGTGTCCTTGTTGTATTCAATG
AGGTAATGCCACGTATCAAAAGCAAGAGACCAAAGGAGGTATTTACAAAG
TATGTTTGGCTGGCCGAATGGAATCTGGCAAGACTACAATTTTTCAAATA
ATTTCTGGAAATCCCATCAATGAAAACCCAAGTAATGACTTCTTTGAATA
TCAATATGATGGTCTGGGGAAGATGTCCTGGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035600XLOC_035600Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056517-proteinTCONS_00056517-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056517-exon-scaffold_276-1575043694:708490..708618TCONS_00056517-exon-scaffold_276-1575043694:708490..708618Clytia hemisphaericaexon
TCONS_00056517-exon-scaffold_276-1575043694:708004..708174TCONS_00056517-exon-scaffold_276-1575043694:708004..708174Clytia hemisphaericaexon
TCONS_00056517-exon-scaffold_276-1575043694:704102..705275TCONS_00056517-exon-scaffold_276-1575043694:704102..705275Clytia hemisphaericaexon
TCONS_00056517-exon-scaffold_276-1510915933:708490..708618TCONS_00056517-exon-scaffold_276-1510915933:708490..708618Clytia hemisphaericaexon
TCONS_00056517-exon-scaffold_276-1510915933:708004..708174TCONS_00056517-exon-scaffold_276-1510915933:708004..708174Clytia hemisphaericaexon
TCONS_00056517-exon-scaffold_276-1510915933:704102..705275TCONS_00056517-exon-scaffold_276-1510915933:704102..705275Clytia hemisphaericaexon
TCONS_00056517-exon-scaffold_276-1491911889:708490..708618TCONS_00056517-exon-scaffold_276-1491911889:708490..708618Clytia hemisphaericaexon
TCONS_00056517-exon-scaffold_276-1491911889:708004..708174TCONS_00056517-exon-scaffold_276-1491911889:708004..708174Clytia hemisphaericaexon
TCONS_00056517-exon-scaffold_276-1491911889:704102..705275TCONS_00056517-exon-scaffold_276-1491911889:704102..705275Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_276supercontigscaffold_276:704102..708618 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.29187	6.94663	3.77881	3.88338	30.8986	20.7104	27.9061	27.78	18.2451	18.7639	12.3317	11.0375	12.2732	9.66592	11.1785	11.842	15.3271	13.4634	9.21226	14.2236	10.6444	11.2688	11.0762	12.5098	13.1248	16.1415	19.4926	14.8099	12.358	11.3223
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001806Small_GTPase
IPR005225Small_GTP-bd_dom
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056517 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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