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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056518 ID=TCONS_00056518|Name=TCONS_00056518|organism=Clytia hemisphaerica|type=transcript|length=1576bp
ATGTTGAGTCAGCACTTTGAGCAGTTATGACATGACTATAACCGTGTTTG
TTCTGTAATTCTGCCTACTTCATAACCAAATATTATTCCAACAATACACG
GTCACATCCATAAAAAGTATGATGTAAAGTATGGCAAAGACTTCATCACG
TCCTAACAGTACTTATGATGACGGTGAAGTTATTGGATTGCCAGTGAAGT
TTGGCAGCGGTAGATGGAAAAATACTAAACAAGTGTCAGGAACAAGATTC
AAAATATGTTTATGTGGAAAAAGCAAAGTTGGAAAGACATCAATCTTTAT
GAGACTTCAGGGATTGGATTTTGCAGAAGATGATCCAAACTGTcccattt
caaattttgaattcaaagatGAGAATGATAGTACAGTAGAGTATTCTATA
TCAGATCCGGAATCTATAGACATAGACTCGCTGACATTTGGGGACCATTA
CCGAAATGCACACTGTGTTGTATTAATATATGATGTCACTGACTTTAGTT
CTTTGGATTATTTGAGCTATGAAAtagagaaaattgaaaaaaataactat
aCTCCATATGCTAAATATGTTTTATTGCGAAATAAAATTGAtaagaaatc
atcaaaacatattCCTTTAGCtaagcaaaaagaattttttgcaaACAGTA
AATTGCGCTTAAAGATTGATCATGTAGTTGAAACCTCTGCAAAAACAAAT
GAAGGCATATTAGAATTCTTCAAAGAAGAACTGCCAGAATTACTAGTACT
CCCgtcatcagaaagcaaagttaaGGCCTTTGATCGCCTTGTTAGTGATT
CCCAACAAGGGCTAGATGCAACTGACTCTTCCCCTGGTGgcagaaaaaag
aagaagaagaaaaggatcaaTTGTGCAACATCATAAGAATTTCATAAAGA
TTTACTTCAGAAAAAGCTTCCAGAATTTTGTTTACAGAAGCAGGGTTTTG
CTTTGTGTTTTGCATGGATGGCAAATGACAAGGTAAACTCTGGGAGAGTT
AAAGAATAATGCAGTAGTATTTTTagtttgttttatatttttgctttttg
aaagcACAGGATAATAAGTTATGTTTTAACTCTTTAATATTATTAGCTCT
ATAAGACAGGCTATTTGATGAGAGCACTCTACAAAATGAAAGTGTCTGTT
ACTTATTGGTATTGAATTTTATTGACTTTCCATAGCTTGTGAATGTGATG
ACTCAGTTAAAATTTTAGTTATAATATCCTTTTAAGAGTTATCTATCTTT
ATTATTTATGAAATTCACATacagtatttttgtttatttataatCATTTA
TATTACGTGTCATGCAGTGCTCTACCTTATTTTTAACAGAACAGTAATCT
CTTGAGAGgaattgataaaaataaaaattttcactttgtttTAGTCAATC
TTTGATTTACTTAATTAGTTATACATCATTTGATGATGATTTTGTGTTAT
TGCGTTCTAGTTGCCGCTCTGAAATTAGGAAATTTATAatcatattttta
tttgattttcttaattaaactttagttttaaaaaagaacttttgtatttt
gaagCTATATTTTACTTGAAATAGTT Run BLAST on NCBI transcript from alignment at scaffold_276:709556..714415- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056518 ID=TCONS_00056518|Name=TCONS_00056518|organism=Clytia hemisphaerica|type=transcript|length=4860bp|location=Sequence derived from alignment at scaffold_276:709556..714415- (Clytia hemisphaerica)
ATGTTGAGTCAGCACTTTGAGCAGTTATGACATGACTATAACCGTGTTTG
TTCTGTAATTCTGCCTACTTCATAACCAAATATTATTCCAACAATACACG
GTCACATCCATAAAAAGTATGATGTAAAGGTATAAACACATTTCTTGTTT
CTTGCATTTTGATTTTAGTATAGTAAGATAGTCTATCGGTGTTGTCAACA
GTCTGTCCCTGTGACAAGGTACCCTGTGACAAACAAAAACAAGAACCTGA
CACCTGAAATAGCTAAATACAACCTGATGGTTTGGGGGAGAATGATGGTC
ATGGAGAAGGGTTTGATTGTAGACTTCTCCTTACCTCTCCTTCTCCTAGC
TTTTGATGTGGTGATAAACAGGGTTTTGAAGATTTCTGATTATAATTTTC
CATAGAGGGGCTTTTTCATACATTTTTCTAGAATTACACAATCATTGAAG
GATTCAGGGGTCATGTCATTATCTGAAATCCAGGAGACAGTCTTTTCGAA
GAACGCCACGCTCTTTTGAATAACTGACAATTCCAGCATACATTTTTATA
GTATGATAATGTCATATAATAATTGATTTGTCTTTTACAACACAGCTGTT
ACCAGTTACCGTCAACTGCTCTAACTTGGGACTATCTGACAAACAGCAAT
TCAGCCACCATTTCACCAAACCTCCAAAGTCAGAAAGTCCTTTGATTTGA
GTTAATGAAGGACGTATTAAAAAATACACGATTTCTCTTTCGCACCGAGT
AGGCTTTAAATCGAAATATGAAAAAAATCTCATAGTGGAACACATGCAAA
TGTCTGGAAAAAAGAAGACCAAGTTAGTGGCAAAACAATCAGTCAGGCAC
ATCCTGGCAAATGAACGGGGTGAGCATTTGCATGGGGTATTCGTCACCCA
GTGTAAATGAGATAGGACGTCTCAGGCTAAAAGCNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATC
TATGCAATTCTTTGAAATGAAGCAAAATATTTCCAACCCGGTTCAATTAA
ACTGGGTATTCGGCGCTATTACGTCACTTTCGTTTTCGACCCCGTTCATT
TTGCCAATGGTCGCAAGTGAAAAATACCCCGTTCATTTGCCAGGATGTGC
CTGACTGACAATGGAGCGTTTGACGTCACTCGCGTGGCAAGTTAAACACT
GATATTTGTTAATCCCATCAGGCGATAGGCGGTTAGGCAGTGGGCATTCT
CTTATTCTCTTATCAGCGTCTGGTCATTTTGAATAAAAAAAAAAAGTTAA
AAAGGGCGCGCTATCCATCAGTGAAAGTTATCGTGACATGTTATGACAGA
AAGTATGATTGATTAACTTGGTGGAGGTAGCAAAACAAACTTGTTGTCAA
AGAGATTTAACAGTAAGTGAAAATACAGACCAGAATATCAACAGTCCCTT
GTTTTGACCAATCGCCCCAAGTTAGAGCAGTTGACGGTACCTAGAGACAA
GATGATTTAGAGTAATTTGTTATTCAGACTATCGCGTTCTCCTAAACAAC
TATTGCATTCATCAGAGGGACAAAAAGATTATAATAGTTGCTTGGGAGAC
CACAACGGTCTATTGCATAACTTATTACTCCACACTTCAGTGGATACAAT
GGGATAAGTAAAGGAAGCGAGAAATTAGATATGACCTATGAATAAGTTTT
GTTCAAATTGGCATGTTAACATTCTCCCGAATTTGCATGCGATATCACTG
CGAATCTTCTCGTGCTGCGTCCTATAAAGTATTAGCTGAGGTAGTAGGGT
TATATTTCCATAAATTGGAGCAGATAATTTCCGGTCCAAAGTGTTTGAGT
AATTAATATGGGGAACTGAGTCAATAGGTCGTTGCGTTCTCCTAAACGAC
TATAAAAAGAATAGCAGATTTGACCATTATTTTATTGCCTTTTCGTGATT
TATGCAATAGACCTTTCCTGTAATTCCTTAAAAACAAGTACTATATTTCT
TTCCTTGAGTTATCATGATTTGAAACCATTTGAAAAATACCTCTCTAGTT
TAGTATGGCAAAGACTTCATCACGTCCTAACAGTACTTATGATGACGGTG
AAGTTATTGGATTGCCAGTGAAGTTTGGCAGCGGTAGATGGAAAAATACT
AAACAAGTGTCAGGAACAAGATTCAAAATATGTTTATGTGGAAAAAGCAA
AGTTGGAAAGACATCAATCTTTATGAGACTTCAGGGATTGGATTTTGCAG
AAGATGATCCAAACTGTCCCATTTCAAATTTTGAATTCAAAGATGAGAAT
GATAGTACAGTAGAGGTAAGATTTTGGAAATGACCAGAGAAAAAGTATAT
AACATTGAACCCAGTAGACTTGAACTACAAAGCGCTTATTTCTTTTTTAA
TTGTTGGGAAAATATTCTTATTAGAACATAATCTCGTATCTTATGTCAAT
ATTTCTTGTAGCCTCTTATTCACAAATCAAGCTTTTTCATTATTGTATCT
TTCCATTTCAGTATTCTATATCAGATCCGGAATCTATAGACATAGACTCG
CTGACATTTGGGGACCATTACCGAAATGCACACTGTGTTGTATTAATATA
TGATGTCACTGACTTTAGTTCTTTGGATTATTTGAGCTATGAAATAGAGA
AAATTGAAAAAAATAACTATACTCCATATGCTAAATATGTTTTATTGCGA
AATAAAATTGATAAGAAATCATCAAAACATATTCCTTTAGCTAAGCAAAA
AGAATTTTTTGCAAACAGTAAATTGCGCTTAAAGATTGATCATGTAGTTG
AAACCTCTGCAAAAACAAATGAAGGCATATTAGAATTCTTCAAAGAAGAA
CTGCCAGAATTACTAGTACTCCCGTCATCAGAAAGCAAAGTTAAGGCCTT
TGATCGCCTTGTTAGTGATTCCCAACAAGGGCTAGATGCAACTGACTCTT
CCCCTGGTGGCAGAAAAAAGAAGAAGAAGAAAAGGATCAATTGTGCAACA
TCATAAGAATTTCATAAAGATTTACTTCAGAAAAAGCTTCCAGAATTTTG
TTTACAGAAGCAGGCGTTTTGCTTTGTGTTTTGCATGGATGGCAAATGAC
AAGGTAAACTCTGGGAGATTTAAAGAATAATGCAGTAGTATTTTTAGTTT
GTTTTATATTTTTGCTTTTTGAAAGCACAGGATAATAAGTTATGTTTTAA
CTCTTTAATATTATTAGCTCTATAAGACAGGCTATTTGATGAGAGCACTC
TACAAAATGACTTTATTGACTTTCCATAGCTTGTGAATGTGATGACNCCA
GAGAAAAAGTATATAACATTGAACCCAGTAGACTTGAACTACAAAGCGCT
TATTTCTTTTTTAATTGTTGGGAAAATATTCTTATTAGAACATAATCTCG
TATCTTATGTCAATATTTCTTGTAGCCTCTTATTCACAAATCAAGCTTTT
TCATTATTGTATCTTTCCATTTCAGTATTCTATATCAGATCCGGAATCTA
TAGACATAGACTCGCTGACATTTGGGGACCATTACCGAAATGCACACTGT
GTTGTATTAATATATGATGTCACTGACTTTAGTTCTTTGGATTATTTGAG
CTATGAAATAGAGAAAATTGAAAAAAATAACTATACTCCATATGCTAAAT
ATGTTTTATTGCGAAATAAAATTGATAAGAAATCATCAAAACATATTCCT
TTAGCTAAGCAAAAAGAATTTTTTGCAAACAGTAAATTGCGCTTAAAGAT
TGATCATGTAGTTGAAACCTCTGCAAAAACAAATGAAGGCATATTAGAAT
TCTTCAAAGAAGAACTGCCAGAATTACTAGTACTCCCGTCATCAGAAAGC
AAAGTTAAGGCCTTTGATCGCCTTGTTAGTGATTCCCAACAAGGGCTAGA
TGCAACTGACTCTTCCCCTGGTGGCAGAAAAAAGAAGAAGAAGAAAAGGA
TCAATTGTGCAACATCATAAGAATTTCATAAAGATTTACTTCAGAAAAAG
CTTCCAGAATTTTGTTTACAGAAGCAGGGTTTTGCTTTGTGTTTTGCATG
GATGGCAAATGACAAGGTAAACTCTGGGAGAGTTAAAGAATAATGCAGTA
GTATTTTTAGTTTGTTTTATATTTTTGCTTTTTGAAAGCACAGGATAATA
AGTTATGTTTTAACTCTTTAATATTATTAGCTCTATAAGACAGGCTATTT
GATGAGAGCACTCTACAAAATGAAAGTGTCTGTTACTTATTGGTATTGAA
TTTTATTGACTTTCCATAGCTTGTGAATGTGATGACTCAGTTAAAATTTT
AGTTATAATATCCTTTTAAGAGTTATCTATCTTTATTATTTATGAAATTC
ACATACAGTATTTTTGTTTATTTATAATCATTTATATTACGTGTCATGCA
GTGCTCTACCTTATTTTTAACAGAACAGTAATCTCTTGAGAGGAATTGAT
AAAAATAAAAATTTTCACTTTGTTTTAGTCAATCTTTGATTTACTTAATT
AGTTATACATCATTTGATGATGATTTTGTGTTATTGCGTTCTAGTTGCCG
CTCTGAAATTAGGAAATTTATAATCATATTTTTATTTGATTTTCTTAATT
AAACTTTAGTTTTAAAAAAGAACTTTTGTATTTTGAAGCTATATTTTACT
TGAAATAGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056518-exon-scaffold_276-1575043694:714287..714415 | TCONS_00056518-exon-scaffold_276-1575043694:714287..714415 | Clytia hemisphaerica | exon |
| TCONS_00056518-exon-scaffold_276-1575043694:711901..712162 | TCONS_00056518-exon-scaffold_276-1575043694:711901..712162 | Clytia hemisphaerica | exon |
| TCONS_00056518-exon-scaffold_276-1575043694:709556..710740 | TCONS_00056518-exon-scaffold_276-1575043694:709556..710740 | Clytia hemisphaerica | exon |
| TCONS_00056518-exon-scaffold_276-1510915933:714287..714415 | TCONS_00056518-exon-scaffold_276-1510915933:714287..714415 | Clytia hemisphaerica | exon |
| TCONS_00056518-exon-scaffold_276-1510915933:711901..712162 | TCONS_00056518-exon-scaffold_276-1510915933:711901..712162 | Clytia hemisphaerica | exon |
| TCONS_00056518-exon-scaffold_276-1510915933:709556..710740 | TCONS_00056518-exon-scaffold_276-1510915933:709556..710740 | Clytia hemisphaerica | exon |
| TCONS_00056518-exon-scaffold_276-1491911889:714287..714415 | TCONS_00056518-exon-scaffold_276-1491911889:714287..714415 | Clytia hemisphaerica | exon |
| TCONS_00056518-exon-scaffold_276-1491911889:711901..712162 | TCONS_00056518-exon-scaffold_276-1491911889:711901..712162 | Clytia hemisphaerica | exon |
| TCONS_00056518-exon-scaffold_276-1491911889:709556..710740 | TCONS_00056518-exon-scaffold_276-1491911889:709556..710740 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_276 | supercontig | scaffold_276:709556..714415 - |
Blast
The following BLAST results are available for this feature:
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