TCONS_00056529 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056529
Unique NameTCONS_00056529
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length810

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056529 ID=TCONS_00056529|Name=TCONS_00056529|organism=Clytia hemisphaerica|type=transcript|length=810bp
ccccccccccggctattaggtacccgagagtaactaAGGTAAAGAAATCC
GAATACGTCGATTTCGATGATTTACTTCCTCCATCACCATCAATCAAAAG
TAGCACAGAATTACTCGGTTTCCAACTCGATGCAGACAACAACCTTTTAC
TCAAACCTAACCAAACTTTGGCAAGAATACGTGACTATCCATCATGGATC
TGTGTATGGAACCTCTTATACCAAGGCTACTTACACTATTATCCCGACAA
ACATTAGGAATATTTTTcgtatttcaaaataattacaAATCTGGCAAGAA
AACAtcgttttgaaaacatttattTATACGACAAGTCTCAGCGTCAAACA
CTTGCTGCCCAACACTCCCTACCTGAACAACTACGAACAACCGACTGGAA
AACATTTAATGACGAATTATTCAATATTTTCCTTCGAGATTCGCACTTAC
CCTCTTGCTATCATTGTTTAACCTACGGTCATGATGCTTAACAGCTTGCC
CCTTTAAACCAAACGCTCGTACACCAAACAAATATGCCAACCCCTACACC
TGGACACAAGATTGTTTAacgtttttaatcatttttatagattttaaaGA
TACTAATGAAGGCAATTGGAAATTTTAGTTTTGCCTAGGTTGTGCGCATC
CCTAATGTTTAGAAATATGTTTTATTGTTTAAcgtttttaatcattttat
agattttatAGATACTAATGAAAGCAATTAGACTTTCCTTTTTTCAACTA
TTTGGCCTCGAAGTCTATTGTAACAGACATGACCGACATAATTCTCGACA
Caccagaaat
Run BLAST on NCBI

transcript from alignment at scaffold_276:79415..80224

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056529 ID=TCONS_00056529|Name=TCONS_00056529|organism=Clytia hemisphaerica|type=transcript|length=810bp|location=Sequence derived from alignment at scaffold_276:79415..80224 (Clytia hemisphaerica)
atttctggtGTGTCGAGAATTATGTCGGTCATGTCTGTTACAATAGACTT
CGAGGCCAAATAGTTGAAAAAAGGAAAGTCTAATTGCTTTCATTAGTATC
TataaaatctataaaatgattaaaaacgTTAAACAATAAAACATATTTCT
AAACATTAGGGATGCGCACAACCTAGGCAAAACTAAAATTTCCAATTGCC
TTCATTAGTATCtttaaaatctataaaaatgattaaaaacgtTAAACAAT
CTTGTGTCCAGGTGTAGGGGTTGGCATATTTGTTTGGTGTACGAGCGTTT
GGTTTAAAGGGGCAAGCTGTTAAGCATCATGACCGTAGGTTAAACAATGA
TAGCAAGAGGGTAAGTGCGAATCTCGAAGGAAAATATTGAATAATTCGTC
ATTAAATGTTTTCCAGTCGGTTGTTCGTAGTTGTTCAGGTAGGGAGTGTT
GGGCAGCAAGTGTTTGACGCTGAGACTTGTCGTATAaataaatgttttca
aaacgaTGTTTTCTTGCCAGATTtgtaattattttgaaatacgAAAAATA
TTCCTAATGTTTGTCGGGATAATAGTGTAAGTAGCCTTGGTATAAGAGGT
TCCATACACAGATCCATGATGGATAGTCACGTATTCTTGCCAAAGTTTGG
TTAGGTTTGAGTAAAAGGTTGTTGTCTGCATCGAGTTGGAAACCGAGTAA
TTCTGTGCTACTTTTGATTGATGGTGATGGAGGAAGTAAATCATCGAAAT
CGACGTATTCGGATTTCTTTACCTtagttactctcgggtacctaatagcc
gggggggggg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035609XLOC_035609Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056529-exon-scaffold_276-1491911889:79415..80224TCONS_00056529-exon-scaffold_276-1491911889:79415..80224Clytia hemisphaericaexon
TCONS_00056529-exon-scaffold_276-1510915933:79415..80224TCONS_00056529-exon-scaffold_276-1510915933:79415..80224Clytia hemisphaericaexon
TCONS_00056529-exon-scaffold_276-1575043694:79415..80224TCONS_00056529-exon-scaffold_276-1575043694:79415..80224Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_276supercontigscaffold_276:79415..80224 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.118062	0	0	0	0	0	0	0.370652	0.198978	0.123233	0	0	0.0392984	0	0.201119	0.0369685	0.185142	0.181684	0	0	0	0	0	0	0.316896	0.339911	0.16826	0.0895153	0	0.068491
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056529 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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