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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056540 ID=TCONS_00056540|Name=TCONS_00056540|organism=Clytia hemisphaerica|type=transcript|length=2747bp
TTtagtgataaaaaaatttcaagagaAGGTATTCAAGTCAAAAGTTAAGA
TGGTGAATTATTTATTGTTGAGACTGGCAAGTGGGAAATATTGTACATTA
TTTTATTGGTGCGAAGTGAAAGATTCACTggaaaatctcaagaaaagagT
TGAGCTTCGATTTCACATTCCATCAGATTGTCAAAATATCACCAAGAATG
GTCTAATGTTGGATGAGGAGACTTTTAAAACATTATATGTTGAGCGTTTT
CATCAAGTTGTTGAATTGGATGTTCAAATTACAGATAGTTTTGATGGCGA
TATAGACATTGTTAAGGCTCGTAGAAAAGTTGCATGTCATTTGTTGGAGA
CCATAATAATTCTTAACATAAGGAGAAAGTATTGTTATACATATAATGGT
GATTTAATAGTcgattttaaaaaagatttaggTATTGACTCAACTGTGTT
TCATTTGAATCAATTATGTGCAAAAATCAGTGGTGAGATGTCATATTTTC
TTTATGAACACGTTGTTTTGAGTGATGACCAATTACTAGTGGATATATTC
CTAGATGTGGTTACAGGTgatacaaaaaatctgaaatttcgaTACGTTAA
GAAAAGCAAATTAGAAAATGACAAAGATTTTGGTAATAATGACCAACGTT
TTTTGGCCCATGGAAACTTTGTACCTCCAAGAATACGCATTTTCTTCCCT
ATGATAGAGGCATGCCTTGCCCATGAAGTGAACACCTGTTTTCCTAATGA
TATCACCAGGTCTGATATTGAAATAGGAAGAGATTTGATAAATGGCAAGG
GAAACATTGTTGCTAAATCAGAACTTGGCAAGTCACCTTTCAAATTGACA
ATCGTTTCCCCGAAACCTGAACCCAATGAAATTGTGAACCATCCTGGATT
GATGCGGGAATTTTTGGACATTGGTTTCACGAAATTATCATACCCTTTCT
TAGACGTCGGTTCACTCTACGTAGATGATTTGAAAAGCTGGATTTGTCAC
ATATTTGGAATCCCATGCCATGAGCAAGTTGTACTACATGTTTACGAAAA
GGACATTGGAACTGTTGATGAACTTTTGATCAATTCATGGGGCCCAATAC
CATGTTTATATTGGTTTGCAGTCTTCATTAATACAACCAATCATAAAGCT
TTCAAACCCTTTAATTACCCAGATAAAAACCATATCAAAATGCAGAAAGT
GCAATCTTTTCCAATTATtataaaatctgaaaacaaaaacatgaattttc
attttgaaagttggatcaagaaaaatgaaaaaattgaagaagtgATTGAA
CAAAAACTCGACATACCGAAAAATCGACTCTATATCAACCATAATTATCA
ACATGAAGATTTTGTTGCAGAACAAACAAAAAGGGTGTGGCGGGAAAATT
TACATGCACTCAAAACGGAATGGCGCAAAATCAatctatataataaaaac
ataaatTCTGACTATTTCTCTGACACTCCACCTAGTTCTCAAACTCCTCT
TAAATACAATATAGCTGTATTTGTGGAAGACACCGAGTCAGAATTACTAG
AGAACCTCCAGAAAAATGGAGTCCGACCAAAACCTATCATGCAATCAGTT
TTAATTAAATATGGAGGAAAAACCTTTTGTGAATTTTCCTTTTCAGTTTT
GAATATGTTTGCTTGTCCAGGAGATCAACAATATCAAACTATATGCCAGT
CTATCAGGAGACAATTTTCAGACATCACACCTGAAGTTATATCATTAAAA
CCTGAAGGCGACGAAGCTAATGATCAATCAAAAGATTCTgtatttaattt
gtttttaaatcctTTAAGATTCCAAGGAGATGTTGACACCTTCTGTCAGA
AATATGGTcttgcaaaaaaaatgaaggtcaacTTTTTGACGGGACagttt
tcagttgatttattttcAGAAGAGGGTCGCAAATTGGAGGATATTCATGA
TCTTAAGACTTATGTTTACGAAAAGAAAGGAATCCCACCTCATTTACAAT
CATACTTTCACAATCGAATCGAATTATCTTATGGTGCACGTCTCTttgaa
tttttgtcattgggGACTAAGTGCACGTTGAATTTAGTTGTACTTCCAGC
TAAAGACATTGACATCAAATGTACTTTAGGAAAAGAAGAATTCTCATTgc
aaataaaagaaacatgtaaaaTGTTGGATTTAAAAAAGAAGGTAGGAGAA
CAGTGTGGCTTAAGTATGGAATTGTTCAGGATCCAATTAAACTGTAGTAG
AGATTACGACGATCTAACACCTATCTGGGAGCTGGGACATGATAATATGA
TCATCCGAAGAGCAGTGTATTTTACCATCCATCAAACTGATGGTAAAGTT
TTGGTTGAAAAAGACAgacatttcttttttgatgaGGGAAAAGATACTAT
TGAATCATTACAGAAAGAAATACAAGAGCAATATTTCAGGAATGAAAGTA
AAGGAGGAATTCTATTGAAAAATCGAGAATTCGATTCGGATACGAAATTG
ATAGACATTGGGGAGATAATCATTACATTTGTTGTTTACTCTGAACCAGT
CAATGTTTGCAATATATGTTGATTTATAAGTACTGTTACTTTCATAGGGA
GACATATAATTTTTAGGTGTTTCCAAAgactttttttattaatttccaCC
TTTTCCAGTAAGTAAGTATTCAATATAATTATCAGAAAATAAGATATATT
TTTACCGAAATTATCATATATGGAATTTCACGAATGAGGAGTTTTTA Run BLAST on NCBI protein sequence of TCONS_00056540-protein >TCONS_00056540-protein ID=TCONS_00056540-protein|Name=TCONS_00056540-protein|organism=Clytia hemisphaerica|type=polypeptide|length=856bp
LVIKKFQEKVFKSKVKMVNYLLLRLASGKYCTLFYWCEVKDSLENLKKRV
ELRFHIPSDCQNITKNGLMLDEETFKTLYVERFHQVVELDVQITDSFDGD
IDIVKARRKVACHLLETIIILNIRRKYCYTYNGDLIVDFKKDLGIDSTVF
HLNQLCAKISGEMSYFLYEHVVLSDDQLLVDIFLDVVTGDTKNLKFRYVK
KSKLENDKDFGNNDQRFLAHGNFVPPRIRIFFPMIEACLAHEVNTCFPND
ITRSDIEIGRDLINGKGNIVAKSELGKSPFKLTIVSPKPEPNEIVNHPGL
MREFLDIGFTKLSYPFLDVGSLYVDDLKSWICHIFGIPCHEQVVLHVYEK
DIGTVDELLINSWGPIPCLYWFAVFINTTNHKAFKPFNYPDKNHIKMQKV
QSFPIIIKSENKNMNFHFESWIKKNEKIEEVIEQKLDIPKNRLYINHNYQ
HEDFVAEQTKRVWRENLHALKTEWRKINLYNKNINSDYFSDTPPSSQTPL
KYNIAVFVEDTESELLENLQKNGVRPKPIMQSVLIKYGGKTFCEFSFSVL
NMFACPGDQQYQTICQSIRRQFSDITPEVISLKPEGDEANDQSKDSVFNL
FLNPLRFQGDVDTFCQKYGLAKKMKVNFLTGQFSVDLFSEEGRKLEDIHD
LKTYVYEKKGIPPHLQSYFHNRIELSYGARLFEFLSLGTKCTLNLVVLPA
KDIDIKCTLGKEEFSLQIKETCKMLDLKKKVGEQCGLSMELFRIQLNCSR
DYDDLTPIWELGHDNMIIRRAVYFTIHQTDGKVLVEKDRHFFFDEGKDTI
ESLQKEIQEQYFRNESKGGILLKNREFDSDTKLIDIGEIIITFVVYSEPV
NVCNIC Run BLAST on NCBI transcript from alignment at scaffold_276:340891..343637 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056540 ID=TCONS_00056540|Name=TCONS_00056540|organism=Clytia hemisphaerica|type=transcript|length=2747bp|location=Sequence derived from alignment at scaffold_276:340891..343637 (Clytia hemisphaerica)
TAAAAACTCCTCATTCGTGAAATTCCATATATGATAATTTCGGTAAAAAT
ATATCTTATTTTCTGATAATTATATTGAATACTTACTTACTGGAAAAGGt
ggaaattaataaaaaaagtcTTTGGAAACACCTAAAAATTATATGTCTCC
CTATGAAAGTAACAGTACTTATAAATCAACATATATTGCAAACATTGACT
GGTTCAGAGTAAACAACAAATGTAATGATTATCTCCCCAATGTCTATCAA
TTTCGTATCCGAATCGAATTCTCGATTTTTCAATAGAATTCCTCCTTTAC
TTTCATTCCTGAAATATTGCTCTTGTATTTCTTTCTGTAATGATTCAATA
GTATCTTTTCCCtcatcaaaaaagaaatgtcTGTCTTTTTCAACCAAAAC
TTTACCATCAGTTTGATGGATGGTAAAATACACTGCTCTTCGGATGATCA
TATTATCATGTCCCAGCTCCCAGATAGGTGTTAGATCGTCGTAATCTCTA
CTACAGTTTAATTGGATCCTGAACAATTCCATACTTAAGCCACACTGTTC
TCCTACCTTCTTTTTTAAATCCAACAttttacatgtttcttttatttgcA
ATGAGAATTCTTCTTTTCCTAAAGTACATTTGATGTCAATGTCTTTAGCT
GGAAGTACAACTAAATTCAACGTGCACTTAGTCcccaatgacaaaaattc
aaAGAGACGTGCACCATAAGATAATTCGATTCGATTGTGAAAGTATGATT
GTAAATGAGGTGGGATTCCTTTCTTTTCGTAAACATAAGTCTTAAGATCA
TGAATATCCTCCAATTTGCGACCCTCTTCTgaaaataaatcaactgaaaa
ctGTCCCGTCAAAAAgttgaccttcattttttttgcaagACCATATTTCT
GACAGAAGGTGTCAACATCTCCTTGGAATCTTAAaggatttaaaaacaaa
ttaaatacAGAATCTTTTGATTGATCATTAGCTTCGTCGCCTTCAGGTTT
TAATGATATAACTTCAGGTGTGATGTCTGAAAATTGTCTCCTGATAGACT
GGCATATAGTTTGATATTGTTGATCTCCTGGACAAGCAAACATATTCAAA
ACTGAAAAGGAAAATTCACAAAAGGTTTTTCCTCCATATTTAATTAAAAC
TGATTGCATGATAGGTTTTGGTCGGACTCCATTTTTCTGGAGGTTCTCTA
GTAATTCTGACTCGGTGTCTTCCACAAATACAGCTATATTGTATTTAAGA
GGAGTTTGAGAACTAGGTGGAGTGTCAGAGAAATAGTCAGAatttatgtt
tttattatatagatTGATTTTGCGCCATTCCGTTTTGAGTGCATGTAAAT
TTTCCCGCCACACCCTTTTTGTTTGTTCTGCAACAAAATCTTCATGTTGA
TAATTATGGTTGATATAGAGTCGATTTTTCGGTATGTCGAGTTTTTGTTC
AATcacttcttcaattttttcatttttcttgatccaactttcaaaatgaa
aattcatgtttttgttttcagattttataATAATTGGAAAAGATTGCACT
TTCTGCATTTTGATATGGTTTTTATCTGGGTAATTAAAGGGTTTGAAAGC
TTTATGATTGGTTGTATTAATGAAGACTGCAAACCAATATAAACATGGTA
TTGGGCCCCATGAATTGATCAAAAGTTCATCAACAGTTCCAATGTCCTTT
TCGTAAACATGTAGTACAACTTGCTCATGGCATGGGATTCCAAATATGTG
ACAAATCCAGCTTTTCAAATCATCTACGTAGAGTGAACCGACGTCTAAGA
AAGGGTATGATAATTTCGTGAAACCAATGTCCAAAAATTCCCGCATCAAT
CCAGGATGGTTCACAATTTCATTGGGTTCAGGTTTCGGGGAAACGATTGT
CAATTTGAAAGGTGACTTGCCAAGTTCTGATTTAGCAACAATGTTTCCCT
TGCCATTTATCAAATCTCTTCCTATTTCAATATCAGACCTGGTGATATCA
TTAGGAAAACAGGTGTTCACTTCATGGGCAAGGCATGCCTCTATCATAGG
GAAGAAAATGCGTATTCTTGGAGGTACAAAGTTTCCATGGGCCAAAAAAC
GTTGGTCATTATTACCAAAATCTTTGTCATTTTCTAATTTGCTTTTCTTA
ACGTAtcgaaatttcagattttttgtatcACCTGTAACCACATCTAGGAA
TATATCCACTAGTAATTGGTCATCACTCAAAACAACGTGTTCATAAAGAA
AATATGACATCTCACCACTGATTTTTGCACATAATTGATTCAAATGAAAC
ACAGTTGAGTCAATAcctaaatcttttttaaaatcgACTATTAAATCACC
ATTATATGTATAACAATACTTTCTCCTTATGTTAAGAATTATTATGGTCT
CCAACAAATGACATGCAACTTTTCTACGAGCCTTAACAATGTCTATATCG
CCATCAAAACTATCTGTAATTTGAACATCCAATTCAACAACTTGATGAAA
ACGCTCAACATATAATGTTTTAAAAGTCTCCTCATCCAACATTAGACCAT
TCTTGGTGATATTTTGACAATCTGATGGAATGTGAAATCGAAGCTCAAct
cttttcttgagattttccAGTGAATCTTTCACTTCGCACCAATAAAATAA
TGTACAATATTTCCCACTTGCCAGTCTCAACAATAAATAATTCACCATCT
TAACTTTTGACTTGAATACCTtctcttgaaatttttttatcactaAA Coding sequence (CDS) from alignment at scaffold_276:340891..343637 >TCONS_00056540 ID=TCONS_00056540|Name=TCONS_00056540|organism=Clytia hemisphaerica|type=CDS|length=2571bp|location=Sequence derived from alignment at scaffold_276:340891..343637 (Clytia hemisphaerica)
TCAACATATATTGCAAACATTGACTGGTTCAGAGTAAACAACAAATGTAA
TGATTATCTCCCCAATGTCTATCAATTTCGTATCCGAATCGAATTCTCGA
TTTTTCAATAGAATTCCTCCTTTACTTTCATTCCTGAAATATTGCTCTTG
TATTTCTTTCTGTAATGATTCAATAGTATCTTTTCCCtcatcaaaaaaga
aatgtcTGTCTTTTTCAACCAAAACTTTACCATCAGTTTGATGGATGGTA
AAATACACTGCTCTTCGGATGATCATATTATCATGTCCCAGCTCCCAGAT
AGGTGTTAGATCGTCGTAATCTCTACTACAGTTTAATTGGATCCTGAACA
ATTCCATACTTAAGCCACACTGTTCTCCTACCTTCTTTTTTAAATCCAAC
AttttacatgtttcttttatttgcAATGAGAATTCTTCTTTTCCTAAAGT
ACATTTGATGTCAATGTCTTTAGCTGGAAGTACAACTAAATTCAACGTGC
ACTTAGTCcccaatgacaaaaattcaaAGAGACGTGCACCATAAGATAAT
TCGATTCGATTGTGAAAGTATGATTGTAAATGAGGTGGGATTCCTTTCTT
TTCGTAAACATAAGTCTTAAGATCATGAATATCCTCCAATTTGCGACCCT
CTTCTgaaaataaatcaactgaaaactGTCCCGTCAAAAAgttgaccttc
attttttttgcaagACCATATTTCTGACAGAAGGTGTCAACATCTCCTTG
GAATCTTAAaggatttaaaaacaaattaaatacAGAATCTTTTGATTGAT
CATTAGCTTCGTCGCCTTCAGGTTTTAATGATATAACTTCAGGTGTGATG
TCTGAAAATTGTCTCCTGATAGACTGGCATATAGTTTGATATTGTTGATC
TCCTGGACAAGCAAACATATTCAAAACTGAAAAGGAAAATTCACAAAAGG
TTTTTCCTCCATATTTAATTAAAACTGATTGCATGATAGGTTTTGGTCGG
ACTCCATTTTTCTGGAGGTTCTCTAGTAATTCTGACTCGGTGTCTTCCAC
AAATACAGCTATATTGTATTTAAGAGGAGTTTGAGAACTAGGTGGAGTGT
CAGAGAAATAGTCAGAatttatgtttttattatatagatTGATTTTGCGC
CATTCCGTTTTGAGTGCATGTAAATTTTCCCGCCACACCCTTTTTGTTTG
TTCTGCAACAAAATCTTCATGTTGATAATTATGGTTGATATAGAGTCGAT
TTTTCGGTATGTCGAGTTTTTGTTCAATcacttcttcaattttttcattt
ttcttgatccaactttcaaaatgaaaattcatgtttttgttttcagattt
tataATAATTGGAAAAGATTGCACTTTCTGCATTTTGATATGGTTTTTAT
CTGGGTAATTAAAGGGTTTGAAAGCTTTATGATTGGTTGTATTAATGAAG
ACTGCAAACCAATATAAACATGGTATTGGGCCCCATGAATTGATCAAAAG
TTCATCAACAGTTCCAATGTCCTTTTCGTAAACATGTAGTACAACTTGCT
CATGGCATGGGATTCCAAATATGTGACAAATCCAGCTTTTCAAATCATCT
ACGTAGAGTGAACCGACGTCTAAGAAAGGGTATGATAATTTCGTGAAACC
AATGTCCAAAAATTCCCGCATCAATCCAGGATGGTTCACAATTTCATTGG
GTTCAGGTTTCGGGGAAACGATTGTCAATTTGAAAGGTGACTTGCCAAGT
TCTGATTTAGCAACAATGTTTCCCTTGCCATTTATCAAATCTCTTCCTAT
TTCAATATCAGACCTGGTGATATCATTAGGAAAACAGGTGTTCACTTCAT
GGGCAAGGCATGCCTCTATCATAGGGAAGAAAATGCGTATTCTTGGAGGT
ACAAAGTTTCCATGGGCCAAAAAACGTTGGTCATTATTACCAAAATCTTT
GTCATTTTCTAATTTGCTTTTCTTAACGTAtcgaaatttcagattttttg
tatcACCTGTAACCACATCTAGGAATATATCCACTAGTAATTGGTCATCA
CTCAAAACAACGTGTTCATAAAGAAAATATGACATCTCACCACTGATTTT
TGCACATAATTGATTCAAATGAAACACAGTTGAGTCAATAcctaaatctt
ttttaaaatcgACTATTAAATCACCATTATATGTATAACAATACTTTCTC
CTTATGTTAAGAATTATTATGGTCTCCAACAAATGACATGCAACTTTTCT
ACGAGCCTTAACAATGTCTATATCGCCATCAAAACTATCTGTAATTTGAA
CATCCAATTCAACAACTTGATGAAAACGCTCAACATATAATGTTTTAAAA
GTCTCCTCATCCAACATTAGACCATTCTTGGTGATATTTTGACAATCTGA
TGGAATGTGAAATCGAAGCTCAActcttttcttgagattttccAGTGAAT
CTTTCACTTCGCACCAATAAAATAATGTACAATATTTCCCACTTGCCAGT
CTCAACAATAAATAATTCACCATCTTAACTTTTGACTTGAATACCTtctc
ttgaaatttttttatcactaA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056540-exon-scaffold_276-1491911889:340891..343637 | TCONS_00056540-exon-scaffold_276-1491911889:340891..343637 | Clytia hemisphaerica | exon |
| TCONS_00056540-exon-scaffold_276-1510915933:340891..343637 | TCONS_00056540-exon-scaffold_276-1510915933:340891..343637 | Clytia hemisphaerica | exon |
| TCONS_00056540-exon-scaffold_276-1575043694:340891..343637 | TCONS_00056540-exon-scaffold_276-1575043694:340891..343637 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_276 | supercontig | scaffold_276:340891..343637 . |
Blast
The following BLAST results are available for this feature:
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