TCONS_00056550 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056550
Unique NameTCONS_00056550
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length829

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056550 ID=TCONS_00056550|Name=TCONS_00056550|organism=Clytia hemisphaerica|type=transcript|length=829bp
GCTTGATAACTGTCAACCGTTTGGAATATTTATCTACGTGTGAGAAATTG
AATTTAAGCCAAAACAATATCacaaactttgatttcatccaatCATTACC
ATTATTGAAGAGTATTTATCTGTCGAACAATAATGCTATCAGTTCAATTA
ATGTTGATGAACTAAGTGATAAATTTCCTGGTTTAATTGTTACAGTGTAA
AAGAATGTTTATTATTTCTACGTGGCATACATGGTTTGTATCATTGGTTC
TAACAATAGCGAATTTATTATTTgagataaatcgaaggagacggtataaa
gcaaagttcaCATGGAGCCAAAATCGCCGCCCGCTTTGCACGAcaacggt
aaaaacaccaaaataatgTCGTCTATTTAGGTGaccaaaggcgatataga
gccatccatcaactatcgactttgcttTGCGTCGCCTTCACTTGTCGTCG
CTTTCGATATCCTcggatacataaactcgctaataatcAGATGCGGACGT
ACAACCACCTTCCAGAAGGAAGCTCTAATGATGGTCTCGCGTACTGAACC
TACTTACCATTTTTCAAGTGAAGTCCTTTTGTCATGTCAGCTGTCAGCGA
TCTTTATATACattcacttttctttttcttttttttcctttatatttttt
ttaatttgaattttgataacACGATGGACAAAATATTATTAGATTATCTG
TATGTATAAAATTAGGAaattatatatattatttttaaatattgtttagt
ttttttgtaaaattataAATACATTTTTTCAGTACCATCTCCTCATTAAT
ATAATTTGGATCTCTTAGCTTTTTCATCC
Run BLAST on NCBI

transcript from alignment at scaffold_276:484228..485056

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056550 ID=TCONS_00056550|Name=TCONS_00056550|organism=Clytia hemisphaerica|type=transcript|length=829bp|location=Sequence derived from alignment at scaffold_276:484228..485056 (Clytia hemisphaerica)
GGATGAAAAAGCTAAGAGATCCAAATTATATTAATGAGGAGATGGTACTG
AAAAAATGTATTtataattttacaaaaaaactaaacaatatttaaaaata
atatatataattTCCTAATTTTATACATACAGATAATCTAATAATATTTT
GTCCATCGTgttatcaaaattcaaattaaaaaaaatataaaggaaaaaaa
agaaaaagaaaagtgaatGTATATAAAGATCGCTGACAGCTGACATGACA
AAAGGACTTCACTTGAAAAATGGTAAGTAGGTTCAGTACGCGAGACCATC
ATTAGAGCTTCCTTCTGGAAGGTGGTTGTACGTCCGCATCTgattattag
cgagtttatgtatccgAGGATATCGAAAGCGACGACAAGTGAAGGCGACG
CAaagcaaagtcgatagttgatggatggctctatatcgcctttggtCACC
TAAATAGACGAcattattttggtgtttttaccgttgTCGTGCAAAGCGGG
CGGCGATTTTGGCTCCATGtgaactttgctttataccgtctccttcgatt
tatctcAAATAATAAATTCGCTATTGTTAGAACCAATGATACAAACCATG
TATGCCACGTAGAAATAATAAACATTCTTTTACACTGTAACAATTAAACC
AGGAAATTTATCACTTAGTTCATCAACATTAATTGAACTGATAGCATTAT
TGTTCGACAGATAAATACTCTTCAATAATGGTAATGattggatgaaatca
aagtttgtGATATTGTTTTGGCTTAAATTCAATTTCTCACACGTAGATAA
ATATTCCAAACGGTTGACAGTTATCAAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035630XLOC_035630Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056550-exon-scaffold_276-1491911889:484228..485056TCONS_00056550-exon-scaffold_276-1491911889:484228..485056Clytia hemisphaericaexon
TCONS_00056550-exon-scaffold_276-1510915933:484228..485056TCONS_00056550-exon-scaffold_276-1510915933:484228..485056Clytia hemisphaericaexon
TCONS_00056550-exon-scaffold_276-1575043694:484228..485056TCONS_00056550-exon-scaffold_276-1575043694:484228..485056Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_276supercontigscaffold_276:484228..485056 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
17.6816	16.0698	4.97242	3.42289	6.40489	5.30514	9.41672	10.5377	5.59352	7.58549	6.95685	4.30499	5.2115	4.90076	6.66099	4.70739	9.9659	7.57299	2.61562	4.07376	5.53256	6.96236	14.959	14.4947	4.36202	4.22198	2.90313	3.43325	8.8917	8.53723
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056550 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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