TCONS_00056561 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056561
Unique NameTCONS_00056561
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1497

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056561 ID=TCONS_00056561|Name=TCONS_00056561|organism=Clytia hemisphaerica|type=transcript|length=1497bp
TTGCAATAGGAGatctttttattcataaaaagtaAGATTTTTAACTTGCA
ATATAGCACTTTTTAGCAGGGATTTTAATATCTATTTAAgcaaccttttt
caaatttttgaccaattttgacttttgacaaacctttttaaattgtgCCA
GATGCCTCACATTAGGTTtagttttcacttttaaaaTATACATAAATTCT
TCCATATTCATATTAACCTTTGAAAGCCTTTTCTTTGAAAGAATATGGTT
TGCTACTGTAAGTCTAAAAATTGTTTCCTTCCAGTTTCACTAAACTTGTA
TACAGCCTCAAAACAAAcataataaatttaaaaaagattcttacctctct
tgaaaaattgaaattgcagTCCACAATATGCTTGAGAAGTTTGGGTGTTG
TATCAGCACTAAAAGGGAGGTGGCCACTCAACATAACGTAAACAATGACA
CCAACCGCCCAAAGGTCTACTTTACTGCTATAAGGTACTTTTTGCAACAA
TTCAGGTGCAATATATTCCGGAGTCCCGCAccaagttgtcatcttgaagt
CCAAAGATTGTGTCTTTATCTTAGAAAATCCAAAGTCAGTTATTACAATT
TTCGAATCCTTTCCAGGATgataaaaaagcaaattttcaGGTTTAAGATC
TCTATGCGTCACTCCATGACTGTGTAAATATGAAAGTCCCTCTAAAATCA
TTTGTGTTACGTTACAACTGTAAGCTTCATCTAAATGTCCTCTACTTTTA
ATTCTATCATAAAGCTCTCCACCGGTAGCCAGCTCCATGATCAAATATGT
ACAGTCTTTTGATATAATAACCTCTTCTAAATGTATGATATAACGATGGG
CGAATGTTTGTAACACAGAAAGTTCTGCGTTCAATAATTCTTCTTCTTGT
TCGTTTCTTACTTTCAATATTTTAACTGCAAACGGTTGACACGTCACCTT
ACAATCTACTCTCAAAACATCACTAAAAGAGCCTTTACCAACCAAGGCTt
taatttcgtattttgctgtgACTCGAGaatctatttttgttttgtactTT
GGGTGATTTAGTGTTGTTTGCACAACGTTGCTCAAAggttcataattttc
tttatcAAGTTTATTATTTGAGAAGTTATCCACTTTATCTGGCTCCTTTA
GAGGGTTTTTGATCTGGGTATTACTGTAATTGGTAGTTATAACACTGTCT
TTGGGGCTTGGACTAACACCAGCCTCTAAATCAAGTTCTTCTTTGCCATG
ACTGCAACCCATAATGATGACAAGAAAATGTATGcaaaaaaagaaagcaa
atgTTAGCATAATACTTTTAGTTTCACTTTCTTTCTCATCTCCTCCTTCT
CAAGTTTCAACAAATAATGGAAAACAAGAAGTTTACAATTTCATAGAAAA
gacatttcttaaaaaaacaagtgtaaaaatattgaaacctgAATCCTTCT
TTCTGTCCTTGTGTGTTTTTCTTGCCGACGGCAAAACCAGAGTGAAT
Run BLAST on NCBI

protein sequence of TCONS_00056561-protein

>TCONS_00056561-protein ID=TCONS_00056561-protein|Name=TCONS_00056561-protein|organism=Clytia hemisphaerica|type=polypeptide|length=348bp
MLTFAFFFCIHFLVIIMGCSHGKEELDLEAGVSPSPKDSVITTNYSNTQI
KNPLKEPDKVDNFSNNKLDKENYEPLSNVVQTTLNHPKYKTKIDSRVTAK
YEIKALVGKGSFSDVLRVDCKVTCQPFAVKILKVRNEQEEELLNAELSVL
QTFAHRYIIHLEEVIISKDCTYLIMELATGGELYDRIKSRGHLDEAYSCN
VTQMILEGLSYLHSHGVTHRDLKPENLLFYHPGKDSKIVITDFGFSKIKT
QSLDFKMTTWCGTPEYIAPELLQKVPYSSKVDLWAVGVIVYVMLSGHLPF
SADTTPKLLKHIVDCNFNFSREVRIFFKFIMFVLRLYTSLVKLEGNNF
Run BLAST on NCBI

transcript from alignment at scaffold_276:831294..832790

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056561 ID=TCONS_00056561|Name=TCONS_00056561|organism=Clytia hemisphaerica|type=transcript|length=1497bp|location=Sequence derived from alignment at scaffold_276:831294..832790 (Clytia hemisphaerica)
ATTCACTCTGGTTTTGCCGTCGGCAAGAAAAACACACAAGGACAGAAAGA
AGGATTcaggtttcaatatttttacacttgtttttttaagaaatgtcTTT
TCTATGAAATTGTAAACTTCTTGTTTTCCATTATTTGTTGAAACTTGAGA
AGGAGGAGATGAGAAAGAAAGTGAAACTAAAAGTATTATGCTAAcatttg
ctttctttttttgCATACATTTTCTTGTCATCATTATGGGTTGCAGTCAT
GGCAAAGAAGAACTTGATTTAGAGGCTGGTGTTAGTCCAAGCCCCAAAGA
CAGTGTTATAACTACCAATTACAGTAATACCCAGATCAAAAACCCTCTAA
AGGAGCCAGATAAAGTGGATAACTTCTCAAATAATAAACTTgataaagaa
aattatgaaccTTTGAGCAACGTTGTGCAAACAACACTAAATCACCCAAa
gtacaaaacaaaaatagattCTCGAGTcacagcaaaatacgaaattaaAG
CCTTGGTTGGTAAAGGCTCTTTTAGTGATGTTTTGAGAGTAGATTGTAAG
GTGACGTGTCAACCGTTTGCAGTTAAAATATTGAAAGTAAGAAACGAACA
AGAAGAAGAATTATTGAACGCAGAACTTTCTGTGTTACAAACATTCGCCC
ATCGTTATATCATACATTTAGAAGAGGTTATTATATCAAAAGACTGTACA
TATTTGATCATGGAGCTGGCTACCGGTGGAGAGCTTTATGATAGAATTAA
AAGTAGAGGACATTTAGATGAAGCTTACAGTTGTAACGTAACACAAATGA
TTTTAGAGGGACTTTCATATTTACACAGTCATGGAGTGACGCATAGAGAT
CTTAAACCtgaaaatttgcttttttatcATCCTGGAAAGGATTCGAAAAT
TGTAATAACTGACTTTGGATTTTCTAAGATAAAGACACAATCTTTGGact
tcaagatgacaacttggTGCGGGACTCCGGAATATATTGCACCTGAATTG
TTGCAAAAAGTACCTTATAGCAGTAAAGTAGACCTTTGGGCGGTTGGTGT
CATTGTTTACGTTATGTTGAGTGGCCACCTCCCTTTTAGTGCTGATACAA
CACCCAAACTTCTCAAGCATATTGTGGActgcaatttcaatttttcaaga
gaggtaagaatcttttttaaatttattatgTTTGTTTTGAGGCTGTATAC
AAGTTTAGTGAAACTGGAAGGAAACAATTTTTAGACTTACAGTAGCAAAC
CATATTCTTTCAAAGAAAAGGCTTTCAAAGGTTAATATGAATATGGAAGA
ATTTATGTATAttttaaaagtgaaaactaAACCTAATGTGAGGCATCTGG
cacaatttaaaaaggtttgtcaaaagtcaaaattggtcaaaaatttgaaa
aaggttgcTTAAATAGATATTAAAATCCCTGCTAAAAAGTGCTATATTGC
AAGTTAAAAATCTtactttttatgaataaaaagatCTCCTATTGCAA

Coding sequence (CDS) from alignment at scaffold_276:831294..832790

>TCONS_00056561 ID=TCONS_00056561|Name=TCONS_00056561|organism=Clytia hemisphaerica|type=CDS|length=1047bp|location=Sequence derived from alignment at scaffold_276:831294..832790 (Clytia hemisphaerica)
ATGCTAAcatttgctttctttttttgCATACATTTTCTTGTCATCATTAT
GGGTTGCAGTCATGGCAAAGAAGAACTTGATTTAGAGGCTGGTGTTAGTC
CAAGCCCCAAAGACAGTGTTATAACTACCAATTACAGTAATACCCAGATC
AAAAACCCTCTAAAGGAGCCAGATAAAGTGGATAACTTCTCAAATAATAA
ACTTgataaagaaaattatgaaccTTTGAGCAACGTTGTGCAAACAACAC
TAAATCACCCAAagtacaaaacaaaaatagattCTCGAGTcacagcaaaa
tacgaaattaaAGCCTTGGTTGGTAAAGGCTCTTTTAGTGATGTTTTGAG
AGTAGATTGTAAGGTGACGTGTCAACCGTTTGCAGTTAAAATATTGAAAG
TAAGAAACGAACAAGAAGAAGAATTATTGAACGCAGAACTTTCTGTGTTA
CAAACATTCGCCCATCGTTATATCATACATTTAGAAGAGGTTATTATATC
AAAAGACTGTACATATTTGATCATGGAGCTGGCTACCGGTGGAGAGCTTT
ATGATAGAATTAAAAGTAGAGGACATTTAGATGAAGCTTACAGTTGTAAC
GTAACACAAATGATTTTAGAGGGACTTTCATATTTACACAGTCATGGAGT
GACGCATAGAGATCTTAAACCtgaaaatttgcttttttatcATCCTGGAA
AGGATTCGAAAATTGTAATAACTGACTTTGGATTTTCTAAGATAAAGACA
CAATCTTTGGacttcaagatgacaacttggTGCGGGACTCCGGAATATAT
TGCACCTGAATTGTTGCAAAAAGTACCTTATAGCAGTAAAGTAGACCTTT
GGGCGGTTGGTGTCATTGTTTACGTTATGTTGAGTGGCCACCTCCCTTTT
AGTGCTGATACAACACCCAAACTTCTCAAGCATATTGTGGActgcaattt
caatttttcaagagaggtaagaatcttttttaaatttattatgTTTGTTT
TGAGGCTGTATACAAGTTTAGTGAAACTGGAAGGAAACAATTTTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035641XLOC_035641Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056561-proteinTCONS_00056561-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056561-exon-scaffold_276-1491911889:831294..832790TCONS_00056561-exon-scaffold_276-1491911889:831294..832790Clytia hemisphaericaexon
TCONS_00056561-exon-scaffold_276-1510915933:831294..832790TCONS_00056561-exon-scaffold_276-1510915933:831294..832790Clytia hemisphaericaexon
TCONS_00056561-exon-scaffold_276-1575043694:831294..832790TCONS_00056561-exon-scaffold_276-1575043694:831294..832790Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_276supercontigscaffold_276:831294..832790 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.95807	4.13652	2.43264	2.89867	19.3158	15.1755	11.0843	11.9021	5.15295	7.2453	5.41388	4.49445	6.7781	7.4767	4.0197	4.98516	4.15624	6.20987	7.58372	6.21996	4.82037	5.02717	9.8537	9.7624	5.14582	7.57502	10.1222	10.9639	6.32853	6.47892
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000719Prot_kinase_dom
IPR017441Protein_kinase_ATP_BS
IPR008271Ser/Thr_kinase_AS
IPR011009Kinase-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004672protein kinase activity
GO:0005524ATP binding
Vocabulary: Biological Process
TermDefinition
GO:0006468protein phosphorylation
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006468 protein phosphorylation
molecular_function GO:0005524 ATP binding
molecular_function GO:0004672 protein kinase activity
Blast
[Close]
BLAST of TCONS_00056561 vs. Swiss-Prot (Human)
Match: KPSH2 (Serine/threonine-protein kinase H2 OS=Homo sapiens GN=PSKH2 PE=2 SV=1)

HSP 1 Score: 254.603 bits (649), Expect = 8.741e-79
Identity = 116/235 (49.36%), Postives = 172/235 (73.19%), Query Frame = -2 
Query:  345 KYKTKIDSRVTAKYEIKALVGKGSFSDVLRVDCKVTCQPFAVKILKVRXXXXXXXXXXXLSVLQTFAHRYIIHLEEVIISKDCTYLIMELATGGELYDRIKSRGHLDEAYSCNVTQMILEGLSYLHSHGVTHRDLKPENLLFYHPGKDSKIVITDFGFSKIKTQSLDFKMTTWCGTPEYIAPELLQKVPYSSKVDLWAVGVIVYVMLSGHLPFSADTTPKLLKHIVDCNFNFSRE 1049
            +++ K D RV A+Y+IKAL+G GSFS V+RV+ K T +PFA+K+++ R  +  E   +ELSVL+  +HRYI+ L E+  ++D  Y++MELATGGEL+DR+ ++G   E  +  + QM+ +G+ YLH+  +THR+LKPENLL+YHPG++SKI+ITDFG +    +S D+ M T CGTPEYIAPE+L + PY+S VD+WA+GVI Y +LSG LPF  ++  +L + I+   +N++ E
Sbjct:   50 RFRAKFDPRVLARYDIKALIGTGSFSRVVRVEQKTTKKPFAIKVMETREREGREACVSELSVLRRVSHRYIVQLMEIFETEDQVYMVMELATGGELFDRLIAQGSFTERDAVRILQMVADGIRYLHALQITHRNLKPENLLYYHPGEESKILITDFGLAYSGKKSGDWTMKTLCGTPEYIAPEVLLRKPYTSAVDMWALGVITYALLSGFLPFDDESQTRLYRKILKGKYNYTGE 284
The following BLAST results are available for this feature:
BLAST of TCONS_00056561 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KPSH28.741e-7949.36Serine/threonine-protein kinase H2 OS=Homo sapiens... [more]
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