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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056597 ID=TCONS_00056597|Name=TCONS_00056597|organism=Clytia hemisphaerica|type=transcript|length=591bp
ATATGGAGATTCATTCCTCTCAGCCAACAACACGTCGTCAAGTGTCAAAG
TGAAACTACGCAATACTTCATTGAAGTTCGGTGATGATCTTGAAACCAGC
ACACTTTTTCTTAACAAATACGGTCATGTCGGGCTTGGAGAGCTACCACC
TGATGACATCATCTGGATTCCACATTCCAAATCCACTTTTATAGCGGGAT
TCGCCACTCAATGGCCGTCAGATATTTATTACCGGTTACATCAGAATCCG
GAAACCACCTGGAAGAGAAAATTTCCTGATAGCAATTTCAAACCTGCGGA
ACTACTTATTATGACTTATAAAACTCCAGAAAATCAACCTAGCTTGAACG
CTATTGATTACCAAATGGTGCTGGCTTTTGATAATCAATCAAGAGTCGCC
ATGGCAATCAAATATGTTAGACTAGATGCCGAGTATGGTTTTACCGGTAT
TAATATTCAAGAATGTCATTCAGAATTATGGTCTTCTAGTTTAGCTATGA
ATCTTGAAACTCGCAATGAGGAAGGAATCAACAGTACTGGATACGTAGTG
AAAGATGAGTTAAATTTTGGTTGCGACGCTTATCGTAAAAC Run BLAST on NCBI protein sequence of TCONS_00056597-protein >TCONS_00056597-protein ID=TCONS_00056597-protein|Name=TCONS_00056597-protein|organism=Clytia hemisphaerica|type=polypeptide|length=196bp
YGDSFLSANNTSSSVKVKLRNTSLKFGDDLETSTLFLNKYGHVGLGELPP
DDIIWIPHSKSTFIAGFATQWPSDIYYRLHQNPETTWKRKFPDSNFKPAE
LLIMTYKTPENQPSLNAIDYQMVLAFDNQSRVAMAIKYVRLDAEYGFTGI
NIQECHSELWSSSLAMNLETRNEEGINSTGYVVKDELNFGCDAYRK Run BLAST on NCBI transcript from alignment at scaffold_277:4260..5488- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056597 ID=TCONS_00056597|Name=TCONS_00056597|organism=Clytia hemisphaerica|type=transcript|length=1229bp|location=Sequence derived from alignment at scaffold_277:4260..5488- (Clytia hemisphaerica)
ATATGGAGATTCATTCCTCTCAGCCAACAACACGTCGTCAAGTGTCAAAG
TGAAACTACGCAATACTTCATTGAAGTTCGGTGATGATCTTGAAACCAGC
ACACTTTTTGTAAGATGGTGTCATTTTTAAATAAATAACCAGACGGTTTT
GTTGGTATACTTTGGGGACCCTCCAAGCCTTATATTTATGTTACTTTTAG
ATTACTATTGTACCGTCAATTCTGTTGAAAACACGAAAGCTCAAATTTGA
CCACTTATAGGAATTCGAGCCTCAGAGTTCAGAAAAATACTTAGAAAATA
CAGATCTTAAAATATTAGGCGAGAGCAAATTAATTCATTGTTCTACGGGC
CTGACCGACTCTGTTAATTCTAAAATGGAAAAAAAATTGAATTTGCAAAA
GCTAGAAGAAGATTTTGGAGATATTTTTAGTTGGATTTTTTAGTTGAAAA
AGTGTAAATTCATCCGAGAACTTTGGATTTAAGATATCAAAATGGAAGCA
CGAACGTCGCTCATCGATAAAGAGGAAAAAGTCTACTGCTTCAAAACGTC
ACAATTTCTTTAGATCGTGACTTTCCGATCCTCGATTTTGAGAAATTTAT
TACATTTGTCTCGCCTTATACATCTTAGAGAATTCTAGCCTGAGAAAAAA
GTAAAATCGAACAAAAACTGTTCATATAAAAAAGTAAGTTATTTTCATAA
TGTATTTTCCAAGATTAATTTATTTATTCCAACATTTTTTTTATCAGCTT
AACAAATACGGTCATGTCGGGCTTGGAGAGCTACCACCTGATGACATCAT
CTGGATTCCACATTCCAAATCCACTTTTATAGCGGGATTCGCCACTCAAT
GGCCGTCAGATATTTATTACCGGTTACATCAGAATCCGGAAACCACCTGG
AAGAGAAAATTTCCTGATAGCAATTTCAAACCTGCGGAACTACTTATTAT
GACTTATAAAACTCCAGAAAATCAACCTAGCTTGAACGCTATTGATTACC
AAATGGTGCTGGCTTTTGATAATCAATCAAGAGTCGCCATGGCAATCAAA
TATGTTAGACTAGATGCCGAGTATGGTTTTACCGGTATTAATATTCAAGA
ATGTCATTCAGAATTATGGTCTTCTAGTTTAGCTATGAATCTTGAAACTC
GCAATGAGGAAGGAATCAACAGTACTGGATACGTAGTGAAAGATGAGTTA
AATTTTGGTTGCGACGCTTATCGTAAAAC Coding sequence (CDS) from alignment at scaffold_277:4260..5488- >TCONS_00056597 ID=TCONS_00056597|Name=TCONS_00056597|organism=Clytia hemisphaerica|type=CDS|length=1176bp|location=Sequence derived from alignment at scaffold_277:4260..5488- (Clytia hemisphaerica)
CTTAACAAATACGGTCATGTCGGGCTTGGAGAGCTACCACCTGATGACAT
CATCTGGATTCCACATTCCAAATCCACTTTTATAGCGGGATTCGCCACTC
AATGGCCGTCAGATATTTATTACCGGTTACATCAGAATCCGGAAACCACC
TGGAAGAGAAAATTTCCTGATAGCAATTTCAAACCTGCGGAACTACTTAT
TATGACTTATAAAACTCCAGAAAATCAACCTAGCTTGAACGCTATTGATT
ACCAAATGGTGCTGGCTTTTGATAATCAATCAAGAGTCGCCATGGCAATC
AAATATGTTAGACTAGATGCCGAGTATGGTTTTACCGGTATTAATATTCA
AGAATGTCATTCAGAATTATGGTCTTCTAGTTTAGCTATGAATCTTGAAA
CTCGCAATGAGGAAGGAATCAACAGTACTGGATACGTAGTGAAAGATGAG
TTAAATTTTGGTTGCGACGCTTATCGTAAATATGGAGATTCATTCCTCTC
AGCCAACAACACGTCGTCAAGTGTCAAAGTGAAACTACGCAATACTTCAT
TGAAGTTCGGTGATGATCTTGAAACCAGCACACTTTTTCTTAACAAATAC
GGTCATGTCGGGCTTGGAGAGCTACCACCTGATGACATCATCTGGATTCC
ACATTCCAAATCCACTTTTATAGCGGGATTCGCCACTCAATGGCCGTCAG
ATATTTATTACCGGTTACATCAGAATCCGGAAACCACCTGGAAGAGAAAA
TTTCCTGATAGCAATTTCAAACCTGCGGAACTACTTATTATGACTTATAA
AACTCCAGAAAATCAACCTAGCTTGAACGCTATTGATTACCAAATGGTGC
TGGCTTTTGATAATCAATCAAGAGTCGCCATGGCAATCAAATATGTTAGA
CTAGATGCCGAGTATGGTTTTACCGGTATTAATATTCAAGAATGTCATTC
AGAATTATGGTCTTCTAGTTTAGCTATGAATCTTGAAACTCGCAATGAGG
AAGGAATCAACAGTACTGGATACGTAGTGAAAGATGAGTTAAATTTTGGT
TGCGACGCTTATCGTAAATATGGAGATTCATTCCTCTCAGCCAACAACAC
GTCGTCAAGTGTCAAAGTGAAACTACGCAATACTTCATTGAAGTTCGGTG
ATGATCTTGAAACCAGCACACTTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056597-exon-scaffold_277-1575043694:5380..5488 | TCONS_00056597-exon-scaffold_277-1575043694:5380..5488 | Clytia hemisphaerica | exon |
| TCONS_00056597-exon-scaffold_277-1575043694:4260..4741 | TCONS_00056597-exon-scaffold_277-1575043694:4260..4741 | Clytia hemisphaerica | exon |
| TCONS_00056597-exon-scaffold_277-1510915933:5380..5488 | TCONS_00056597-exon-scaffold_277-1510915933:5380..5488 | Clytia hemisphaerica | exon |
| TCONS_00056597-exon-scaffold_277-1510915933:4260..4741 | TCONS_00056597-exon-scaffold_277-1510915933:4260..4741 | Clytia hemisphaerica | exon |
| TCONS_00056597-exon-scaffold_277-1491911889:5380..5488 | TCONS_00056597-exon-scaffold_277-1491911889:5380..5488 | Clytia hemisphaerica | exon |
| TCONS_00056597-exon-scaffold_277-1491911889:4260..4741 | TCONS_00056597-exon-scaffold_277-1491911889:4260..4741 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_277 | supercontig | scaffold_277:4260..5488 - |
Blast
The following BLAST results are available for this feature:
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