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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056601 ID=TCONS_00056601|Name=TCONS_00056601|organism=Clytia hemisphaerica|type=transcript|length=2537bpRun BLAST on NCBI protein sequence of TCONS_00056601-protein >TCONS_00056601-protein ID=TCONS_00056601-protein|Name=TCONS_00056601-protein|organism=Clytia hemisphaerica|type=polypeptide|length=334bp MRLSSIRTTCPSQRNCDFISMLSRPMQEHFERISLFTMASSSYEIGGIFNRun BLAST on NCBI transcript from alignment at scaffold_277:15462..49661- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00056601 ID=TCONS_00056601|Name=TCONS_00056601|organism=Clytia hemisphaerica|type=transcript|length=34200bp|location=Sequence derived from alignment at scaffold_277:15462..49661- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_277:15462..49661- >TCONS_00056601 ID=TCONS_00056601|Name=TCONS_00056601|organism=Clytia hemisphaerica|type=CDS|length=12060bp|location=Sequence derived from alignment at scaffold_277:15462..49661- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00056601 vs. Swiss-Prot (Human)
Match: RBM34 (RNA-binding protein 34 OS=Homo sapiens GN=RBM34 PE=1 SV=2) HSP 1 Score: 166.007 bits (419), Expect = 6.394e-44 Identity = 91/198 (45.96%), Postives = 129/198 (65.15%), Query Frame = 3
Query: 606 DEESPERKARTVFVGNVAXXXXXXXXXXIFSKFGEIESIRIRSVPRADPKTSKKVAFIKKEFHDERDNMNAYVVFKNKEDAVKSLKSNGI-IVEEKHIRVDLSENKKHNTSASIFVGNLPFNAKEDDLREHFAKCGNIEDIRVVRDKATGIGKGFAYIRFKGKENVMFGLKMNGSEFDGRKLRVFKAKDKEEVNTTNT 1196
EE + RTVFVGN+ +T KK LK F ++G+IES+R RS+ A+ SKK+A IK++ H ++ N+NAYVVFK + A ++LK NG I + IRVDL+ S+FVGNLP+ +E + +HF CG+I +R+VRDK TGIGKGF Y+ F+ ++V LK+N SE GRKLRV ++ +KE+ N+
Sbjct: 176 QEEERLKNERTVFVGNLPVTCNKKKLKSFFKEYGQIESVRFRSLIPAEGTLSKKLAAIKRKIHPDQKNINAYVVFKEESAATQALKRNGAQIADGFRIRVDLASETSSRDKRSVFVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHLALKLNNSELMGRKLRVMRSVNKEKFKQQNS 373 The following BLAST results are available for this feature:
BLAST of TCONS_00056601 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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