TCONS_00056618 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056618
Unique NameTCONS_00056618
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1039

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056618 ID=TCONS_00056618|Name=TCONS_00056618|organism=Clytia hemisphaerica|type=transcript|length=1039bp
Gtccttttgattttattttaataaacatttttcttcgaaataaatatttt
cgaaaatatctttttttgcattataaaaaaataaaaacacaaaatctgCA
TAAATCTGCATAAATCTTCTATAATTGCTTCTTCTTCTCTTTTCCATCGA
AAGAGTGAACCAAATCCAGAATGGTTACTAATGGTTAcacaaaaccaaaa
caaaagaaaacagaacATAACAAAATGGTAGCCAccaccatagatttata
aagcccaaagggctagatggagtgctttaagctcttccaagcaaaaaaaa
atgaatatcgcaaaaaatattgctgctattgttttcgaaaacccgcgaag
cttctgattggtcaagcactgAAATTCTAATGTAATGTCACATGACTTTT
TTTGACGTGacaattttcagcaaaagcacaaTATCTAGCCCTCCAGGCTT
TACAAATCTTTGGCCACCACTAGCAGGCTTTCTGCACCTTTCTATAAAAA
CTTGATATATCTATATCCGTCTATTTCCATGCTTTTAATGGTAATAGTGT
AGTCATAGTTTTGGTGCTCAGAGTTTGGATACCGTTAAAATACATTCCAG
CAATTCCAATCTGTCCATGCAGATAGATACAATGGTACATGGCAATGACA
ACACCAATTCAAAAATCCTAAAACCATCATCTTGATTAAAGTGTTAGTAT
CTGAGCGTATACAAAGGTCTATGTGGATAAATCCATGGAGTCAAATCATT
GGTGAGCAtacattttcttataaacaaaTATCAACATTTGAGTATGTGAT
GACACCGCTCCCAATCACATACTGAATCATCATTTGGATCATTCTCTCAC
AAATGACAGcatttttcgtttttgtttACAACCCTCAAATAATACTACTT
TTATCAACTTTGAAAGAGACTTCTACACCAGTCTTGATGTTGAGGAGTTT
CAATGTGGAAATATACAGCTCTTGGATGTTGACAAACCACTTGGCAGAGA
GGACATTCAACTGTCGTTTGAAATGGAATCAATGAActg
Run BLAST on NCBI

transcript from alignment at scaffold_277:384985..386242-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056618 ID=TCONS_00056618|Name=TCONS_00056618|organism=Clytia hemisphaerica|type=transcript|length=1258bp|location=Sequence derived from alignment at scaffold_277:384985..386242- (Clytia hemisphaerica)
GTCCTTTTGATTTTATTTTAATAAACATTTTTCTTCGAAATAAATATTTT
CGAAAATATCTTTTTTTGCATTATAAAAAAATAAAAACACAAAATCTGCA
TAAATCTGCATAAATCTTCTATAATTGCTTCTTCTTCTCTTTTCCATCGA
AAGAGTGAACCAAATCCAGAATGGTTACTAATGGTTACACAAAACCAAAA
CAAAAGAAAACAGAACATAACAAAATGGTAGCCACCACCATAGATTTATA
AAGCCCAAAGGGCTAGATGGAGTGCTTTAAGCTCTTCCAAGCAAAAAAAA
ATGAATATCGCAAAAAATATTGCTGCTATTGTTTTCGAAAACCCGCGAAG
CTTCTGATTGGTCAAGCACTGAAATTCTAATGTAATGTCACATGACTTTT
TTTGACGTGACAATTTTCAGCAAAAGCACAATATCTAGCCCTCCAGGCTT
TACAAATCTTTGGCCACCACTAGCAGGCTTTCTGCACCTTTCTATAAAAA
CTTGATATATCTATATCCGTCTATTTCCATGCTTTTAATGGTAATAGTGT
AGTCATAGTTTTGGTGCTCAGAGTTTGGATACCGTTAAAATACATTCCAG
CAATTCCAATCTGTCCATGCAGATAGATACAATGGTACATGGCAATGACA
ACACCAATTCAAAAATCCTAAAACCATCATCTTGGTTAAAGTGTTAGNAT
GACAACACGAATTCAAAAATCCTAAAACCATCATCTAGATTAAAGTGTTA
GTATCTGAGCGTATACAAAGGTCTATGTGGATAAATCCATGGAGTCAAAT
CATTGGTGAGCATACATTTTCTTATAAACAAATATCAACATTAGAGTATG
ACACCGCTTCCAATCTAGACAACACGAAAAATCCTAAAACCAGCATCGTT
GAAGTATTAGTTTCTGAGCGTATAAATCCAAATGTTAATGTGGATAACTC
CATTTAAAGTCAAATCATTGGTGAACCCATATTCTCTTATAGACAAATAT
TAACATTTGAGTATGTGATGACACCGCTCCCAATCACATACTGAATCATC
ATTTGGATCATTCTCTCACAAATGACAGCATTTTTCGTTTTTGTTTACAA
CCCTCAAATAATACTACTTTTATCAACTTTGAAAGAGACTTCTACACCAG
TCTTGATGTTGAGGAGTTTCAATGTGGAAATATACAGCTCTTGGATGTTG
ACAAACCACTTGGCAGAGAGGACATTCAACTGTCGTTTGAAATGGAATCA
ATGAACTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035656XLOC_035656Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056618-exon-scaffold_277-1575043694:385559..386242TCONS_00056618-exon-scaffold_277-1575043694:385559..386242Clytia hemisphaericaexon
TCONS_00056618-exon-scaffold_277-1575043694:385404..385504TCONS_00056618-exon-scaffold_277-1575043694:385404..385504Clytia hemisphaericaexon
TCONS_00056618-exon-scaffold_277-1575043694:384985..385238TCONS_00056618-exon-scaffold_277-1575043694:384985..385238Clytia hemisphaericaexon
TCONS_00056618-exon-scaffold_277-1510915933:385559..386242TCONS_00056618-exon-scaffold_277-1510915933:385559..386242Clytia hemisphaericaexon
TCONS_00056618-exon-scaffold_277-1510915933:385404..385504TCONS_00056618-exon-scaffold_277-1510915933:385404..385504Clytia hemisphaericaexon
TCONS_00056618-exon-scaffold_277-1510915933:384985..385238TCONS_00056618-exon-scaffold_277-1510915933:384985..385238Clytia hemisphaericaexon
TCONS_00056618-exon-scaffold_277-1491911889:385559..386242TCONS_00056618-exon-scaffold_277-1491911889:385559..386242Clytia hemisphaericaexon
TCONS_00056618-exon-scaffold_277-1491911889:385404..385504TCONS_00056618-exon-scaffold_277-1491911889:385404..385504Clytia hemisphaericaexon
TCONS_00056618-exon-scaffold_277-1491911889:384985..385238TCONS_00056618-exon-scaffold_277-1491911889:384985..385238Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_277supercontigscaffold_277:384985..386242 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.598172	0.227215	0	0	0.39234	0.266777	0.207214	0.84553	0.105747	0.566178	0.449548	0	0.0750877	0.24559	0.0634263	0.222304	0.72216	0.472338	0	0	0.458671	0.716474	0.385852	0.668072	0.215569	1.04686	1.46215	1.32558	0.553594	0.163401
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056618 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top