TCONS_00056620 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056620
Unique NameTCONS_00056620
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length883

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056620 ID=TCONS_00056620|Name=TCONS_00056620|organism=Clytia hemisphaerica|type=transcript|length=883bp
AGCACTCACAGGTTTTGCATAAAAGGACCAGCAAAATGCCATTCCAAATC
ATTCAAACATTTTTGCATCAAAGCTGAAGTAGAGAAGAGCATAATGAAGT
TAGGAACGTTGTTGTTAGCAACTTGTTTGGCTTTTGCCAGTGGAGCCTGG
GTACCAGAAATGGAAAACGAAGGTCTTTACGAAGGAGACATGATTTTAGA
TCCTGACCAGCAGAAGGAGGTCGAAGATGGAACTTTCACTTTCTCATCCA
CTGGCAACAGAAACAAACTGTGGCCAAACGCTGTCGTTCCTTACTCATTG
ACTTCTGATTtagCCCGTGATGGAAAATTCATGCGTGAATTTCAACATTC
GATCGATCAATATCACAAATATACTTGTATTCGCTTTAAGAGACGATCAA
ATGAACGAGCTTATATCGGCTTTTACATGGGTGGAGGTTGTTCGTCACCA
GTCGGTTATACCGGCGGCCGAAATAGGGTTTCGTTATCCAAAGGATGTCA
TTGGAGATCAACCATCATGCATGAAATCGGTCACAGTTTAGGTTTCCACC
ACGAGCAGTCACGTCCTGACAGAGACAACCACGTCACCATTTTATTCCAC
AACGTCGCCCGGGGAACGGAACATAATTTCAAGAAACAATCATACTCTAC
AACTGACTCAAAGGGCACTCCATACGATTACAGATCAATGATGCATTACT
CATGGGACGCATTCGGTTCCGGCAAAATGACCATTCAGACAAAAGATCCC
AGCATGCAATACGAGATCGGTATTGGACAAGGCGATCAGGGATTCAGTGA
CATTGATATCAAACAATTGAATTTACTCTACGGATGTTcACAAAGCAACG
AAAGATTACCACCCTACACACCACCATCCAAAG
Run BLAST on NCBI

transcript from alignment at scaffold_277:396533..402649-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056620 ID=TCONS_00056620|Name=TCONS_00056620|organism=Clytia hemisphaerica|type=transcript|length=6117bp|location=Sequence derived from alignment at scaffold_277:396533..402649- (Clytia hemisphaerica)
AGCACTCACAGGTTTTGCATAAAAGGACCAGCAAAATGCCATTCCAAATC
ATTCAAACATTTTTGCATCAAAGCTGAAGTAGAGAAGAGCATAATGAAGT
TAGGAACGTTGTTGTTAGCAACTTGTTTGGCTTTTGCCAGTGGAGCCTGG
GTACCAGAAATGGAAAGTAAGTTAAAGCAAGCTTATTGACATTTTATATT
TTTCAGATCATTTAGCGCATTGGGCTTTTTCAGAAATAAATTTGATTACA
CGTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNACGGTGATATACCTTTCGGTAATTAGTTCTTACAAAGTA
AACAAAGTATGGCGCACAATATGAGCATATTTATTTTTCTTATAAGCATA
TAATTTATAAGAATCAAATCAATAACTATTGATAGACGGTAATATACCTT
TCGGTAATTAGTTCTTACAAAGTAAACAAAGTATGGCGCACAATATGAGC
ATATTTATTTTTCTTATAAGCATATACTTTATAAGAATCCAATCTATAAC
TCTTGATAGACGATGATATGCCTTTCGGTAATTAGTTCTTACAAAGTAAA
CAAGGTATGGCGCACAATATGACCTTATTTATTTTTCTTATAAGCATATA
CTTTATAAGAATCCAATCTATAACTCTTGATAGACGATGATATGCCTTTC
GGTAATTAGTTCTTACAAAGTAAACAAGGTATGGCGCACAATATGACCTT
ATTTATTTTTCTTATAAGCATATACTTTATAAGAATCCAATCTATAACTC
TTGATAGACGATGATATGCCTTTCGGTAATTAGTTCTTACAAAGTAAACA
AAGTATGGCGCACAATATGAGCATATTTATTTTTCTTATAAGCATATACT
TTACAAGAATCAAATCAATAACTCTTGATAGACGGTGATATACCTTTCGG
TAATTAGTTCTTATAAAGTAAACAAAGTATGGCGCACAATATGAGCATAT
TCATTTTTCTTATATAAGCATTTGTTTTATAAGAATCAAATAAATAACTT
TTGATAGACGGTGATATTACCTTTGTTTATTAGTTCTTAAAAATTAAACA
ACAGTTTGTTCTTAAATTGGTCTCTTTTTTTAGCGATTTTAAGCCTCGTT
GTTCTTGTAAAATTGTTTCATCAAGGCTCGATGTAAAATAGATTTCAAAT
TGGCTTCAATCTCTACTTCTCGTTTTTTCCTATGTAGTTTAAATTCTAGG
CGAAATTTTCGACTTTAAGTCGTCTTGTTTTGTATCATATTGTCGATTTA
GAGTAGTCTGAAAAATTAAGAACGCATTTAAGAACATTTTAGACTGAAAA
TTGCTAAAAAAAATAAGCACATCCTGGCTCAGCCAAATTTTAGGTGTTCT
AATAAAAAAAAACGTGTATGGGGGCTGGATGATATAACATTTTTTAGAAA
TTTACCCCCGGACATTGTGAATTTTGACCCCCGGACAAGCATCAGTTGAC
CCCCTGGACATTGAAAATAACCCCCACACAGAGCAAGCTTATTTCCCGGA
CAGGGCAAATTTTGTAGATTTTTCACTAATTTTTGGATTTGAGCATCCTG
TCTCCGTGTAACTGAACAATTTCAATTGACTTGTTAAATTATCAACTGTA
ACAACGTTCTTCCTATTCTTTCATATCATTTTAGACGAAGGTCTTTACGA
AGGAGACATGATTTTAGATCCTGACCAGCAGAAGGAGGTCGAAGATGGAA
CTTTCACTTTCTCATCCACTGGCAACAGAAACAAACTGTGGCCAAACGCT
GTCGTTCCTTACTCATTGACTTCTGATTTAGGTAAGAAATTAAAAAAACT
ATACTGTATTTTACAAACTATCACTATCTAAGAAATAAGCACTAGACCGA
TATTTTGACCAATGTTTTCAGTGGGAAGGGGTTACAGTGGGTCTGTGAGA
AGGGGGTGTAAAAGAAATTATCAAAAACAAAACAAATAACTTTCGGAGAG
GGAGTTCATTTCAAAGTTTGATTTCTAAACACTTCCCGAAATTACAAGAA
CATGGATGGTTGTAACTGGTCAAAAACCCTCGAACTCCCCCATATTATCT
CAACGAATACCCATTAATTATTAGTCCATAAAACATTCTCCCTCCTTCCC
GACTTCACCGACAACCACCAGATACTTATTTTATTTACTTCTTCTTTTTA
CTCATTGAATATAGCCCGTGATGGAAAATTCATGCGTGAATTTCAACATT
CGATCGATCAATATCACAAATATACTTGTATTCGCTTTAAGAGACGATCA
AATGAACGAGCTTATATCGGCTTTTACATGGGTGGAGGGTAAGGCTTTCT
TTACCTCTACGTTCACGCCCTTTACGCCCTTTACGCCCTTTACGGTGCTC
CAATCATTTAGAAAACGTCATTTCAATGCCGTTTTTCTCGAGTGACGTTG
AGAAATCGACCATGTCCACTAAAAAGTCCTCTATATCGTTTTCGAGAGTT
TTCGAGTAGTACAAGTAGTTTTGGGTTATAGAGACTTTGAGTTTTATTAA
ATTCCAGGTCCCAAAGGGTTTTGCTTGAGACGATAGTCTTTTACCCATAA
AAGGATTTGATTACCCCCTTCTCAAACAAGTTTTTAAATACATTCTTCTT
TCGAATGCGCTCTTCCAGAAAATGTCCATACATGGGGGGGGTGGAGGATA
TAGTGTCCGGGGGATAGTGGAAAATCTACAAACTTGCCTTATCCGGGGGT
AAAATTGCTCTGTTTGAGGGTAATTTTGAATGTCCAGGGGGTCAACTGAT
GCTTGTCCGGGGGGGTTAGACCTGCTGTCCGGGGGTAAAAAGTAATGATG
TCCGGGGGGAGAGGGTAAATTTCCAAAAAAATGCTATATCCTCTACCCCC
TCCCCAATATTTAAATACATTCTTCTTTCGAATGAGCTAAAATCAAATCC
ACTCTGGAGATAGTTGTTGCTGATCCTAAGAATAGCTTATATAACAAAAA
GTTTAGAAAGTTTGGCCCAGATTTGTCTTGATGATGCAGCAAACACTCTA
TCACATTCACGATTTGCGTATATGAATTCTGTCTTTCTATTTTAGTTGTT
CGTCACCAGTCGGTTATACCGGCGGCCGAAATAGGGTTTCGTTATCCAAA
GGATGTCATTGGAGATCAACCATCATGCATGAAATCGGTCACAGTTTAGG
TAAGTAAAAATTTACGGAATGGTCACACAGGCTAGAAATCTTCAGGAAAA
ATAAAGTTAAATACATGTACAATCAATGTTTCAACTTTTTCGTTTGTAGG
AGGAAAACGTTATTTAAGAATTTTCAAATTTCCATCCAAATTTTAAGCTT
TTGAAAAGCAAAAATATAATGTGTAAAAACTTTGTCTGACTTTGAAGTTT
TTTATCCATATTTGCCAAAAGCTTCTTGATTTATTTCCATATTCCAAAGT
CAAGACAAAGTTTAAACTTTTATATGGGTTTGATCCTTAAGTCTATGCCG
TGCAAAATTGAATGTTCTTTTCCTCGGTTAATTTGGTAATGTTCTGTAAA
AATATTTTGCATGAAAAACAGGCTGATTATTTCAAAAAGTTTAGAAACAT
TTAAAAAACATTTAAGGCACTAAAGGCAGATTTCTTAAGAAACATTGAGG
CTGCTTGGTAAAACTAGTTTCTTAAAAAATAACGTGTATGTCCTGTACCA
AGAGTAGCATAACAAGCATGCAAAGCCTCTCTCACGAGACCATATGATAC
TGTCTCAAATCGTCTGATAATTTGTAGAAAACCTAAAAGCAGAATGGGAA
TAAAATAAAACTGTTACCAATTAACAATCAAATCTTTCACCATAGGTTTC
CACCACGAGCAGTCACGTCCTGACAGAGACAACCACGTCACCATTTTATT
CCACAACGTCGCCCGGGGAACGGAACATAATTTCAAGAAACAATCATACT
CTACAACTGACTCAAAGGTAATTCATACAGGAGATAATTTTGAAAGTGAA
AATACTGTATATTGAATAAGTTGTTAAATACCTGGAACCTGAATTACCTT
ACCTTTACTAACCATCTGAGTGAAAAGACTAATATGTTGAAAATGAAACA
ACTTACTATGAAAGCCACAGTATAGAGTCTCCATAACTCGAACATCTTCA
ACTCGAATAACTATCCTTAACTCGAACATGGTTTCTCACAGCTTCAGATA
ACAAATCCATCTCAACAAGTCTACGTAACTCGAAATTTCCATAATTCAAA
CAACTTTGTCATAAAAAATGTTTCTATTATACACATAACTACAATCAGTT
CCAAAATACTCGGAACAAAAGGGAAATTCCCCAAGAAATTTTTTAACTAC
AAACAATTTGGAAGAGCTCTAAATTAGATTGGAAGGATAGAGTTTTAACT
CTGAGTTTTAACACCAGACTTAGGACCTAAGGATCTGGGGATCCAAAAGT
TCAAATATGGCCTGGTTGGGCATGAAATATAGCCTAGAAACCAATAAATC
CCTCCCAGATCGAAATATTCGATGAAATCAAGTTGAAGGCCCGAAATTGA
AATTCTCACTCGAATTTAAATTTTCGAAAAATTGTAAAGTAGCTAAAATT
GCCAATATGTTATGGCACTGATTGTAGATTAACCTTCGGGAATCAATACG
AATTTTATCTTCAAAATTTTCAATAACTTTTTATTAACAGGGCACTCCAT
ACGATTACAGATCAATGATGCATTACTCATGGGACGCATTCGGTTCCGGC
AAAATGACCATTCAGACAAAAGATCCCAGCATGCAATACGAGATCGGTAT
TGGACAAGGCGATCAGGGATTCAGTGACATTGATATCAAACAATTGAATT
TACTCTACGGATGTTGTAAGTTTTTTCAGTTATAATCTTAGACTGGCACA
CCAGTCGGGCTGGAACAGTATCAGGCGGGAAAAGTGAGTGTAGGAGTTAG
GTAACCGTAGGCAGAAATTTTGTCGGCGGCAAGGGCTGAATGTTAATCAG
CAGCCTCTCACCGACTTTTGCTCGTTCTCCTACGCAGCTCCTATTCTAGC
AGACGCTAACCGCCTTTATGTTCCCGCCCTCTGACATGATTAATTAACAG
ACTAGTTTTCTAGTCTATTATAATCTATCATCGACCATTATGTTTTTTTT
AAAACCTACCTAATAAGTTAGTACCTTACAGTTACACTTTCCAAATTCTT
TTTTCTTAAACTAATTTGACAAGGGTTATCAGCGAAAAAAAAACGAAAAC
AGCAATTAACTTCCCAAAACAAAGTTGATATCGTAGGCTCTAACCTTTTT
CACACTGCTCAATTTCAGTTGGTTACTAATTTTTTTTCGCACTGAAAAAT
CCACATTGAATACTAAGGTTGGCTACACATTCAATAGAAGCTCTCCTGAA
TTAATGATTTTCATTATTTTAGCACAAAGCAACGAAAGATTACCACCCTA
CACACCACCATCCAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035657XLOC_035657Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056620-exon-scaffold_277-1575043694:402484..402649TCONS_00056620-exon-scaffold_277-1575043694:402484..402649Clytia hemisphaericaexon
TCONS_00056620-exon-scaffold_277-1575043694:400169..400315TCONS_00056620-exon-scaffold_277-1575043694:400169..400315Clytia hemisphaericaexon
TCONS_00056620-exon-scaffold_277-1575043694:399662..399785TCONS_00056620-exon-scaffold_277-1575043694:399662..399785Clytia hemisphaericaexon
TCONS_00056620-exon-scaffold_277-1575043694:398801..398904TCONS_00056620-exon-scaffold_277-1575043694:398801..398904Clytia hemisphaericaexon
TCONS_00056620-exon-scaffold_277-1575043694:398033..398154TCONS_00056620-exon-scaffold_277-1575043694:398033..398154Clytia hemisphaericaexon
TCONS_00056620-exon-scaffold_277-1575043694:397135..397309TCONS_00056620-exon-scaffold_277-1575043694:397135..397309Clytia hemisphaericaexon
TCONS_00056620-exon-scaffold_277-1575043694:396533..396577TCONS_00056620-exon-scaffold_277-1575043694:396533..396577Clytia hemisphaericaexon
TCONS_00056620-exon-scaffold_277-1510915933:402484..402649TCONS_00056620-exon-scaffold_277-1510915933:402484..402649Clytia hemisphaericaexon
TCONS_00056620-exon-scaffold_277-1510915933:400169..400315TCONS_00056620-exon-scaffold_277-1510915933:400169..400315Clytia hemisphaericaexon
TCONS_00056620-exon-scaffold_277-1510915933:399662..399785TCONS_00056620-exon-scaffold_277-1510915933:399662..399785Clytia hemisphaericaexon
TCONS_00056620-exon-scaffold_277-1510915933:398801..398904TCONS_00056620-exon-scaffold_277-1510915933:398801..398904Clytia hemisphaericaexon
TCONS_00056620-exon-scaffold_277-1510915933:398033..398154TCONS_00056620-exon-scaffold_277-1510915933:398033..398154Clytia hemisphaericaexon
TCONS_00056620-exon-scaffold_277-1510915933:397135..397309TCONS_00056620-exon-scaffold_277-1510915933:397135..397309Clytia hemisphaericaexon
TCONS_00056620-exon-scaffold_277-1510915933:396533..396577TCONS_00056620-exon-scaffold_277-1510915933:396533..396577Clytia hemisphaericaexon
TCONS_00056620-exon-scaffold_277-1491911889:402484..402649TCONS_00056620-exon-scaffold_277-1491911889:402484..402649Clytia hemisphaericaexon
TCONS_00056620-exon-scaffold_277-1491911889:400169..400315TCONS_00056620-exon-scaffold_277-1491911889:400169..400315Clytia hemisphaericaexon
TCONS_00056620-exon-scaffold_277-1491911889:399662..399785TCONS_00056620-exon-scaffold_277-1491911889:399662..399785Clytia hemisphaericaexon
TCONS_00056620-exon-scaffold_277-1491911889:398801..398904TCONS_00056620-exon-scaffold_277-1491911889:398801..398904Clytia hemisphaericaexon
TCONS_00056620-exon-scaffold_277-1491911889:398033..398154TCONS_00056620-exon-scaffold_277-1491911889:398033..398154Clytia hemisphaericaexon
TCONS_00056620-exon-scaffold_277-1491911889:397135..397309TCONS_00056620-exon-scaffold_277-1491911889:397135..397309Clytia hemisphaericaexon
TCONS_00056620-exon-scaffold_277-1491911889:396533..396577TCONS_00056620-exon-scaffold_277-1491911889:396533..396577Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_277supercontigscaffold_277:396533..402649 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.0272108	0	0	0	0	0.915811	2.78594	0.206289	6.14636	10.9397	0	0.0466182	0	0	6.93796e-07	4.20724e-05	1.72287	1.29529e-05	1.69	10.3367	0	0	0	0	0	0.00890224
Blast
[Close]
BLAST of TCONS_00056620 vs. Swiss-Prot (Human)
Match: MEP1B (Meprin A subunit beta OS=Homo sapiens GN=MEP1B PE=1 SV=3)

HSP 1 Score: 135.576 bits (340), Expect = 2.482e-35
Identity = 100/271 (36.90%), Postives = 136/271 (50.18%), Query Frame = 1 
Query:   91 IMKLGTLLLATCLAFASGAWVPE-------ME------NEGL----YEGDMILDPDQQKEVEDGTFTFSSTGNRNKLWPNAVVPYSLTSDLARDGKFMREFQHSIDQYHKYTCIRFKRRSNERAYIGFYMGGGCSSPVG-YTGGRNRVSLSKGCHWRSTIMHEIGHSLGFHHEQSRPDRDNHVTILFHNVARGTEHNFKKQSYSTTDSKGTPYDYRSMMHYSWDAFGSG-KMTIQTKDPSMQYEIGIGQGDQGFSDIDIKQLNLLYGCSQS 846
            +  L   L    L   SG   PE       M+      NEGL    +EGD+ LD  Q +         S  G + + WP+ + PY L   L  + K +    ++ ++Y   TCI FK  + E  YI  + G GC S VG    G+  +S+   C   +T+ HE  H+LGF HEQSR DRD++V I++  +  G EHNF   S   +DS   PYDY S+MHYS  AF +G + TI T+     +E  IGQ    FSD D+ +LN LY CS S
Sbjct:    3 LWNLSWFLFLDALLVISGLATPENFDVDGGMDQDIFDINEGLGLDLFEGDIRLDRAQIRN--------SIIGEKYR-WPHTI-PYVLEDSLEMNAKGV--ILNAFERYRLKTCIDFKPWAGETNYISVFKGSGCWSSVGNRRVGKQELSIGANCDRIATVQHEFLHALGFWHEQSRSDRDDYVRIMWDRILSGREHNFNTYSDDISDSLNVPYDYTSVMHYSKTAFQNGTEPTIVTRIS--DFEDVIGQ-RMDFSDSDLLKLNQLYNCSSS 258
The following BLAST results are available for this feature:
BLAST of TCONS_00056620 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MEP1B2.482e-3536.90Meprin A subunit beta OS=Homo sapiens GN=MEP1B PE=... [more]
back to top