TCONS_00056633 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056633
Unique NameTCONS_00056633
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length261

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056633 ID=TCONS_00056633|Name=TCONS_00056633|organism=Clytia hemisphaerica|type=transcript|length=261bp
CTTATCTAAGCTCAGGCACTACGTTCCAACAAAAACTCTAGTTAACATCT
ACTTCGCTCTATTTCACTCTCATCTCCAATATGGTTGTCAGCTCTGGGGC
CTCACTGAAAAAACCACATCCAAACCTATATTTATTCTTCAAAAGAAAGC
CTTACGTCTCATGACTTTTCATTCCTTTCAATGTCCTTCTTCTCCACTCT
TTTCTGatcttaaaattcttaaaatctttGACCTAGTCAAATCTCTTAAT
ATTTCATTTGT
Run BLAST on NCBI

transcript from alignment at scaffold_277:223937..224197

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056633 ID=TCONS_00056633|Name=TCONS_00056633|organism=Clytia hemisphaerica|type=transcript|length=261bp|location=Sequence derived from alignment at scaffold_277:223937..224197 (Clytia hemisphaerica)
ACAAATGAAATATTAAGAGATTTGACTAGGTCaaagattttaagaatttt
aagatCAGAAAAGAGTGGAGAAGAAGGACATTGAAAGGAATGAAAAGTCA
TGAGACGTAAGGCTTTCTTTTGAAGAATAAATATAGGTTTGGATGTGGTT
TTTTCAGTGAGGCCCCAGAGCTGACAACCATATTGGAGATGAGAGTGAAA
TAGAGCGAAGTAGATGTTAACTAGAGTTTTTGTTGGAACGTAGTGCCTGA
GCTTAGATAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035667XLOC_035667Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056633-exon-scaffold_277-1491911889:223937..224197TCONS_00056633-exon-scaffold_277-1491911889:223937..224197Clytia hemisphaericaexon
TCONS_00056633-exon-scaffold_277-1510915933:223937..224197TCONS_00056633-exon-scaffold_277-1510915933:223937..224197Clytia hemisphaericaexon
TCONS_00056633-exon-scaffold_277-1575043694:223937..224197TCONS_00056633-exon-scaffold_277-1575043694:223937..224197Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_277supercontigscaffold_277:223937..224197 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.6966	2.52228	3.10622	5.6627	3.48809	3.44542	1.6627	2.3349	2.72453	2.69982	5.24101	2.93291	1.58784	0	1.10154	4.91226	0.866871	1.49264	5.49909	3.4285	1.87561	1.82971	1.48284	2.25858	2.08279	0	3.76445	3.78508	1.73739	2.92494
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056633 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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