TCONS_00056642 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056642
Unique NameTCONS_00056642
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length711

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056642 ID=TCONS_00056642|Name=TCONS_00056642|organism=Clytia hemisphaerica|type=transcript|length=711bp
GCTGAATATTGAATTTATGGACATGGAAACTTTCATGATAAATTTGCTGT
ATTTTAACCATTAAAGATTTAAATGTAATAGAACGGTTATTCAATTTTTA
GACAATCGCTGATGGTAGAGGAGCTCCATTGAAATGTGAAAAGTTCCCGG
AGTTAACAGTTCTTCTGGAGAATATTTTTGCAGACAATGGGCTTGAAAGC
CACCCAAGATTGATCGACGACGTTCTCTATCGTGCCACAAATAATGCTCT
AACAATGAAAAAAGCACGCGAAGTTCTTTTGTCTCTTGcaccagaaaatt
tcaaaatttgtctaTCAACTTGCTTCAATtatacgcaaaatttcaaagct
gGCACAGCCCAAGCAAAACGACACCACGAGGGCAAGAACATAAACTCATG
TATTTCTCTTCATGCTCCACCACGAATTGGAACAGAAAAATCATCGCCAA
ACTTACACTGGACCTCTTCAAATGTTAAATTGATGTTATCAACAGATGAT
AAAAACACAATCTTTGACTCCAAAGATGCCAAAGCAATCGTTTGTGCTGA
TATATCTCCCGTTCAAAGGCCATCTAAGACTTGGAAAAAGAAAGAGGGGG
TACTACTTGACCACGAATGGAACCAAAGTCGAACAAATGCAGTGACACCT
ATGGCTCATTTGTTTCTCGACGAGTCAAAAAATAAAGACGCCAATTCTCT
TCTTAGATCAg
Run BLAST on NCBI

protein sequence of TCONS_00056642-protein

>TCONS_00056642-protein ID=TCONS_00056642-protein|Name=TCONS_00056642-protein|organism=Clytia hemisphaerica|type=polypeptide|length=152bp
MKKAREVLLSLAPENFKICLSTCFNYTQNFKAGTAQAKRHHEGKNINSCI
SLHAPPRIGTEKSSPNLHWTSSNVKLMLSTDDKNTIFDSKDAKAIVCADI
SPVQRPSKTWKKKEGVLLDHEWNQSRTNAVTPMAHLFLDESKNKDANSLL
RS
Run BLAST on NCBI

transcript from alignment at scaffold_278:6009..6719

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056642 ID=TCONS_00056642|Name=TCONS_00056642|organism=Clytia hemisphaerica|type=transcript|length=711bp|location=Sequence derived from alignment at scaffold_278:6009..6719 (Clytia hemisphaerica)
cTGATCTAAGAAGAGAATTGGCGTCTTTATTTTTTGACTCGTCGAGAAAC
AAATGAGCCATAGGTGTCACTGCATTTGTTCGACTTTGGTTCCATTCGTG
GTCAAGTAGTACCCCCTCTTTCTTTTTCCAAGTCTTAGATGGCCTTTGAA
CGGGAGATATATCAGCACAAACGATTGCTTTGGCATCTTTGGAGTCAAAG
ATTGTGTTTTTATCATCTGTTGATAACATCAATTTAACATTTGAAGAGGT
CCAGTGTAAGTTTGGCGATGATTTTTCTGTTCCAATTCGTGGTGGAGCAT
GAAGAGAAATACATGAGTTTATGTTCTTGCCCTCGTGGTGTCGTTTTGCT
TGGGCTGTGCcagctttgaaattttgcgtataATTGAAGCAAGTTGAtag
acaaattttgaaattttctggtgCAAGAGACAAAAGAACTTCGCGTGCTT
TTTTCATTGTTAGAGCATTATTTGTGGCACGATAGAGAACGTCGTCGATC
AATCTTGGGTGGCTTTCAAGCCCATTGTCTGCAAAAATATTCTCCAGAAG
AACTGTTAACTCCGGGAACTTTTCACATTTCAATGGAGCTCCTCTACCAT
CAGCGATTGTCTAAAAATTGAATAACCGTTCTATTACATTTAAATCTTTA
ATGGTTAAAATACAGCAAATTTATCATGAAAGTTTCCATGTCCATAAATT
CAATATTCAGC

Coding sequence (CDS) from alignment at scaffold_278:6009..6719

>TCONS_00056642 ID=TCONS_00056642|Name=TCONS_00056642|organism=Clytia hemisphaerica|type=CDS|length=456bp|location=Sequence derived from alignment at scaffold_278:6009..6719 (Clytia hemisphaerica)
TGATCTAAGAAGAGAATTGGCGTCTTTATTTTTTGACTCGTCGAGAAACA
AATGAGCCATAGGTGTCACTGCATTTGTTCGACTTTGGTTCCATTCGTGG
TCAAGTAGTACCCCCTCTTTCTTTTTCCAAGTCTTAGATGGCCTTTGAAC
GGGAGATATATCAGCACAAACGATTGCTTTGGCATCTTTGGAGTCAAAGA
TTGTGTTTTTATCATCTGTTGATAACATCAATTTAACATTTGAAGAGGTC
CAGTGTAAGTTTGGCGATGATTTTTCTGTTCCAATTCGTGGTGGAGCATG
AAGAGAAATACATGAGTTTATGTTCTTGCCCTCGTGGTGTCGTTTTGCTT
GGGCTGTGCcagctttgaaattttgcgtataATTGAAGCAAGTTGAtaga
caaattttgaaattttctggtgCAAGAGACAAAAGAACTTCGCGTGCTTT
TTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035676XLOC_035676Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056642-proteinTCONS_00056642-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056642-exon-scaffold_278-1491911889:6009..6719TCONS_00056642-exon-scaffold_278-1491911889:6009..6719Clytia hemisphaericaexon
TCONS_00056642-exon-scaffold_278-1510915933:6009..6719TCONS_00056642-exon-scaffold_278-1510915933:6009..6719Clytia hemisphaericaexon
TCONS_00056642-exon-scaffold_278-1575043694:6009..6719TCONS_00056642-exon-scaffold_278-1575043694:6009..6719Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_278supercontigscaffold_278:6009..6719 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.141346	0.0689171	0.0800194	0.156573	0.857756	0.301249	0.181722	0.255189	0.0595546	0.36884	0.501207	0.188271	0.658032	0.341686	0.200652	0.21533	0.795807	0.380649	0.300507	0.157229	0.204991	0.199975	0.081032	0.14734	0.379391	0.677195	0.290719	0	0.156883	0.0799193
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056642 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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