|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056645 ID=TCONS_00056645|Name=TCONS_00056645|organism=Clytia hemisphaerica|type=transcript|length=2405bpRun BLAST on NCBI protein sequence of TCONS_00056645-protein >TCONS_00056645-protein ID=TCONS_00056645-protein|Name=TCONS_00056645-protein|organism=Clytia hemisphaerica|type=polypeptide|length=652bp MKDLFSVDFRDAIRKVVRSELKEKFGIKIHKEKHKGTSSSTTTCQSKYFGRun BLAST on NCBI transcript from alignment at scaffold_279:3918..12480+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00056645 ID=TCONS_00056645|Name=TCONS_00056645|organism=Clytia hemisphaerica|type=transcript|length=8563bp|location=Sequence derived from alignment at scaffold_279:3918..12480+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_279:3918..12480+ >TCONS_00056645 ID=TCONS_00056645|Name=TCONS_00056645|organism=Clytia hemisphaerica|type=CDS|length=21549bp|location=Sequence derived from alignment at scaffold_279:3918..12480+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00056645 vs. Swiss-Prot (Human)
Match: RHGBA (Rho GTPase-activating protein 11A OS=Homo sapiens GN=ARHGAP11A PE=1 SV=2) HSP 1 Score: 145.206 bits (365), Expect = 1.852e-35 Identity = 109/300 (36.33%), Postives = 150/300 (50.00%), Query Frame = 2
Query: 482 IRKVVRSELKEKFGIKIH-------KEKHKGTSSSTTTCQSKYFGVPLEDVPSKSVKDDQYFRIPIFLADSLDYLNHHVKIEGLFRKSGSVGRQKTLRELLEKDGTCCSCEFVQPHDIASLVKQFFRELPDPLLTRRYCPAFLKCISLNNTNDCIXXXXXXXXXXXDEHLRVLKYFVQFISEMANHSLESKMTLSNLAIIFAPNLTASSSSKEK---NGEKTLKDFTQIVDLLFKNAHLIGMVPDALFNKALTMNQEGGFCSS-SGDELDVATDEHPGRGRNLQRSDKKRDRSKSITGFL 1348
+R + L+ +GIK+ + +H+ ++ T K FGVP +P +V +Y IP FL D+ L H+ EGLFRKSGSV R K L+ ++ C S P DIA L+KQFFRELP+P+L A LK L T + A L LL D + VL+YF F+ ++ S E+KM SNLA+IFAPNL +S EK N EK L+ +V L A IG VPD + K M G C++ S + + E PG + KR R +S+ F+
Sbjct: 7 VRLALLQHLRAFYGIKVKGVRGQCDRRRHE---TAATEIGGKIFGVPFNALPHSAVP--EYGHIPSFLVDACTSLEDHIHTEGLFRKSGSVIRLKALKNKVDHGEGCLSS--APPCDIAGLLKQFFRELPEPILPADLHEALLKAQQLG-TEEKNKATLLLSCLLADHTVHVLRYFFNFLRNVSLRSSENKMDSSNLAVIFAPNLLQTSEGHEKMSSNTEKKLRLQAAVVQTLIDYASDIGRVPDFILEKIPAMLGIDGLCATPSLEGFEEGEYETPG--------EYKRKRRQSVGDFV 290 The following BLAST results are available for this feature:
BLAST of TCONS_00056645 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.