|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056657 ID=TCONS_00056657|Name=TCONS_00056657|organism=Clytia hemisphaerica|type=transcript|length=2712bpRun BLAST on NCBI transcript from alignment at scaffold_279:51411..68211- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00056657 ID=TCONS_00056657|Name=TCONS_00056657|organism=Clytia hemisphaerica|type=transcript|length=16801bp|location=Sequence derived from alignment at scaffold_279:51411..68211- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00056657 vs. Swiss-Prot (Human)
Match: MIPO1 (Mirror-image polydactyly gene 1 protein OS=Homo sapiens GN=MIPOL1 PE=1 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 2.969e-26 Identity = 87/304 (28.62%), Postives = 174/304 (57.24%), Query Frame = 3
Query: 516 MIEELKSARLLNQTLTEKLSQAENELDQVLISKEEMEIELEASVTARGAALVDKLYTAQKVREDAMNVRMKLLIDEKEELQKRLRKLEKDHGFDSGVDTGSGLYDELQQDQLSMNEVLGRLSSNGQSSNAIEYNGGTLIERLNQAQTTNKLKSSESFKQIKDERDQAVNQISNLKDELSEV--QKERELYETQHRKNEKNRLKAIQNQLKAVINERDEAQERSLQLEDEIEKIRLQFSLKNSLSQEESLKHQFNTTLNDFEKRLQEKERELNLAQTSYDEMVEKLSASTREKNSLVKQLEDTRE 1421
+++EL R N+ L +KL++ + E ++ E E E EA + + AALV+++Y AQK R++A+ R++L I+E++E R + +E ++ +++ +++ E+L R++ N + AI+ NG +++R+ + + ++E + +ERD A+++ L+ EL V Q + +H E N+ +A++ +L ++ R+ A ++ +LE+EI+ +R+ +SL SLSQEE+LK QFN TL+ +E+ L+ +E +++ Q +E+ +L + E+ ++ QL+ RE
Sbjct: 116 LLKELDILRTSNKKLQQKLAKEDKEQRKLKFKLELQEKETEAKIAEKTAALVEEVYFAQKERDEAVMSRLQLAIEERDEAIARAKHMEMSLKVLENINP--------EENDMTLQELLNRIN-NADTGIAIQKNGAIIVDRIYKTKECKMRITAEEMSALIEERDAALSKCKRLEQELHHVKEQNQTSANNMRHLTAENNQERALKAKLLSMQQARETAVQQYKKLEEEIQTLRVYYSLHKSLSQEENLKDQFNYTLSTYEEALKNRENIVSITQQQNEELATQLQQALTERANMELQLQHARE 410 The following BLAST results are available for this feature:
BLAST of TCONS_00056657 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.