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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056659 ID=TCONS_00056659|Name=TCONS_00056659|organism=Clytia hemisphaerica|type=transcript|length=1695bp
gaaagattttttgatcttaggagatcatcactgtgaagaaatttcattaa
aatatttattcaatataaagttatgatacaaagttaataagtgattgacc
ccaaaaaaaacagcaaaaaactgcagaaaacagcgtttttagacccatcg
tgaatagactttagcttCAAACTATTTCACACTCAAGCCAATCTTTGTTG
ATTTAAAGCAGAAAATAGAGtttgatttaaatttaaaatttctttctata
ttgatttgatatttatttGAACAAAAATTACGCCAGGTAATTTGAACAAC
TATATCAAACGGAATCTATGTACGGTCCCTTTGTTGTTAGAATATaacta
gactagcaaactagtctgtaaattaatcatgtcagagggcgggaacataa
aggtgACGGGCGTTTGCTAAAATTAGAGcagcgtaggagaacgagcaaaa
gttggtgagaggctgctgattaacagggctttcagcccttgccgccgaca
aaatttcttcctacgcttacctaactcctacgctcacttttctcGCGTGA
TACCGTttcagcccgactggcgtgccagtctagaATCTAACAATCTGTAT
GGCAGCCCTCTTCAAAATCTCTCCGATAAGTGGGGATGAGAATGTCCGTC
GAAATCCCAAAGGGGATAGAAAATTACTCTTCCCAGCTCTAAAAATCCAG
CGGGGATggttttttccattgaattttaaatgaggataaaaacaaagtta
attttccagtgggccATTTAGTGTATTTTACCCACCGGGaagattttata
attttcagCGAGACGAGGTCATCCCACTAGTTGATCTGAATTTACAATAG
GCGCGAAGAGTTATGCTAAGCAAAGAATTCGTGCAATTTTTTCCAAGCGT
GCATACATACAAGTCACAAGAAAACTTAGAATACAAAAAATCTCTGATCC
GATCACCATATAGAAACTATAGCCAAAATCTTCATCTACAATACCAGTAT
TTGTATGTTGACCTGAACTCAACTCCCATCTTCCATGAGTATAAAGTATG
AGAACACACAGCGTGAAAGTTGCGGATAAGATCTGTGTCAGGAGAACCCA
TAAGCCATCCAGCGTATCTTTAAATGACATTGCAAGCGTAAAAACAGTTG
CCAGGAAAGTCATGGTTGTTACTACAAACAGGAGCACACGACATAGTTTC
AAGCAATCCTCTCTCACCAAATGTTTTCGATCTTGCAACTGATTCAAATA
TGTCAAACTTTCGCCGCAGATTTTATTTTCTCCAGTTTTCAAGTCAACAG
TACAATATTTCCAGATTCCAAAATATGTAACTTCAGGGTTTCTATTTTCA
TCAATGGCTTTGAGGTGTGACCAATGAATATCTGTGGACGCATACATTAA
GAATAGAAACGAACAAACGGATAAAAGGAAAGGTAGATGAGTTGATTTTG
TACGTGAATGtgattttgtaatttcattttttgatgattttttcttgGCG
CTTGAAACAGTCATATCTGGTATTGTATAGGTTGAAGTTTAATCTCTTGC
TATTTCCACTTCCAGAAAGGCTTTCATTTGATTTTCCTCCTGTTTCTAGT
CCTCTTTTATATTGGAGCAATAAAAATCTTGGAAACTGCACATTGTTGCA
GTTAATATATATATATCCATTATTGAATCCTGTGGTAATTATCTG Run BLAST on NCBI protein sequence of TCONS_00056659-protein >TCONS_00056659-protein ID=TCONS_00056659-protein|Name=TCONS_00056659-protein|organism=Clytia hemisphaerica|type=polypeptide|length=217bp
MTVSSAKKKSSKNEITKSHSRTKSTHLPFLLSVCSFLFLMYASTDIHWSH
LKAIDENRNPEVTYFGIWKYCTVDLKTGENKICGESLTYLNQLQDRKHLV
REDCLKLCRVLLFVVTTMTFLATVFTLAMSFKDTLDGLWVLLTQILSATF
TLCVLILYTHGRWELSSGQHTNTGIVDEDFGYSFYMVIGSEIFCILSFLV
TCMYARLEKIARILCLA Run BLAST on NCBI transcript from alignment at scaffold_279:25075..26769 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056659 ID=TCONS_00056659|Name=TCONS_00056659|organism=Clytia hemisphaerica|type=transcript|length=1695bp|location=Sequence derived from alignment at scaffold_279:25075..26769 (Clytia hemisphaerica)
CAGATAATTACCACAGGATTCAATAATGGATATATATATATTAACTGCAA
CAATGTGCAGTTTCCAAGATTTTTATTGCTCCAATATAAAAGAGGACTAG
AAACAGGAGGAAAATCAAATGAAAGCCTTTCTGGAAGTGGAAATAGCAAG
AGATTAAACTTCAACCTATACAATACCAGATATGACTGTTTCAAGCGCca
agaaaaaatcatcaaaaaatgaaattacaaaatcaCATTCACGTACAAAA
TCAACTCATCTACCTTTCCTTTTATCCGTTTGTTCGTTTCTATTCTTAAT
GTATGCGTCCACAGATATTCATTGGTCACACCTCAAAGCCATTGATGAAA
ATAGAAACCCTGAAGTTACATATTTTGGAATCTGGAAATATTGTACTGTT
GACTTGAAAACTGGAGAAAATAAAATCTGCGGCGAAAGTTTGACATATTT
GAATCAGTTGCAAGATCGAAAACATTTGGTGAGAGAGGATTGCTTGAAAC
TATGTCGTGTGCTCCTGTTTGTAGTAACAACCATGACTTTCCTGGCAACT
GTTTTTACGCTTGCAATGTCATTTAAAGATACGCTGGATGGCTTATGGGT
TCTCCTGACACAGATCTTATCCGCAACTTTCACGCTGTGTGTTCTCATAC
TTTATACTCATGGAAGATGGGAGTTGAGTTCAGGTCAACATACAAATACT
GGTATTGTAGATGAAGATTTTGGCTATAGTTTCTATATGGTGATCGGATC
AGAGATTTTTTGTATTCTAAGTTTTCTTGTGACTTGTATGTATGCACGCT
TGGAAAAAATTGCACGAATTCTTTGCTTAGCATAACTCTTCGCGCCTATT
GTAAATTCAGATCAACTAGTGGGATGACCTCGTCTCGctgaaaattataa
aatcttCCCGGTGGGTAAAATACACTAAATggcccactggaaaattaact
ttgtttttatcctcatttaaaattcaatggaaaaaaccATCCCCGCTGGA
TTTTTAGAGCTGGGAAGAGTAATTTTCTATCCCCTTTGGGATTTCGACGG
ACATTCTCATCCCCACTTATCGGAGAGATTTTGAAGAGGGCTGCCATACA
GATTGTTAGATtctagactggcacgccagtcgggctgaaACGGTATCACG
Cgagaaaagtgagcgtaggagttaggtaagcgtaggaagaaattttgtcg
gcggcaagggctgaaagccctgttaatcagcagcctctcaccaacttttg
ctcgttctcctacgctgCTCTAATTTTAGCAAACGCCCGTcacctttatg
ttcccgccctctgacatgattaatttacagactagtttgctagtctagtt
ATATTCTAACAACAAAGGGACCGTACATAGATTCCGTTTGATATAGTTGT
TCAAATTACCTGGCGTAATTTTTGTTCaaataaatatcaaatcaatatag
aaagaaattttaaatttaaatcaaaCTCTATTTTCTGCTTTAAATCAACA
AAGATTGGCTTGAGTGTGAAATAGTTTGaagctaaagtctattcacgatg
ggtctaaaaacgctgttttctgcagttttttgctgttttttttggggtca
atcacttattaactttgtatcataactttatattgaataaatattttaat
gaaatttcttcacagtgatgatctcctaagatcaaaaaatctttc Coding sequence (CDS) from alignment at scaffold_279:25075..26769 >TCONS_00056659 ID=TCONS_00056659|Name=TCONS_00056659|organism=Clytia hemisphaerica|type=CDS|length=654bp|location=Sequence derived from alignment at scaffold_279:25075..26769 (Clytia hemisphaerica)
ATGACTGTTTCAAGCGCcaagaaaaaatcatcaaaaaatgaaattacaaa
atcaCATTCACGTACAAAATCAACTCATCTACCTTTCCTTTTATCCGTTT
GTTCGTTTCTATTCTTAATGTATGCGTCCACAGATATTCATTGGTCACAC
CTCAAAGCCATTGATGAAAATAGAAACCCTGAAGTTACATATTTTGGAAT
CTGGAAATATTGTACTGTTGACTTGAAAACTGGAGAAAATAAAATCTGCG
GCGAAAGTTTGACATATTTGAATCAGTTGCAAGATCGAAAACATTTGGTG
AGAGAGGATTGCTTGAAACTATGTCGTGTGCTCCTGTTTGTAGTAACAAC
CATGACTTTCCTGGCAACTGTTTTTACGCTTGCAATGTCATTTAAAGATA
CGCTGGATGGCTTATGGGTTCTCCTGACACAGATCTTATCCGCAACTTTC
ACGCTGTGTGTTCTCATACTTTATACTCATGGAAGATGGGAGTTGAGTTC
AGGTCAACATACAAATACTGGTATTGTAGATGAAGATTTTGGCTATAGTT
TCTATATGGTGATCGGATCAGAGATTTTTTGTATTCTAAGTTTTCTTGTG
ACTTGTATGTATGCACGCTTGGAAAAAATTGCACGAATTCTTTGCTTAGC
ATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056659-exon-scaffold_279-1491911889:25075..26769 | TCONS_00056659-exon-scaffold_279-1491911889:25075..26769 | Clytia hemisphaerica | exon |
| TCONS_00056659-exon-scaffold_279-1510915933:25075..26769 | TCONS_00056659-exon-scaffold_279-1510915933:25075..26769 | Clytia hemisphaerica | exon |
| TCONS_00056659-exon-scaffold_279-1575043694:25075..26769 | TCONS_00056659-exon-scaffold_279-1575043694:25075..26769 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_279 | supercontig | scaffold_279:25075..26769 . |
Blast
The following BLAST results are available for this feature:
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