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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056661 ID=TCONS_00056661|Name=TCONS_00056661|organism=Clytia hemisphaerica|type=transcript|length=2156bp
aggtACTCTTAATAtagaaaaaggagaaaaaacaaTGCTGTTTTGAAAGG
ATGTAAAACtgtaaaaaacaacaaaaaaacagaTATAAAGAAGTATTCGA
AACTTGAGACTTGATCAGAATCTTTGGAATCGTGGAAGGGattggacaaa
aatacatatgaccgatgaagaaaaaaattgagtgAAGAACTGATAACACT
TGAAGATATCTGGATAAAGATTTGTCGATAACTCTCTTTACATTACAACA
ACACGAAAGTCACTTTTTTGATCACTTAAACTGATAACAAGTTCCAAACA
ACTTCTTTGCTCAGAATGATCCATTAAAGTAAGTAGTGGTATTCAAGAGC
AGATATCATGACTGGTAGTGTACAAGATATTTACGAATGGTCCACTCTGG
ACACTGTTGTGGTCGTGTTATGCATTTTAGTAATCATCTTACACACATTC
GGTATATTTGTCATCNGTCGTGTTATGCATTTTAGTAATCATCTTACACA
CATTCGGTATGTTTGTCATAAATAAAACATTGACACGTGAACAACTAAAG
GAGAATAGCGAGCTCATTAGCGTGTCTTTATCGACCAACATGATAGCCAT
TGCGTATCTCCTCTACGTAACAATTCATTCCGTAAAACAGGGGATACGTC
AGTTTCTTGCTGCTCCCGTTTACGCTATATTCGTCCCGTTTTACGGCTCC
TTGATTATACTAACATTACAACGCTTCACCGCCGTATACTATCATTTGCG
ATACAAATCTTGCTTCATTTATCGACGGAGATTTCAGCTGCTCGTCTCGA
TCTACATCTTTAGTGGCGTCTTTCTCTGCATGACCATGATTCTCCATATC
TTCGTGACCAAAATCGCCTTCTACATCGAAAAAACGGTGACGACAATCGG
TATCCTAGCAACGAATCTCATCTCGATGTTTGTTTACACTTATATTTTTA
TTAAGTACAAGAAAGCGACACAAGAAGAGAAAAAGAACTTCTACCGCAAA
CGAAAAGCTGCTTTCTTTCTTCCCTTCACGATTTACATCACATTACTTCT
GTTTGGTACCTTACCTTACATGTTTCACAGCTATCTAAAACAATTCCAAT
GGGTGGCTGTTTTCTTTGGAATGGATGGCTTCAGTAATTCAATTATCTAT
CTATTCCTACATCCAATTCTTTTCCAGAAGTTCAAAGCATGTTGGAGGGA
GCGATTCCCTTCGCATCATAATGAAAGCAATAGCTCAGAACAGAACACAC
ATTCGACAGGTGCTCAGAAAGCACTTAAAACACCTGATAACAACGATGTA
TCCATCCTTCAAGGAACAAGCCGTGACTTGCAAATAAACGATCAATCTCC
AGATGACACTATTACAGACTTGAATCATAAAGATGATTTAGTAATTTCAA
ATGTTTACAGCATTTATAAAGAGATAGGCCCAGAACGTATAAACTCCACA
TCACCGCCTTTACCAGACGAGACAATTTTCTATGAGACGGCGAGCAGCCC
TTTAAGCTTAAACCAGCCGACTGGTGAGCTCGTGATGAAAAActgtaaaa
tacaacttaaCATTTAATACCTATACCGTGATAATTGAGGAGTTTGTACT
GAAAAGTGTGGANAACTTAACATTTAATACCTATACCGTGATAATTGACG
AGTTTGTACTGAAAAGTGTGGTTACGTAAACTCACAGCTCACAGACAGCT
CAGATTAAACTTTGGAGAAATTATCCCCGAGAAATTTCCCTTTCGTAAAT
AAGTGCCCTTAGAAGCttacagaaattttcaaacgaaggACAGGAATTTT
TAAAAGGAGCTATGACCAATAGCCAAATGTTATGGTAGAAAGTCCCAACG
AAATCTATTCGAAAGCTTGGCggttaagtggataaatttttgcgtggatt
aattttcgcggttttcgcgaattttggtcattttcgcgaaatttagtcca
cgcgaaaattttcaaggcctttgattcgcgaaaattagtccacgcgaaat
tatttggaattttaaaATCGCGAAAAGAAAAGTTCAGATAACATGTTACA
ATCAAAACATATTACGAGTTCAACTCTTCATTTCAATTATAAACTCTAGT
AACCTCCTAAAAGTactttctttgaagttttttgaaagcttttgagtGAC
TTGGTC Run BLAST on NCBI protein sequence of TCONS_00056661-protein >TCONS_00056661-protein ID=TCONS_00056661-protein|Name=TCONS_00056661-protein|organism=Clytia hemisphaerica|type=polypeptide|length=352bp
MFVINKTLTREQLKENSELISVSLSTNMIAIAYLLYVTIHSVKQGIRQFL
AAPVYAIFVPFYGSLIILTLQRFTAVYYHLRYKSCFIYRRRFQLLVSIYI
FSGVFLCMTMILHIFVTKIAFYIEKTVTTIGILATNLISMFVYTYIFIKY
KKATQEEKKNFYRKRKAAFFLPFTIYITLLLFGTLPYMFHSYLKQFQWVA
VFFGMDGFSNSIIYLFLHPILFQKFKACWRERFPSHHNESNSSEQNTHST
GAQKALKTPDNNDVSILQGTSRDLQINDQSPDDTITDLNHKDDLVISNVY
SIYKEIGPERINSTSPPLPDETIFYETASSPLSLNQPTGELVMKNCKIQL
NI Run BLAST on NCBI transcript from alignment at scaffold_279:113777..115932 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056661 ID=TCONS_00056661|Name=TCONS_00056661|organism=Clytia hemisphaerica|type=transcript|length=2156bp|location=Sequence derived from alignment at scaffold_279:113777..115932 (Clytia hemisphaerica)
GACCAAGTCactcaaaagctttcaaaaaacttcaaagaaagtACTTTTAG
GAGGTTACTAGAGTTTATAATTGAAATGAAGAGTTGAACTCGTAATATGT
TTTGATTGTAACATGTTATCTGAACTTTTCTTTTCGCGATtttaaaattc
caaataatttcgcgtggactaattttcgcgaatcaaaggccttgaaaatt
ttcgcgtggactaaatttcgcgaaaatgaccaaaattcgcgaaaaccgcg
aaaattaatccacgcaaaaatttatccacttaaccGCCAAGCTTTCGAAT
AGATTTCGTTGGGACTTTCTACCATAACATTTGGCTATTGGTCATAGCTC
CTTTTAAAAATTCCTGTccttcgtttgaaaatttctgtaaGCTTCTAAGG
GCACTTATTTACGAAAGGGAAATTTCTCGGGGATAATTTCTCCAAAGTTT
AATCTGAGCTGTCTGTGAGCTGTGAGTTTACGTAACCACACTTTTCAGTA
CAAACTCGTCAATTATCACGGTATAGGTATTAAATGTTAAGTTNTCCACA
CTTTTCAGTACAAACTCCTCAATTATCACGGTATAGGTATTAAATGttaa
gttgtattttacagTTTTTCATCACGAGCTCACCAGTCGGCTGGTTTAAG
CTTAAAGGGCTGCTCGCCGTCTCATAGAAAATTGTCTCGTCTGGTAAAGG
CGGTGATGTGGAGTTTATACGTTCTGGGCCTATCTCTTTATAAATGCTGT
AAACATTTGAAATTACTAAATCATCTTTATGATTCAAGTCTGTAATAGTG
TCATCTGGAGATTGATCGTTTATTTGCAAGTCACGGCTTGTTCCTTGAAG
GATGGATACATCGTTGTTATCAGGTGTTTTAAGTGCTTTCTGAGCACCTG
TCGAATGTGTGTTCTGTTCTGAGCTATTGCTTTCATTATGATGCGAAGGG
AATCGCTCCCTCCAACATGCTTTGAACTTCTGGAAAAGAATTGGATGTAG
GAATAGATAGATAATTGAATTACTGAAGCCATCCATTCCAAAGAAAACAG
CCACCCATTGGAATTGTTTTAGATAGCTGTGAAACATGTAAGGTAAGGTA
CCAAACAGAAGTAATGTGATGTAAATCGTGAAGGGAAGAAAGAAAGCAGC
TTTTCGTTTGCGGTAGAAGTTCTTTTTCTCTTCTTGTGTCGCTTTCTTGT
ACTTAATAAAAATATAAGTGTAAACAAACATCGAGATGAGATTCGTTGCT
AGGATACCGATTGTCGTCACCGTTTTTTCGATGTAGAAGGCGATTTTGGT
CACGAAGATATGGAGAATCATGGTCATGCAGAGAAAGACGCCACTAAAGA
TGTAGATCGAGACGAGCAGCTGAAATCTCCGTCGATAAATGAAGCAAGAT
TTGTATCGCAAATGATAGTATACGGCGGTGAAGCGTTGTAATGTTAGTAT
AATCAAGGAGCCGTAAAACGGGACGAATATAGCGTAAACGGGAGCAGCAA
GAAACTGACGTATCCCCTGTTTTACGGAATGAATTGTTACGTAGAGGAGA
TACGCAATGGCTATCATGTTGGTCGATAAAGACACGCTAATGAGCTCGCT
ATTCTCCTTTAGTTGTTCACGTGTCAATGTTTTATTTATGACAAACATAC
CGAATGTGTGTAAGATGATTACTAAAATGCATAACACGACNGATGACAAA
TATACCGAATGTGTGTAAGATGATTACTAAAATGCATAACACGACCACAA
CAGTGTCCAGAGTGGACCATTCGTAAATATCTTGTACACTACCAGTCATG
ATATCTGCTCTTGAATACCACTACTTACTTTAATGGATCATTCTGAGCAA
AGAAGTTGTTTGGAACTTGTTATCAGTTTAAGTGATCAAAAAAGTGACTT
TCGTGTTGTTGTAATGTAAAGAGAGTTATCGACAAATCTTTATCCAGATA
TCTTCAAGTGTTATCAGTTCTTcactcaatttttttcttcatcggtcata
tgtatttttgtccaatCCCTTCCACGATTCCAAAGATTCTGATCAAGTCT
CAAGTTTCGAATACTTCTTTATAtctgtttttttgttgttttttacaGTT
TTACATCCTTTCAAAACAGCAttgttttttctcctttttctaTATTAAGA
GTacct Coding sequence (CDS) from alignment at scaffold_279:113777..115932 >TCONS_00056661 ID=TCONS_00056661|Name=TCONS_00056661|organism=Clytia hemisphaerica|type=CDS|length=1059bp|location=Sequence derived from alignment at scaffold_279:113777..115932 (Clytia hemisphaerica)
TTAAATGttaagttgtattttacagTTTTTCATCACGAGCTCACCAGTCG
GCTGGTTTAAGCTTAAAGGGCTGCTCGCCGTCTCATAGAAAATTGTCTCG
TCTGGTAAAGGCGGTGATGTGGAGTTTATACGTTCTGGGCCTATCTCTTT
ATAAATGCTGTAAACATTTGAAATTACTAAATCATCTTTATGATTCAAGT
CTGTAATAGTGTCATCTGGAGATTGATCGTTTATTTGCAAGTCACGGCTT
GTTCCTTGAAGGATGGATACATCGTTGTTATCAGGTGTTTTAAGTGCTTT
CTGAGCACCTGTCGAATGTGTGTTCTGTTCTGAGCTATTGCTTTCATTAT
GATGCGAAGGGAATCGCTCCCTCCAACATGCTTTGAACTTCTGGAAAAGA
ATTGGATGTAGGAATAGATAGATAATTGAATTACTGAAGCCATCCATTCC
AAAGAAAACAGCCACCCATTGGAATTGTTTTAGATAGCTGTGAAACATGT
AAGGTAAGGTACCAAACAGAAGTAATGTGATGTAAATCGTGAAGGGAAGA
AAGAAAGCAGCTTTTCGTTTGCGGTAGAAGTTCTTTTTCTCTTCTTGTGT
CGCTTTCTTGTACTTAATAAAAATATAAGTGTAAACAAACATCGAGATGA
GATTCGTTGCTAGGATACCGATTGTCGTCACCGTTTTTTCGATGTAGAAG
GCGATTTTGGTCACGAAGATATGGAGAATCATGGTCATGCAGAGAAAGAC
GCCACTAAAGATGTAGATCGAGACGAGCAGCTGAAATCTCCGTCGATAAA
TGAAGCAAGATTTGTATCGCAAATGATAGTATACGGCGGTGAAGCGTTGT
AATGTTAGTATAATCAAGGAGCCGTAAAACGGGACGAATATAGCGTAAAC
GGGAGCAGCAAGAAACTGACGTATCCCCTGTTTTACGGAATGAATTGTTA
CGTAGAGGAGATACGCAATGGCTATCATGTTGGTCGATAAAGACACGCTA
ATGAGCTCGCTATTCTCCTTTAGTTGTTCACGTGTCAATGTTTTATTTAT
GACAAACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056661-exon-scaffold_279-1491911889:113777..115932 | TCONS_00056661-exon-scaffold_279-1491911889:113777..115932 | Clytia hemisphaerica | exon |
| TCONS_00056661-exon-scaffold_279-1510915933:113777..115932 | TCONS_00056661-exon-scaffold_279-1510915933:113777..115932 | Clytia hemisphaerica | exon |
| TCONS_00056661-exon-scaffold_279-1575043694:113777..115932 | TCONS_00056661-exon-scaffold_279-1575043694:113777..115932 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_279 | supercontig | scaffold_279:113777..115932 . |
Blast
The following BLAST results are available for this feature:
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