TCONS_00056662 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056662
Unique NameTCONS_00056662
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length740

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056662 ID=TCONS_00056662|Name=TCONS_00056662|organism=Clytia hemisphaerica|type=transcript|length=740bp
GTCGGTCCCGCCcgacattaaaaaaattggcaattttTGGCCGGGGTTTA
AGCTTAAAACTTCTGGAGGACAATTTTTCTAATTATTATTTCCCTATACG
AGAAAATATGCAGAATCGAGAATGCGTTTCATTTTTCTTAGGTGTCCTCG
ATCTATCAGCCATGATTTATTTCCAagttgaaatttcaaacttaccaCCA
CGTATGATCGAAGGCTGGTCAAGCACTGTAGGATGGCTTTCCACAGGCAT
GATCGCCCTGTGTATCATCCTATCCGCTATCCTGCATATCCGGGATCCAT
TATTACGCAAGGAAGATCCGGTACGACCGGAAAGTCCTAGCTCGACATTG
AATTATCCTTTAGAGAGGTATTTCTATGGGTCATCAAGACAAAACTCGAT
GAGTAATTTCAACCAGCGTTGGTTTGATGAACGGTATAGTACAACTGCAT
CGAATGGTTACCTAGCAACAGGTGTTACTGGATTGTCCGGAATGGTGAAT
GAAGGATATACAGTGGAAGTGAAAAACAGACCATGATTTGAACTGTGCAC
AAAGGGttactttttcacttttcaccTTATGTGTCGCAAAATAACACCAG
AcacaaaaaaacctttttatcATAAACATCATCAAATTCGAAGGTGGATC
TGGTGAGAAAGTTCGAAGCTAAAGAAgtataaattatacaaatttaTGTT
CATAAATcatgtaaaaatcaaaattttttttaaattattg
Run BLAST on NCBI

protein sequence of TCONS_00056662-protein

>TCONS_00056662-protein ID=TCONS_00056662-protein|Name=TCONS_00056662-protein|organism=Clytia hemisphaerica|type=polypeptide|length=177bp
RSRPTLKKLAIFGRGLSLKLLEDNFSNYYFPIRENMQNRECVSFFLGVLD
LSAMIYFQVEISNLPPRMIEGWSSTVGWLSTGMIALCIILSAILHIRDPL
LRKEDPVRPESPSSTLNYPLERYFYGSSRQNSMSNFNQRWFDERYSTTAS
NGYLATGVTGLSGMVNEGYTVEVKNRP
Run BLAST on NCBI

transcript from alignment at scaffold_279:143457..144196

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056662 ID=TCONS_00056662|Name=TCONS_00056662|organism=Clytia hemisphaerica|type=transcript|length=740bp|location=Sequence derived from alignment at scaffold_279:143457..144196 (Clytia hemisphaerica)
caataatttaaaaaaaattttgatttttacatgATTTATGAACAtaaatt
tgtataatttatacTTCTTTAGCTTCGAACTTTCTCACCAGATCCACCTT
CGAATTTGATGATGTTTATgataaaaaggtttttttgtgTCTGGTGTTAT
TTTGCGACACATAAggtgaaaagtgaaaaagtaaCCCTTTGTGCACAGTT
CAAATCATGGTCTGTTTTTCACTTCCACTGTATATCCTTCATTCACCATT
CCGGACAATCCAGTAACACCTGTTGCTAGGTAACCATTCGATGCAGTTGT
ACTATACCGTTCATCAAACCAACGCTGGTTGAAATTACTCATCGAGTTTT
GTCTTGATGACCCATAGAAATACCTCTCTAAAGGATAATTCAATGTCGAG
CTAGGACTTTCCGGTCGTACCGGATCTTCCTTGCGTAATAATGGATCCCG
GATATGCAGGATAGCGGATAGGATGATACACAGGGCGATCATGCCTGTGG
AAAGCCATCCTACAGTGCTTGACCAGCCTTCGATCATACGTGGtggtaag
tttgaaatttcaactTGGAAATAAATCATGGCTGATAGATCGAGGACACC
TAAGAAAAATGAAACGCATTCTCGATTCTGCATATTTTCTCGTATAGGGA
AATAATAATTAGAAAAATTGTCCTCCAGAAGTTTTAAGCTTAAACCCCGG
CCAaaaattgccaatttttttaatgtcgGGCGGGACCGAC

Coding sequence (CDS) from alignment at scaffold_279:143457..144196

>TCONS_00056662 ID=TCONS_00056662|Name=TCONS_00056662|organism=Clytia hemisphaerica|type=CDS|length=534bp|location=Sequence derived from alignment at scaffold_279:143457..144196 (Clytia hemisphaerica)
TCATGGTCTGTTTTTCACTTCCACTGTATATCCTTCATTCACCATTCCGG
ACAATCCAGTAACACCTGTTGCTAGGTAACCATTCGATGCAGTTGTACTA
TACCGTTCATCAAACCAACGCTGGTTGAAATTACTCATCGAGTTTTGTCT
TGATGACCCATAGAAATACCTCTCTAAAGGATAATTCAATGTCGAGCTAG
GACTTTCCGGTCGTACCGGATCTTCCTTGCGTAATAATGGATCCCGGATA
TGCAGGATAGCGGATAGGATGATACACAGGGCGATCATGCCTGTGGAAAG
CCATCCTACAGTGCTTGACCAGCCTTCGATCATACGTGGtggtaagtttg
aaatttcaactTGGAAATAAATCATGGCTGATAGATCGAGGACACCTAAG
AAAAATGAAACGCATTCTCGATTCTGCATATTTTCTCGTATAGGGAAATA
ATAATTAGAAAAATTGTCCTCCAGAAGTTTTAAGCTTAAACCCCGGCCAa
aaattgccaatttttttaatgtcgGGCGGGACCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035686XLOC_035686Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056662-proteinTCONS_00056662-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056662-exon-scaffold_279-1491911889:143457..144196TCONS_00056662-exon-scaffold_279-1491911889:143457..144196Clytia hemisphaericaexon
TCONS_00056662-exon-scaffold_279-1510915933:143457..144196TCONS_00056662-exon-scaffold_279-1510915933:143457..144196Clytia hemisphaericaexon
TCONS_00056662-exon-scaffold_279-1575043694:143457..144196TCONS_00056662-exon-scaffold_279-1575043694:143457..144196Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_279supercontigscaffold_279:143457..144196 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.400878	0.586379	0	0.222033	0	0	0	0	0.28151	0.209218	0.609215	0.0444971	2.79942	4.52235	0	0.244284	0	0.205634	7.59954	8.24966	0.258395	0	0.153213	0	0	0.128042	0.091614	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056662 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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