TCONS_00056668 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056668
Unique NameTCONS_00056668
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length439

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056668 ID=TCONS_00056668|Name=TCONS_00056668|organism=Clytia hemisphaerica|type=transcript|length=439bp
GGACGTACAAGAAGACTTTGATGACAAACAATTTGATCAAACGAAGAAAT
CACTCAACGTATTCACAGATTCCAACGGCATCCTTCGTTGTCATGGTCGT
ATTGGCAACGCTCCTGTTCCGTTCGATACAAAGTATCCAATCCTACTTCC
AAGACGTCATCCGTTCACACTACTGGTCGTTCGTGACAGCCACGTTAGCG
TTGGTCACAACAAGACGAAAGAAACTTTGAATCACTTACGTCAATCGTAC
TGGATTCCAAAAGGACGTTCACTCGTAAGAACTGTTATTAACAAATGTCA
ACTTCGTAAAATCTTTGAAGGACAAAAGTGTCGGTACCCTGATGTCCCTA
TTCTTCCAAAAGAACGTCTTGATAAAAACTTTGCTTTTACAAATATTGGC
GTGGACTACGCTGGTCCCGTCCATATTCGAAACACGTNN
Run BLAST on NCBI

protein sequence of TCONS_00056668-protein

>TCONS_00056668-protein ID=TCONS_00056668-protein|Name=TCONS_00056668-protein|organism=Clytia hemisphaerica|type=polypeptide|length=146bp
DVQEDFDDKQFDQTKKSLNVFTDSNGILRCHGRIGNAPVPFDTKYPILLP
RRHPFTLLVVRDSHVSVGHNKTKETLNHLRQSYWIPKGRSLVRTVINKCQ
LRKIFEGQKCRYPDVPILPKERLDKNFAFTNIGVDYAGPVHIRNTX
Run BLAST on NCBI

transcript from alignment at scaffold_280:31768..32206

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056668 ID=TCONS_00056668|Name=TCONS_00056668|organism=Clytia hemisphaerica|type=transcript|length=439bp|location=Sequence derived from alignment at scaffold_280:31768..32206 (Clytia hemisphaerica)
NNACGTGTTTCGAATATGGACGGGACCAGCGTAGTCCACGCCAATATTTG TAAAAGCAAAGTTTTTATCAAGACGTTCTTTTGGAAGAATAGGGACATCA GGGTACCGACACTTTTGTCCTTCAAAGATTTTACGAAGTTGACATTTGTT AATAACAGTTCTTACGAGTGAACGTCCTTTTGGAATCCAGTACGATTGAC GTAAGTGATTCAAAGTTTCTTTCGTCTTGTTGTGACCAACGCTAACGTGG CTGTCACGAACGACCAGTAGTGTGAACGGATGACGTCTTGGAAGTAGGAT TGGATACTTTGTATCGAACGGAACAGGAGCGTTGCCAATACGACCATGAC AACGAAGGATGCCGTTGGAATCTGTGAATACGTTGAGTGATTTCTTCGTT TGATCAAATTGTTTGTCATCAAAGTCTTCTTGTACGTCC

Coding sequence (CDS) from alignment at scaffold_280:31768..32206

>TCONS_00056668 ID=TCONS_00056668|Name=TCONS_00056668|organism=Clytia hemisphaerica|type=CDS|length=438bp|location=Sequence derived from alignment at scaffold_280:31768..32206 (Clytia hemisphaerica)
NNACGTGTTTCGAATATGGACGGGACCAGCGTAGTCCACGCCAATATTTG
TAAAAGCAAAGTTTTTATCAAGACGTTCTTTTGGAAGAATAGGGACATCA
GGGTACCGACACTTTTGTCCTTCAAAGATTTTACGAAGTTGACATTTGTT
AATAACAGTTCTTACGAGTGAACGTCCTTTTGGAATCCAGTACGATTGAC
GTAAGTGATTCAAAGTTTCTTTCGTCTTGTTGTGACCAACGCTAACGTGG
CTGTCACGAACGACCAGTAGTGTGAACGGATGACGTCTTGGAAGTAGGAT
TGGATACTTTGTATCGAACGGAACAGGAGCGTTGCCAATACGACCATGAC
AACGAAGGATGCCGTTGGAATCTGTGAATACGTTGAGTGATTTCTTCGTT
TGATCAAATTGTTTGTCATCAAAGTCTTCTTGTACGTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035692XLOC_035692Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056668-exon-scaffold_280-1491911889:31768..32206TCONS_00056668-exon-scaffold_280-1491911889:31768..32206Clytia hemisphaericaexon
TCONS_00056668-exon-scaffold_280-1510915933:31768..32206TCONS_00056668-exon-scaffold_280-1510915933:31768..32206Clytia hemisphaericaexon
TCONS_00056668-exon-scaffold_280-1575043694:31768..32206TCONS_00056668-exon-scaffold_280-1575043694:31768..32206Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056668-proteinTCONS_00056668-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_280supercontigscaffold_280:31768..32206 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

min expression (0.961924 tpm) - - (16.8392 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.07486 4.30286 0.961924 1.94616 4.25615 2.02176 4.0457 5.01197 3.88198 4.80596 8.01867 4.72389 9.19635 10.0938 11.5902 16.8392 9.92733 13.5001 4.83316 4.14278 4.93953 4.41132 3.2186 6.15875 7.068 7.02035 1.36751 1.98729 2.16864 2.98917
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056668 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
50100150200250300350400Sequence
Match NameE-valueIdentityDescription
back to top