TCONS_00056671 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056671
Unique NameTCONS_00056671
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length984

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056671 ID=TCONS_00056671|Name=TCONS_00056671|organism=Clytia hemisphaerica|type=transcript|length=984bp
GTTTGTAGTAGTTTGggaagtctttagagcttgtgaaagagtttctATGc
acTATGGGCTACAATCAGATGATGAAGGGACCAAAACATATGCCTATCCA
GGAAGACACAAGGAATGCATCCTATATGAAATATCCAACAATAATGTCGA
AATTGCAAGCAAAGAAGAAGCATTATTAAACGAGACAAATGTGTTCAAAG
GAAGAGCAATGCTGGAGCCCGACAGCAGGGAGAACATATTGCAATCTCTT
ATAGTTTATGACCTCCTCCTGAAAAGAAAAACTCCTCTAGACCACTTACG
AGATGGGTTGAAGATCAATGGGGTACTTGATCTTTGCATTCAGTATCCTC
TGATTGCCAGAAGAATCCTCTTATTCGATGAGGAATTGGATGCTCTCAAT
GCGAGTTCCTTCATCGACAGTATCGATTTTATCCACCCATCAGTATCGAT
TGACGATGCGATTGTTATTAGACAGGCTGTTCACCGTCTTACGAAAGACC
AATTAAGCAAACTATTGGAATTCACAACTGGTACAACGGATCTATTTGCa
gtaaagaagaagaaaattcaaCTTGAGATTTGGCGCAGTTTAGGAGTGTT
CACATCCTCTTGTGCTTTTCAATTAAGAATCCCTGGAGGAGCAATGAGAT
CGGCAGATGACCTTACCCCAGTGCTTTTGGCTATGGATTCGGATGATTTT
AACACAGTTTAAAATTACTAAATCATTTCACCCCACCGTTTGTATTCTTC
AACtttaatttattcttattttgcaTCTCATCTTTTGAACCAACTGGAAg
gatttttttatctgttttttatctttttctttttggacaTATATTATGTA
ACCATTTAACATTTAATACTTTATGCAGCTGAAAATATTGCAACGTAAAG
CATGTGGTCCATAGACTTGTTTTTATCATGAAGTTATCcgattttttgga
tgttttatttCTTATTGGTATTCTCCTCTTTTTG
Run BLAST on NCBI

protein sequence of TCONS_00056671-protein

>TCONS_00056671-protein ID=TCONS_00056671-protein|Name=TCONS_00056671-protein|organism=Clytia hemisphaerica|type=polypeptide|length=236bp
FVVVWEVFRACERVSMHYGLQSDDEGTKTYAYPGRHKECILYEISNNNVE
IASKEEALLNETNVFKGRAMLEPDSRENILQSLIVYDLLLKRKTPLDHLR
DGLKINGVLDLCIQYPLIARRILLFDEELDALNASSFIDSIDFIHPSVSI
DDAIVIRQAVHRLTKDQLSKLLEFTTGTTDLFAVKKKKIQLEIWRSLGVF
TSSCAFQLRIPGGAMRSADDLTPVLLAMDSDDFNTV
Run BLAST on NCBI

transcript from alignment at scaffold_281:3812..17129+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056671 ID=TCONS_00056671|Name=TCONS_00056671|organism=Clytia hemisphaerica|type=transcript|length=13318bp|location=Sequence derived from alignment at scaffold_281:3812..17129+ (Clytia hemisphaerica)
GTTTGTAGTAGTTTGggaagtctttagagcttgtgaaagagtttctATGG TAAGTTGACTATGTGTTTTTGCCTGGTTTTCCAAAGTttagaaagtctgt caacaaaggttcacacacagactgtttataacattctgtgtcagaatGGC CTGACTCTGACTTTAAAGTAATACTTAGAACAACTgctttaagtttttct ttttttagcacTATGGGCTACAATCAGATGATGAAGGGACCAAAACATAT GCCTATCCAGGAAGACACAAGGAATGCATCCTATATGAAATATCCAACAA TAATGTCGAAATTGCAAGCAAAGAAGAAGCATTATTAAACGAGACAAATG TGTTCAAAGGAAGAGCAATGCTGGAGGTCCCACGTAAcaacaaagttttt ttattctCTCTAATTTCAAATATTAAGAATGGTTGAGTTTGGCGAAATCT TGACCTGAAGTCTTAACCCCCACACTGCAATAATTgcaatttgttttcat ttggtttgaaagttcaaattttagcaaaaaCTGCTCAAATTTACAtgtcg ccgtgtcaattcaagacagacttaagtccatttttcgaaaattgacctTA GACCGTAACCCCCCATTTTATCATGCACGCTTTCCAAAAACGGCCTTAAG TCCACAGAATTCTAATGGGAAAGAGGTGTATTTtgctattaaaaaaaaat aagaatttagaatgTTCCATAATATATCAACCATAAGCAGAAGTCCTAAA TTTATtagtgcaaattttattttctatgaagcattgaCATAAAATGTGTA GCCTACCCTATTAGCCCaagggggggtagaatctaccacgctggagttct tttgtttatatcttggagaaaaatttttcaaacgacttgaaactttctga cttttaataaaatcttattaagagtacttgtacaaaattttagggtcata ggttgtccagatcagctttattgtgaaacatgacataaaacccagctaaa atccttaaaactcaaaattttaaagtgctgataacttctaaactatttat tcaatcattttcaaatNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNtaaaactcaaaattttaaagtgctgataacttctaaactatttattc aatcattttcaaattttgacacgtgataggcattgataatacaaatttaa aaaatttaaagaaaatttttgaaaatgatgacgtcatcatttatgacgtc atcaaattttgaaaattttactcatcttcagaataaattttaagaaaaaa tcttcatggaaattgcTTAACCGGCAactatgttaaagaacagtctttta cctttcagaatcttcaaacagaatcgaaatatctttattggttcgactgt aatagaNaacagaatctaaatatcattattggttcgattgtaatagacat ttttgtaaaccatatattttggctttttgccgacaggtggaaattttgtg atgacgtcatcggtttttgaatgacgtcatcaaacttttttttgatagaa aagtcaaaaaaacttgGGGCTAATCGGGTTAAGACAATTTATGGCAGCTA CGTAAATATTTATATCTTATATATTTACTAGTTTGTTAAAAGGCAACTCA TTTATGTATGGGATATCTCTCATAAAATTTAGAACAGTACCTGAGCGGTA ATGTTAAATCCCCTAACTTGAtctaaatttttatattttctatagTACAT ACATAAGTAGAGAATTGCATAGTTCAAGGAAAGTGAAAGTACAAATAAAG TCGAGTTAAACAAACAAGTTGTTTCAATTTTACTCTGCTGTCAGTTTTCC CAATCTTAAGCCATATATAAAAATCTGgttataaaaaatatacaaaaaac atcaaataGAAAAGCAACAACAAGCAAAACTATTGAGAAAATCCTAACCC TTTACCACGATTCTGTCGAGACGTTTGAAATGCTTGTTCATATTGATTTT CAAGGCCTTTATAAAGTCTTTCTTGCCGCCTAGCATCTAGCGCATTCGAA GCAAATGACTTTGATGCATTTTGATCGCTGCTGCTGGCGTTGGACTTTTT GAAACCTCCCATTAGACGAAAGAATTTATCGTTTCTATCTTCATCGCCCA ACGATGCGGACCCCCATTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAAAACTGCA GAACATGTCTTTATGGCAATCAagtttcaagattttttgactGTGACCCT CCCAGCATCCAAAATTATTTAGCATAACTTTGCTAAATGATTTATTGTAT GCAAATAATTCATTGATATGATTAGTTTATTCAGActacaataaaacaaa agaagtaaaaaaaagcTTCTCATTTTTTTGTGTTCTCTCTTGTTTTCATA AACAGATAAAGTTTAAATAtaaaatatgaataaaaataaacagGTGTTAC AAAATCACAACAAAAAAGCTTGTAACTAGATTGTATGTGGTTTTCTATCA AAGTGTATTTAATATTTCAACTCGAGTTTTTCAGAAGAAAATAAACATAG TATACTTGTtaaccaaaaaaatgtttcatagTGTGTACATTTTAGACATT TTATAACTGAATTTAACTGAACTTAGTTATACATGTATGTATCTGTGTAT GCCTTACACAACAAGGGTAAATAATACAAAGAGTTAAAAGGGTAAAAAAA TCCTCTGAATCTGGAGGCTAACACAATACATAACGTATATTACAATAAAA ATctattataaaacaaaatgctcccaataaaaaaatatcaacaacaacaa gtgaaaaagttcaaattttggTCTAATTGTTTccatttgaaaaattgttt ccatttgaaaaattgttttgttgtgGAAAGAGCAAGCTCATCATTGCTTg attttgttgctgttgttgcaAAATAAGCTGCTGCATTGTGTTTTCACGTT GCTCAGCAATTTTAAGTTCTCGTTCACGATATTGTTTTTCCGTTTGCATT TTTTCACGTAAATAAACCATAGTATCATCTGTAGATCTTCTTCTCTTCTT GGAACTTGAGGAGCCTTCACTCTCGTCTTCTTTAGAATTACGTTTCTTTG TTTCACTGTAGGTTTCCATCATTTGTTTTCGTACCTCAGCTGCTGTTTCA CGTTCCTTTTCTATAGCTTTGCTCGAGTTCTGGCGATCTTGATCTGCAGC TAACTCTATATCTGCAAATCTATAAGTGCTTTTTCTTTCTCTGTAAGCTC TTCTGGATTTATACCTGAAGCTCTTTCTTCGCTAGCCATCTTTTTCTTGT GGTCTTTCTCCATAGATGCATATTTTTCTCTCACTGATCTGTGTGTCACA GAAAATTTGGGATGATCCAACTCATTCAGTGATTCAGCGATCATTTTCCA TGCTTCTCCACGAGGAACAGTTCCAAGCTTGTGAACATACGGTTAATATG ATTTTTTAGGATTTCTCGCAGCAACATATCTTCATGATCGGCTGTCCAGC TCATCGGTGACCtgatataaaaaataattcaaagataTTAGGAATTGTGT CttgtgaaaaaaatataaccATCTATACTATAAACATAGAAATATTTTAC AGAGTACAGAATGCTATAAAAGCTTTAATAATAGCTTCAAGTACATTCTG ATCAATTTTGCATTTCTCAAATACTGATTCAAAGTCAATCAAGTAATCAA AAAGTTAGGATAAAAGCACAAAAGGTTTAAAAGAAAACTaagtttaaaag aaaactttcttaATTTTATAACCAAATAAACAAACACAACAATGAACATA CacacatcaaattttaaaagaacagtgAAAAAACNNNNNNNNNNNNNNNN NNNNNNNNNNNTGAAATGGCAGTTGGGGACAGTCTGTGAGAGAGGTTACA GAGGGGTTTTAGATTATTAAATTattcattgtcattttattgacaaaata catttcaattaacaaaataataagacaATCACAATAAATGGAGTCCGCCA ACTGAGATGCAGATGACATAAAATNtattcgtcagattgtttgttttcac acatccctttagagcttcagcgtggtgtgctgaaaacattcacaatctga tctcaggttaatcTAAACAGGCTTCGGGCATTCCTGAGGCATGAAAGTCG TCCTATGCAAATCTTGCCACNtttaaaagaaaactttcttaATTTTATAA CCAAATAAACAAACACAACAATGAACATACacacatcaaattttaaaaga acagtgAAAAAACCCTCTTGTTGcaagaaaacttttaattaagttcctta ttttcttttttacttacTTCCTCTTaggtttttcagttttttcagccatt ttctgTTCAGTTTTCTTGCTTTTTCTTGTTGTTGTCACTTCGCCAGCTCA CGTTTTCTCGAGAACTTCGTTTCTTAGAAATGGCGTCCTAGATAGCTGAA AGAAGGCGTTCGATCAGGGAATCTCCTTTCTTGCGCATTAGGCAATTTTT CATGCGAAAGCCGCTGATGAACTCCACCGCCGTTACATCTTAAGATCGCT ATTGGCTGCTGTTGCGTTGTCACTGCATTTTAAGACTTTAAGCCGATCTA ANTTGACCGATTTTATTGTGTTCAATACTGCCTTCCTTATTTTATCTGGA AGAAGTAGAGGCATTGAATACAGAATTGGAGGAATATAACCCTATAGCTT TCACAGTGAGTAAAAAGTATGCTATTTCTTGCCTTCATAACATTATAATG TTGATTTGgtgcaaaataatttttcatctaaaagagaagaaacttaaatt ttgagccNTACAATAATATTTTGCATGCTTTCTTTTCCAGAAAAGTTCTG AATTTGCTTTGAGAGAACTTGTCTTCCGAACCAAAggttgtcggccatga cacccttCCCTGTCGACATTACACTCGAACCCGCTCCTCTAAAATAAGAT TCATGTGGTCTGCGTACAGGCGCGCCaccatattcttcagattgtatatt ttcgctcacgtctttagagcttcagtgaaaaaatgcaaaatctgttatca ggttacgaTTATCATGAAAGAAGAATCGAGCTTGAGGAATCCTCCTTCTG CATTAATGGTTTCAGTCATCCGACTGTTTTCttaaattcttataaaatgc TTGCTGCTCAGAGTGATGGGCTTATTGACCGATTTTATTGTGTTCAATAC TGCCTTCCTTATTTTATCTGGAAGAAGTAGAGGCATTGAATACAGAATTG GAGGAATATAACCCTATAGCTTTCACAGTGAGTAAAAAGTATGCTATTTC TTGCCTTCATAACATTATAATGTTGATTTGgtgcaaaataatttttcatc taaaagAGAAGAAACTTaaatcacttttttattttttatttaagtaGTTC CTGCACATAACAGGTTTACATTGTAGTATGATCAAATATTGTGGGATGAA GGGTGACAATTTATTTAAAGGGCTGCTATTTATAAAGGGCGGCCACGTTT TATGAAANTACAATAATATTTTGCATGCTTTCTTTTCCAGAAAAGTTCTG AATTTGCTTTGAGAGAACTTGTCTTCCGAACCAAAGGTTGTCGGCCATGA GACCCTTCCCTGTCGACATTACACTCGAACCCGCTCCTCTAAAATAAGAT TCATGTGGTCTGCGTACAGGCGCGCCaccatattcttcagattgtatatt ttcgctcacgtctttagagcttcagtgaaaaaatgcaaaatctgttatca ggttacgaTTATCATGAAAGAAGAATCGAGCTTGAGGAATCCTCCTTCTG CATTAATGGTTTCAGTCATCCGACTGTTTTCttaaattcttataaaatgc TTGCTGCTCAGAGTGATGGGCTTATTGACCGATTTTATTGTGTTCAATAC TGCCTTCCTTATTTTATCTGGAAGAAGTAGAGGCATTGAATACAGAATTG GAGGAATATAACCCTATAGCTTTCACAGTGAGTAAAAAGTATGCTATTTC TTGCCTTCATAACATTATAATGTTGATTTGgtgcaaaataatttttcatc taaaagAGAAGAAACTTaaatcacttttttattttttatttaagtaGTTC CTGCACATAACAGGTTTACATTGTAGTATGATCAAATATTGTGGGATGAA GGGTGACAATTTATTTAAAGGGCTGCTATTTATAAAGGGCGGCCACGTTT TATGAAAGGCGGCCGCGTTTTTTACTGCCTTTTTCATAATCTAGTCTGTG AAATATATTGGCTGAACATAAACAAACATGGTAGCTACCCATGTGATTTA ATGAATGTGGTGAGTGTGGTGAGAAGGAATCTTGGCGAAGAAGACCAAAA CATGGAGGAATCAGGATATAACAAGGTATGAATACTGTTTTTAGATTGCT TTTTGCTGTTTTCAGAATCTGGGACAGAATCATCATCAAACCTGACAACT TTCAAACAAAATTGCTAGCATGTCTGCTCCCATCCAGGCCAGCATCATCC ATTTCATTCAATAGTGAACTGAATTATAAAAGTTGAGGGcatggttgttg ttgttgcgcTGACATTTATTTTCCTAGTAACCTCGACCTGAACCTGTGTT ACATACTAGCTGCACCGTATTATTACTTTGCAACTTGTCTAGTGTCTACC TTCAGGTTACCTAATCCCGACCACCCCTATTATCACTATCTAATCCTAAC CCCCCCTCTAATCTGCAGAAAATGTTGGTCTTTACTTCACAAACTTGATT ACATAATCATTAAGAAAACTAATCTGAGCCATCaatataaataatataaa aacaaaccaaagGAATGGATACAAAGTAGAAATATTGGTAATTTCATGGA AtatattatttattaatttattaagTTTTTTACACGTTTTGTTTTCCCCC ATGCTGTCAAAAAGATTTCTGCTTATTTCTTACCAGAATTcaagaaaact caaaaaaggtTACACAGCCGTGGTAAAAAACATGTGTAAAAAAcataata aattaataaataatatagtaataaattgaaacttttattTATCACTAATT TAAAGTATAATTTATATATGATTTTCGTTTTAAGGGTTTCAAGTTTTTGA ATGAGAGGCATTTAGATTGATTGAAGCAAAGTTTTATATGTTATAAAATT GACGACTCCGTTGCTGGAGACGTGAAGAATGATAAGCTTATGGAGATTCG ACTATGTTATGGCGACATATTGATGTATAGAAAAACTTTTGACATGGTTA ACAATGCAAATCTGAAAACTTATGAAGACAAGAAAGATGAACTTAAAACA AGAATTAATTCCAATCACCAATAACGCAAATCACAATAACAAGTTCACAA TATTCTTTGGTctaatatgttttgaaaatgggcAATATATTTCCAAAAGA GGACAACAGTTCACACATACATTGTGTCTTTTTGGAAATTCTGGAATGTC GCGACTTTTTGTTCcgctcaaattttttttgaacgtaagcaaacttTACA TAAGGCCTTAGAACACTAAGTAAGCCACCCTTCAAGGTTTTAAGTAagat tttacgtacatgtgaaaaaaactttaaggGTGGTGTAAAATCTACATCtt taaggtggtcgttaacaaacttttttaaaaacgGGCGGCGGGGTGGGCTT TTAGGGGCGGACCGCAAGATCTGCTCAGGTTTTCTACTTTCCTCTTCttt atatgaaataaaactttagGATATTGTTAAGTaaggttcaaactttaatt tgaactaaaaattaaaaaatcgacCCGAAAAAGATGATCCTATCTCAGAA GTGTTAACGACCACCTCAAGCCAGGGTATAGACTTGTACTGTTTGGGGTA ATTTGGAATGTCGGGAAGGTCGGAGTGTCCCGGGGAGTAAATGtacaaaa tatattcaaatctTCTCTGGAAAATTTTCTGAACCTTACTTCTATTTCTT CCTACATGAACTGGTTGTGTTCGAGAAAGAGTGGCTGATGGCAAGGGCGG AAGTGGAAGAACAGGTAACAACAAACGAAGAGGCTGAAGTGCAAGAACCA AAAAGGAAGAAACAAAAACAGGTAATTATATTTCATTATATTATGTACAA ACTCAAACATCGTCAATGACAGGGGGCAGTGTACAATAAAGCATCATGTA AGGATATTCCTGTTGTATTCTGGAGTCTTTTGGTTAGGTAGGACACTAAT GTATGGGTGGGTGGAAACTGCTGCACAGCTCTAAAACAtgtcttttaaaa tttcttaaactTAGTGAGAATTAATTTTAGTGAACAAcacaatttcaata tttatggCTGAAGAAAGAGGAAATAAATAGTTTTAGGAGAACAGAGActg aattgaaagaaaattacatCTGTTTGTTAATTTGATTTTCCAATGctgac tttttttatttttattccgcCGCATAACTAGAGAAATGGAAAATATCGTA AATATTTAAATGCTCTTGACTAATGAAAACGCTGgtattttttggaataa aaaatgaGATAAATTTTGGGGAGAACTTATTGGGCATTggtgaaatattt aattttaggcaaattttgtcaaactttccaataaaaattCTAACCAAAAA GGTTCGCTTAATGTAAATTTTCAGACTTTCCAATTAGTAAAGAATTTGGT AACACCTAAggtatttggaaaatttgagaatGATATTgaaatttgcattt tttttccTTTGTAGCCACAAACAGACATAATCTCAACAGAGAAGATGGCC AACGTCAACTCGTTTGTGTTCAAGAAAGTTAATTTGGGCTTACCTGTGGC AAAACCAAAGTCTTCTGGGTTTTCAGTGGTGTGTACCGAGAAACGACAAA ATTTCGTGAAGAACACGTCCGCCACAACATCCAAATCGGCTGACAAAACA ACTTCAAATGACTGTGACTTAACGGTAAAACCAGTTGACCGAGACAGTTC GACAAAAACTTTGACAATTCCGGAAAACCAGGAGAAAATTACAATAGATA CCGACGACTTTACGATGATTACTGATGACCACAAAATAAATGACTCAACA AATACTGATGACATGAATACAAATGACGCTATCCAACTGGACAAAGTGAC AAATCTCGACAATGTCGACACAAGTACAGGGACAGGGTTGCTCCGTGATG ACCATCCAACTGACGAAACTGTTACCAAAGACGCCACAACTGACGACATT ATCTCTGATACTGATAATACGGTTACTGATCACGAGGACTGTAATAAATT GACATTCACTGACAACGATGACAGCATTAACAAGATAGACATGATAACTG TTAAGGTTGACGAATCACTTGACATTGCAGCCATCATTCACCAACCGACA TTGAAAACCACACCACAGAACACACGAGAAGTTCTTTCAAATTTGGGCTC GATCATACCATCATCGTGTTCAATGCTGAGTGAGGTCCTGCATGCGTACA ACGAATCAGGGGCGCGACAAGACCACTGCGTGGGTGATGATTTCAAATCC CTGAAAATGGAAgtatttgctttgaaaattgaaaatagtcAATTAAAAGA AGAAGTCATCTCCCTCAAAAATGTAGTTGCAAACATGAACACAGAAATTT CATCTCAACTGAAAGATATTAAGACTGCGATTGAACGCAATCCTCTAATT TTCACTGGCGAGGAAACCTTACCTGCAATTTCGGTTGAAGATTTGCAAAT GAATTTTGACAAGCCCCAACAACCAACAAAAGATCTCGGCAAGATGGCAA CTGCAGGATTATAGATGTTGATTGATAAATTCCATCCTGAAGAATTGAAA CGGGGCAATTTTTTAAGGGCTGGCATGGATTCGAAAAACTGAACCCCGAT AAGGTAGCAGacatttattttaaattgaaaactgattttggtttggAGCA GGACTATGATATGTCGACACAGGAGTCAAAGAttcaggaaaaattaaaaa aaNGGTAGCAGacatttattttaaattgaaaactgattttggtttggAGC AGGACTATGATATGTCGACACAGGAGTCAAAGATtcaggaaaaataaaaa aatataaagtatttgtaaatagttttttttatatataatttttttttcat tttttaatttgatttttctagGATTTTTATGTCTAGTAGAAAGCCAAAAA TTTAGACCTTGTTAGCAAGGATAGATATGTATGACACTTATACAGGACAA TATTTTGTTCGTTCTTTACAACATTTCATAATTGTCCTATGTTCTTTAAT TAGAATATTATgttctttttgaaataatttttttgaaaattttgttctgC AAGAAAAACAATTCTATTGTCACCATCACAACTTTGATTCACATTTCTTG TAATTTGACTGTATCAATCAAATTAATTCNTATGTATGACACTTATACAG GACaatattttgttcattctttacAACATTTCATAATTGTCCTATGTTCT TTAATTAGAATATTATgttctttttgaaataatttttttgaaaattttgt tctgcaaaaaaacaattctaTTGTCACCATCACAACTTTGATTCACATTT CTTGTAATTTGACTGTATCAATCAAATTAATTCATTTTGTGACATTTCGA ATTGCGGTTGCACCAGTCGGTTTGAGGTCAAGaaattaagattttaaaaa gttgCTTTTACAAAGTATTTAGTAATTTAGCATTGTGCAGTTCGAGAAAA AAACCATTAGCATTACCCCCTATggacgattttttttttcaatttgaaat cctaagaaatttgaaaaggttTCGGAAAATGCAGGATTTTTCTTAATTAT TTTTTAGTCAAATATATCGGAAATtccataaaatttgctctattttcttA CCAAGTATTGGAAAGTCCATAACatttgctctattttcttgccAAGTATC ggaaaaattcaagattttccataaaaaatctAGAATGTTACTAAATCCTG AAATTTTCCATTGTAGAATGCTACAGGGAATCCATGTCGtccacaggggg gggggtaacgGACTATAACTTGAACCAACCATTGGCAGTTTTGAACCATA CGAAACTTAAcagaggaagagatttgtaattgtctTTTGATTGTCCCCCT GTGATAAGTTAAAATGGCCTCTCCCAAAAAAGAAAAGTAGATTCAACCCA GTGTAAGATTTATaatgttttgatgttaattGAAATAGTGCCAAAACTTG TAGAGACCTACTATTTTCAGCTTCAGCAATGTTGTTTTAAATcatttgaa tttatttcaacTTACTTTGAGCTAAGGCATTATATTATGTTCAATCTGAT GTCGATGACACACACTTCCTGAGAAGAAACTGAACGGCAAAGGAATAAAA AAGACGTGGGTTTGTGTTTGAGGTCCGGGGGAAAATGGGTCGAGCAGTAT TCGATTTTAATTACTTTACAGAACGAAAATTCCACTaagttttttattga tataGATACCAAAAAGTGCTTTCAGAACAAATATCAGCAAATcactattt tttatttaattcaaCGTCAATATTGGTAATATTTTgatagaaaatgtttt tttgtaatgTCAAAATAGTAGAAATAGAAACAGCTATGTTCTATATGTTC TGCACTTTACCAGCAACATTCATTACAtcatctttgttttgaatttttcg gcTCCCTTAGATCGGCCAGGTCCTGTCCAGTTCGGCctgataggatctag cattttgtTTGTTAAAACTTCTAGAATATAGTTATGTAAGgtgtttttta tcaaataaagaCGAAGCAATAAATCTAAGTCAGTTTTGTCTTTTATTTCA GCCCGACAGCAGGGAGAACATATTGCAATCTCTTATAGTTTATGACCTCC TCCTGAAAAGAAAAACTCCTCTAGACCACTTACGAGATGGGTTGAAGATC AATGGGGTACTTGATCTTTGCATTCAGTATCCTCTGATTGCCAGAAGAAT CCTCTTATTCGATGAGGAATTGGATGCTCTCAATGCGAGTTCCTTCATCG ACAGTATCGATTTTATCCACCCATCAGTATCGATTGACGATGCGATTGTT ATTAGACAGGCTGTTCACCGTCTTACGAAAGACCAATTAAGCAAACTATT GGAATTCACAACTGGTACAACGGATCTATTTGCagtaaagaagaagaaaa ttcaaCTTGAGATTTGGCGCAGTTTAGGAGTGTTCACATCCTCTTGTGCT TTTCAATTAAGAATCCCTGGAGGAGCAATGAGATCGGCAGATGACCTTAC CCCAGTGCTTTTGGCTATGGATTCGGATGATTTTAACACAGTTTAAAATT ACTAAATCATTTCACCCCACCGTTTGTATTCTTCAACtttaatttattct tattttgcaTCTCATCTTTTGAACCAACTGGAAggatttttttatctgtt ttttatctttttctttttggacaTATATTATGTAACCATTTAACATTTAA TACTTTATGCAGCTGAAAATATTGCAACGTAAAGCATGTGGTCCATAGAC TTGTTTTTATCATGAAGTTATCcgattttttggatgttttatttCTTATT GGTATTCTCCTCTTTTTG

Coding sequence (CDS) from alignment at scaffold_281:3812..17129+

>TCONS_00056671 ID=TCONS_00056671|Name=TCONS_00056671|organism=Clytia hemisphaerica|type=CDS|length=2133bp|location=Sequence derived from alignment at scaffold_281:3812..17129+ (Clytia hemisphaerica)
TTTGTAGTAGTTTGggaagtctttagagcttgtgaaagagtttctATGca
cTATGGGCTACAATCAGATGATGAAGGGACCAAAACATATGCCTATCCAG
GAAGACACAAGGAATGCATCCTATATGAAATATCCAACAATAATGTCGAA
ATTGCAAGCAAAGAAGAAGCATTATTAAACGAGACAAATGTGTTCAAAGG
AAGAGCAATGCTGGAGCCCGACAGCAGGGAGAACATATTGCAATCTCTTA
TAGTTTATGACCTCCTCCTGAAAAGAAAAACTCCTCTAGACCACTTACGA
GATGGGTTGAAGATCAATGGGGTACTTGATCTTTGCATTCAGTATCCTCT
GATTGCCAGAAGAATCCTCTTATTCGATGAGGAATTGGATGCTCTCAATG
CGAGTTCCTTCATCGACAGTATCGATTTTATCCACCCATCAGTATCGATT
GACGATGCGATTGTTATTAGACAGGCTGTTCACCGTCTTACGAAAGACCA
ATTAAGCAAACTATTGGAATTCACAACTGGTACAACGGATCTATTTGCag
taaagaagaagaaaattcaaCTTGAGATTTGGCGCAGTTTAGGAGTGTTC
ACATCCTCTTGTGCTTTTCAATTAAGAATCCCTGGAGGAGCAATGAGATC
GGCAGATGACCTTACCCCAGTGCTTTTGGCTATGGATTCGGATGATTTTA
ACACAGTTTAATTTGTAGTAGTTTGggaagtctttagagcttgtgaaaga
gtttctATGcacTATGGGCTACAATCAGATGATGAAGGGACCAAAACATA
TGCCTATCCAGGAAGACACAAGGAATGCATCCTATATGAAATATCCAACA
ATAATGTCGAAATTGCAAGCAAAGAAGAAGCATTATTAAACGAGACAAAT
GTGTTCAAAGGAAGAGCAATGCTGGAGCCCGACAGCAGGGAGAACATATT
GCAATCTCTTATAGTTTATGACCTCCTCCTGAAAAGAAAAACTCCTCTAG
ACCACTTACGAGATGGGTTGAAGATCAATGGGGTACTTGATCTTTGCATT
CAGTATCCTCTGATTGCCAGAAGAATCCTCTTATTCGATGAGGAATTGGA
TGCTCTCAATGCGAGTTCCTTCATCGACAGTATCGATTTTATCCACCCAT
CAGTATCGATTGACGATGCGATTGTTATTAGACAGGCTGTTCACCGTCTT
ACGAAAGACCAATTAAGCAAACTATTGGAATTCACAACTGGTACAACGGA
TCTATTTGCagtaaagaagaagaaaattcaaCTTGAGATTTGGCGCAGTT
TAGGAGTGTTCACATCCTCTTGTGCTTTTCAATTAAGAATCCCTGGAGGA
GCAATGAGATCGGCAGATGACCTTACCCCAGTGCTTTTGGCTATGGATTC
GGATGATTTTAACACAGTTTAATTTGTAGTAGTTTGggaagtctttagag
cttgtgaaagagtttctATGcacTATGGGCTACAATCAGATGATGAAGGG
ACCAAAACATATGCCTATCCAGGAAGACACAAGGAATGCATCCTATATGA
AATATCCAACAATAATGTCGAAATTGCAAGCAAAGAAGAAGCATTATTAA
ACGAGACAAATGTGTTCAAAGGAAGAGCAATGCTGGAGCCCGACAGCAGG
GAGAACATATTGCAATCTCTTATAGTTTATGACCTCCTCCTGAAAAGAAA
AACTCCTCTAGACCACTTACGAGATGGGTTGAAGATCAATGGGGTACTTG
ATCTTTGCATTCAGTATCCTCTGATTGCCAGAAGAATCCTCTTATTCGAT
GAGGAATTGGATGCTCTCAATGCGAGTTCCTTCATCGACAGTATCGATTT
TATCCACCCATCAGTATCGATTGACGATGCGATTGTTATTAGACAGGCTG
TTCACCGTCTTACGAAAGACCAATTAAGCAAACTATTGGAATTCACAACT
GGTACAACGGATCTATTTGCagtaaagaagaagaaaattcaaCTTGAGAT
TTGGCGCAGTTTAGGAGTGTTCACATCCTCTTGTGCTTTTCAATTAAGAA
TCCCTGGAGGAGCAATGAGATCGGCAGATGACCTTACCCCAGTGCTTTTG
GCTATGGATTCGGATGATTTTAACACAGTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035694XLOC_035694Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056671-proteinTCONS_00056671-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056671-exon-scaffold_281-1491911889:3812..3860TCONS_00056671-exon-scaffold_281-1491911889:3812..3860Clytia hemisphaericaexon
TCONS_00056671-exon-scaffold_281-1510915933:3812..3860TCONS_00056671-exon-scaffold_281-1510915933:3812..3860Clytia hemisphaericaexon
TCONS_00056671-exon-scaffold_281-1575043694:3812..3860TCONS_00056671-exon-scaffold_281-1575043694:3812..3860Clytia hemisphaericaexon
TCONS_00056671-exon-scaffold_281-1491911889:4020..4187TCONS_00056671-exon-scaffold_281-1491911889:4020..4187Clytia hemisphaericaexon
TCONS_00056671-exon-scaffold_281-1510915933:4020..4187TCONS_00056671-exon-scaffold_281-1510915933:4020..4187Clytia hemisphaericaexon
TCONS_00056671-exon-scaffold_281-1575043694:4020..4187TCONS_00056671-exon-scaffold_281-1575043694:4020..4187Clytia hemisphaericaexon
TCONS_00056671-exon-scaffold_281-1491911889:16363..17129TCONS_00056671-exon-scaffold_281-1491911889:16363..17129Clytia hemisphaericaexon
TCONS_00056671-exon-scaffold_281-1510915933:16363..17129TCONS_00056671-exon-scaffold_281-1510915933:16363..17129Clytia hemisphaericaexon
TCONS_00056671-exon-scaffold_281-1575043694:16363..17129TCONS_00056671-exon-scaffold_281-1575043694:16363..17129Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_281supercontigscaffold_281:3812..17129 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

min expression (0 tpm) - - (1.12843 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0.0518317 0 0 0 0.117706 0.0550985 0.154304 0 0 0.0304873 0 0.0316178 0.256762 0 0.510674 0.464721 0 0 0.51935 0.425163 0.158879 1.12843 0.0491491 0.0438644 1.01568 0.486236 0.81295 0.414124
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056671 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
100200300400500600700800900Sequence
Match NameE-valueIdentityDescription
back to top