TCONS_00056674 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056674
Unique NameTCONS_00056674
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length150

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056674 ID=TCONS_00056674|Name=TCONS_00056674|organism=Clytia hemisphaerica|type=transcript|length=150bp
AGAAAGTTGACTTGGCCAAATCTAAAAAGTTGTCGCTGATAGAAAAAGTA
AAAGCAAGACTAATGAAGGAGTTTGGGGAATATGATTCCGTGAAGCAATA
CGTTACCCCTAAAGGACACAAGAAGCTGGAAACGACCTGTCCTTACCGAG
Run BLAST on NCBI

transcript from alignment at scaffold_281:48511..48919+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056674 ID=TCONS_00056674|Name=TCONS_00056674|organism=Clytia hemisphaerica|type=transcript|length=409bp|location=Sequence derived from alignment at scaffold_281:48511..48919+ (Clytia hemisphaerica)
AGAAAGTTGACTTGGCCAAATCTAAAAAGTTGTCGCTGATAGAAAAAGTA
AAAGCAAGACTAATGAAGGAGTTTGGGGAATATGATTCCGTGAAGGTAAG
GGATAGGGTCTTGCTTTCATCCTTTTCgttttcactttcatgtcatCCTT
GCAtaatcaattttctaattttatctTGTCACTTCCGTTCTAgttttaag
tttgtttgtttatttattgatttttttcatttatttatttgtcaTCTTTC
GCAGCGAACTGGATGAGACGGTGACTGAGTTGCTCAAAAAGAATAGCCCT
TATTCCATGGCCagtcattttaaattcaaaatcgtgttattattgttatt
acagCAATACGTTACCCCTAAAGGACACAAGAAGCTGGAAACGACCTGTC
CTTACCGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035697XLOC_035697Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056674-exon-scaffold_281-1491911889:48511..48605TCONS_00056674-exon-scaffold_281-1491911889:48511..48605Clytia hemisphaericaexon
TCONS_00056674-exon-scaffold_281-1510915933:48511..48605TCONS_00056674-exon-scaffold_281-1510915933:48511..48605Clytia hemisphaericaexon
TCONS_00056674-exon-scaffold_281-1575043694:48511..48605TCONS_00056674-exon-scaffold_281-1575043694:48511..48605Clytia hemisphaericaexon
TCONS_00056674-exon-scaffold_281-1491911889:48865..48919TCONS_00056674-exon-scaffold_281-1491911889:48865..48919Clytia hemisphaericaexon
TCONS_00056674-exon-scaffold_281-1510915933:48865..48919TCONS_00056674-exon-scaffold_281-1510915933:48865..48919Clytia hemisphaericaexon
TCONS_00056674-exon-scaffold_281-1575043694:48865..48919TCONS_00056674-exon-scaffold_281-1575043694:48865..48919Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_281supercontigscaffold_281:48511..48919 +
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056674 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top