TCONS_00056686 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056686
Unique NameTCONS_00056686
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length401

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056686 ID=TCONS_00056686|Name=TCONS_00056686|organism=Clytia hemisphaerica|type=transcript|length=401bp
ACTGGAAGTCATGGAAAAGTCTTTCTTGTTTTTAATACTAAACGTGAAGC
TAATGATCACTACAACAGAATAGCACCACCCAAACCTAGAGATGTTACCA
CAAAGGCTAGCCGAAAAGTAGCTAAGAGGAAAATTGATAAAGaatttgag
ACTGATTTAGACTCCATTGCTACTGGTAGCCCTGCGTCCTTACCAAAGAA
ACAGGCTGACCCTAAAGAGCTATTGTCAAGACAGAATCAGCAAGAGCTAC
TTAGATCCATTGAGGACAACTTATCTAAGGAGTGAgttgttttagtttat
ttaaCTGAAGTGAGCAAAAAGTATtgctattttttttatgaatggtGGAG
AACCTGATCCTGCTTAAATTCACCAGAACTGCCAATTCCCCAAGAAGGAG
C
Run BLAST on NCBI

transcript from alignment at scaffold_281:273604..278330-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056686 ID=TCONS_00056686|Name=TCONS_00056686|organism=Clytia hemisphaerica|type=transcript|length=4727bp|location=Sequence derived from alignment at scaffold_281:273604..278330- (Clytia hemisphaerica)
ACTGGAAGTCATGGAAAAGTCTTTCTTGTTTTTAGTAGGTTTTATTTATT
TGCCTTTTTATTTCCTAGTCAACCTTCCCCGGCTAAATATCTTTTTTACT
AGTTACAGTAAAAAAATCTTTAAGTTACACTTGTGTGAAAACTGATTTCC
AAGGGTGGCTAATTTGAATATTTCCAAAAGTCGAGATAATTAAGACTTTC
GTAAAAAACAATAGAATTTCAACATAACCGTGTGAGGACCCATTTTTAGA
AATTTTGAATTGTCATATCTTTAGGTAATTTCTCTCTTTTACTTTATGTA
ATAAGAATTTTTTCTAACCATAGCAACTACAAAGAATTTTCAAACAGCCG
TTATTTGGTATAGAAAAGAGTAAACTCCTATAAACCATATGTTTTGGAAT
CGTCTTTAATGAGCTCTTTCATATTCCATCATCAGTTTAGTAATAATTTC
CCCTTCAAGGAGCAAGTGACTTTTCAAATCAATTATCTTTCTAACTTTAG
ATACTAAACGTGAAGCTAATGATCACTACAACAGAATAGCACCACCCAAA
CCTAGAGATGTTACCACAAAGGCAGAGGCGTATTTAGGGTAGGTCAAGTA
GGTCAAGTGACATAGTTCCGAGAAATTGAAAAAATATGAAAAATTGTGAA
ACAGGCTTTCTTATTCCTTTTAGTGATACATAGTCTCCTTCGGATGCCAT
GTCTTGCGTATCAACTTTATCAATTTTATGCGTGCGGCAGTTAAAACATA
GACTAACATTATCTCCGCAGTTTTACCTCCCTGGTGTTTTGCGAGTGAAC
CTTTCGCTATTTAGAGGCTTTTATTTTGATAATCCGAAAACCTATCTAAT
ACCGCCCGACCCATATCGCCCCGCTTGAGTGACTTAGCAANNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTGG
CCGCCTTTCATTTAGAGATAATATGAAGCCGAGAGACATAGCTAGAAATG
GCTGAAACGACCTAGCAAAATTTCTGAAAAAATCGGGGTAATAGCTATTA
GACTACGTACAANTGACTGCTTATATTTCTGGCCGCCTTTCATTTAGAGA
TAATATGAAGCCGAGAGACATAGCTAGAAATGGCTGAAACGACCTAGAAA
AATTTCTGAAAAAATCGGGGTAAGAGCTATGAGACTACGTACAGCTTCTC
TGTCGAGTTTATTAAAAAACAATACTCAATTCACTTTTCCTAGCTTATCT
CTTTCACAGATTTTATTGAGAGAAGCTCAGTTTCCAGAGCTGAAATTTGC
TGAAGTGACCCAGTTAACTTTTGAGTTTGATTTGAAATTCCAAGTGACTT
TCACGTCTTAACTGTGATTTTATAGCTTTAATTCTTGTGGATCGATTGCT
AAGAATTGATAGTCAGGGTATTATGCATCAGCACCAGTTTTCACTGCTTT
AAGTTGAACTAATAATATTTATTTTTTAGCAAAAATGAAGCATTTTTCAA
AGTCTTTTAAAACTTTGTTTTTTACCTGCTTTTGGTTGTTGTTGTGAGCG
GAAAAGAATATCTTAGAATGATTTGACACCATTTAATTAGCTCCCATTCA
ATTCAAAACATAAAAAATAATTTTAGGGATATAAAGGCCTATAAACTCAA
CTATAACTTATCTATATTTCTTGTTTTGTGGAAACGGACACTTGCTCCAN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNAGCACCAGTTTTCACTGCTTTAAGTTG
AACTAATAATATTTATTTTTTAGCAAAAATGAAGCATTTTTCAAAGTCTT
TTAAAACTTTGTTTTTTACCTGCTTTTGGTTGTTGTTGTGAGCGGAAAAG
AATATCTTAGAATGATTTGACACCATTTAATTAGCTCCCATTCAATTCAA
AACATAAAAAATAATTTTAGGGATATAAAGGCCTATAAACTCAACTATAA
CTCATCTATATTTCTTGTTTTGTGGAAACGGACACTTGCTCCACATCAGT
ATCTATTTTTTCACCACAAGCGGTTAATTAGCGTAAAAAGGTAGTCAAAA
CGTGAGACAGGGGTATTCGTTAAGTAAAAAAATTTTCAATTTTCATAACT
TGCGAAAAACGAGTACGATACAAACTACGTCTAAACAAAAGTGGAATCTT
GCATAAATAACTCAGATAGCGATTAAAAGAAAAATGATAAACGCGACATG
CAAGGAATATAGCCTTTCCAAGAACCAGACTTGAACCACTCGGCTTCAAA
ATTTTTGACCTACTTGGCAAAATTCCTAAATACGCCACTGAAAGGCTAGC
CGAAAAGTAGCTAAGAGGAAAATTGATAAAGGTTTGTGATTTATCGTAAA
TCTTTGGACAAGTGTGCATGAATTTTTATACCCAGTGTTTGTCGTATTTT
GTTTTCACAAAGACACTTCAGAGAGCAATAATCCAACAATCAAACTTATT
TCTAACTCGTGGAAAGGTGATGCAAAATCTGAAGATCACTTCCTGGCTTT
GTTTTATTTTCTCAGGATTTGGTTCTTAAAACTTCAAGACTGCTTTTAAG
GTAAATTCAATGAACTTCAATGTGTTACAGAGATATTTATTTATTTTTAG
AATTTGAGACTGATTTAGACTCCATTGCTACTGGTAGCCCTGCGTCCTTA
CCAAAGAAACAGGCTGACCCTAAAGAGGTAGAAACAAATTTGATTTTATA
GTCTTTGAGCTAATGTGTGACAAGGTTATAGGAGATTAATTTGCTTTCTT
TTCAAGAATATCTACAAAGTGAAATATTAGAAAGAATCTTTTTTCATATT
ATTTTAGACATCACATAATTGAGAAAGTTTCTTAGTAATACTAAAATCAC
AGTTCGTTACTTAATGTTCGATCGATATAATCGATTTTGATCCCTAGATA
GGCTCTGAAGGAGGTTCCAATAGTTTTTTTGTGAAATCGTTTTAGCTATT
GTCAAGACAGAATCAGCAAGAGCTACTTAGATCCATTGAGGACAACTTAT
CTAAGGAGTGAGTTGTTTTAGTTTATTTAACTGAAGTGAGCAAAAAGTAT
TGCTATTTTTTTTATGAATGGTGGAGAACCTGATCCTGCTTAAATTCACC
AGAACTGCCAATTCCCCAAGAAGGAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035706XLOC_035706Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056686-exon-scaffold_281-1575043694:278297..278330TCONS_00056686-exon-scaffold_281-1575043694:278297..278330Clytia hemisphaericaexon
TCONS_00056686-exon-scaffold_281-1575043694:277760..277830TCONS_00056686-exon-scaffold_281-1575043694:277760..277830Clytia hemisphaericaexon
TCONS_00056686-exon-scaffold_281-1575043694:274400..274436TCONS_00056686-exon-scaffold_281-1575043694:274400..274436Clytia hemisphaericaexon
TCONS_00056686-exon-scaffold_281-1575043694:274054..274130TCONS_00056686-exon-scaffold_281-1575043694:274054..274130Clytia hemisphaericaexon
TCONS_00056686-exon-scaffold_281-1575043694:273604..273785TCONS_00056686-exon-scaffold_281-1575043694:273604..273785Clytia hemisphaericaexon
TCONS_00056686-exon-scaffold_281-1510915933:278297..278330TCONS_00056686-exon-scaffold_281-1510915933:278297..278330Clytia hemisphaericaexon
TCONS_00056686-exon-scaffold_281-1510915933:277760..277830TCONS_00056686-exon-scaffold_281-1510915933:277760..277830Clytia hemisphaericaexon
TCONS_00056686-exon-scaffold_281-1510915933:274400..274436TCONS_00056686-exon-scaffold_281-1510915933:274400..274436Clytia hemisphaericaexon
TCONS_00056686-exon-scaffold_281-1510915933:274054..274130TCONS_00056686-exon-scaffold_281-1510915933:274054..274130Clytia hemisphaericaexon
TCONS_00056686-exon-scaffold_281-1510915933:273604..273785TCONS_00056686-exon-scaffold_281-1510915933:273604..273785Clytia hemisphaericaexon
TCONS_00056686-exon-scaffold_281-1491911889:278297..278330TCONS_00056686-exon-scaffold_281-1491911889:278297..278330Clytia hemisphaericaexon
TCONS_00056686-exon-scaffold_281-1491911889:277760..277830TCONS_00056686-exon-scaffold_281-1491911889:277760..277830Clytia hemisphaericaexon
TCONS_00056686-exon-scaffold_281-1491911889:274400..274436TCONS_00056686-exon-scaffold_281-1491911889:274400..274436Clytia hemisphaericaexon
TCONS_00056686-exon-scaffold_281-1491911889:274054..274130TCONS_00056686-exon-scaffold_281-1491911889:274054..274130Clytia hemisphaericaexon
TCONS_00056686-exon-scaffold_281-1491911889:273604..273785TCONS_00056686-exon-scaffold_281-1491911889:273604..273785Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_281supercontigscaffold_281:273604..278330 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.360379	0	0	0.498372	1.57528	1.09797	1.77923	2.17015	4.2432	2.80809	1.23062	2.5642	2.04198	0.839393	1.2386	0.183798	0.157218	0.196425	0.473779	0.687451	1.42795	0	0.385232	1.38873	4.2494	0.322684	0.270403	0.251984	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056686 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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