TCONS_00056693 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056693
Unique NameTCONS_00056693
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length505

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056693 ID=TCONS_00056693|Name=TCONS_00056693|organism=Clytia hemisphaerica|type=transcript|length=505bp
CGGTTGTTGCTGTTGGGGTGGTGgcggttgttgttgttgctgttggggTG
GTGgcggttgttgttgttgctgttggggTGGTGGCGGTTGTCGTTGTGGA
GGTTGGAATGGCTGTTGTTGCTCTTCATCGaaagattggtcaaaattgaG
TGCTGGTAACCAATCATTGTCCAGAAAGTTGTCAAGGATGTTGTCATCTC
TTTGGCTGGTGTTGTTTTTTAACTGCTGGTCcatgttatacaactttgta
tGGATTTGGTTGAACTGGTCTTTCATCCAACTTTTAAGATTTTCTATTGA
ACACCTACAAACTGGACTTTGATGTTGAGTCAGGGTCATTGCAATGTTTG
GTGTGGAAAAGTCAAAAGTAGGAATCTGGCCCACTCCTGGCAATGACATG
TGTGGCTCAATTGATGCATTGGATTGTTGGATTGTTGGTTCTGGTGTCAA
TGATTTGAGCGGCTCTGGTGTTGATGGTTTGAGCGGCTCTGGTGTCGATG
GTTTG
Run BLAST on NCBI

protein sequence of TCONS_00056693-protein

>TCONS_00056693-protein ID=TCONS_00056693-protein|Name=TCONS_00056693-protein|organism=Clytia hemisphaerica|type=polypeptide|length=168bp
KPSTPEPLKPSTPEPLKSLTPEPTIQQSNASIEPHMSLPGVGQIPTFDFS
TPNIAMTLTQHQSPVCRCSIENLKSWMKDQFNQIHTKLYNMDQQLKNNTS
QRDDNILDNFLDNDWLPALNFDQSFDEEQQQPFQPPQRQPPPPQQQQQQP
PPPQQQQQQPPPPQQQQP
Run BLAST on NCBI

transcript from alignment at scaffold_281:131..635

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056693 ID=TCONS_00056693|Name=TCONS_00056693|organism=Clytia hemisphaerica|type=transcript|length=505bp|location=Sequence derived from alignment at scaffold_281:131..635 (Clytia hemisphaerica)
CAAACCATCGACACCAGAGCCGCTCAAACCATCAACACCAGAGCCGCTCA
AATCATTGACACCAGAACCAACAATCCAACAATCCAATGCATCAATTGAG
CCACACATGTCATTGCCAGGAGTGGGCCAGATTCCTACTTTTGACTTTTC
CACACCAAACATTGCAATGACCCTGACTCAACATCAAAGTCCAGTTTGTA
GGTGTTCAATAGAAAATCTTAAAAGTTGGATGAAAGACCAGTTCAACCAA
ATCCatacaaagttgtataacatgGACCAGCAGTTAAAAAACAACACCAG
CCAAAGAGATGACAACATCCTTGACAACTTTCTGGACAATGATTGGTTAC
CAGCACtcaattttgaccaatctttCGATGAAGAGCAACAACAGCCATTC
CAACCTCCACAACGACAACCGCCACCAccccaacagcaacaacaacaacc
gcCACCAccccaacagcaacaacaacaaccgcCACCACCCCAACAGCAAC
AACCG

Coding sequence (CDS) from alignment at scaffold_281:131..635

>TCONS_00056693 ID=TCONS_00056693|Name=TCONS_00056693|organism=Clytia hemisphaerica|type=CDS|length=504bp|location=Sequence derived from alignment at scaffold_281:131..635 (Clytia hemisphaerica)
AAACCATCGACACCAGAGCCGCTCAAACCATCAACACCAGAGCCGCTCAA
ATCATTGACACCAGAACCAACAATCCAACAATCCAATGCATCAATTGAGC
CACACATGTCATTGCCAGGAGTGGGCCAGATTCCTACTTTTGACTTTTCC
ACACCAAACATTGCAATGACCCTGACTCAACATCAAAGTCCAGTTTGTAG
GTGTTCAATAGAAAATCTTAAAAGTTGGATGAAAGACCAGTTCAACCAAA
TCCatacaaagttgtataacatgGACCAGCAGTTAAAAAACAACACCAGC
CAAAGAGATGACAACATCCTTGACAACTTTCTGGACAATGATTGGTTACC
AGCACtcaattttgaccaatctttCGATGAAGAGCAACAACAGCCATTCC
AACCTCCACAACGACAACCGCCACCAccccaacagcaacaacaacaaccg
cCACCAccccaacagcaacaacaacaaccgcCACCACCCCAACAGCAACA
ACCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035710XLOC_035710Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056693-exon-scaffold_281-1491911889:131..635TCONS_00056693-exon-scaffold_281-1491911889:131..635Clytia hemisphaericaexon
TCONS_00056693-exon-scaffold_281-1510915933:131..635TCONS_00056693-exon-scaffold_281-1510915933:131..635Clytia hemisphaericaexon
TCONS_00056693-exon-scaffold_281-1575043694:131..635TCONS_00056693-exon-scaffold_281-1575043694:131..635Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056693-proteinTCONS_00056693-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_281supercontigscaffold_281:131..635 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.119857	0.233759	0.135709	0	0.484903	0.383177	0.154095	0.432787	0.303004	0.125107	0	0.55877	0.47828	0.496698	0.272236	0.584301	0.539858	0.0922229	0.509644	0	0.115885	0	0	0.24988	0.643427	1.49303	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056693 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top