TCONS_00056730 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056730
Unique NameTCONS_00056730
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2944

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056730 ID=TCONS_00056730|Name=TCONS_00056730|organism=Clytia hemisphaerica|type=transcript|length=2944bp
CTCTAGcttaaaatacataaaaatggaaattaaaaATCGTGACaaaatgc
aaaatatttttttcgcaTCAGTAAAATTTGTCAGTAttcattgggctatt
ccattttatatccatacagggggtggacgaacatttccagagggtaatct
gagaacaatttccaggggatgttttttcatttttccaagggggtaaaaag
ttattctaaaatttccagtggTTTAAAGACTGAtgttagttcgtccaccc
tcgctttaaggtatgaaaagaatttttccaagggtatttttttgcaaatt
tttccattttccagttgttctccacacattttcaataatttctttttgac
ttgaaaaggttcgtccaccccctgtatggttttttatgGAACAgtccatt
ttttaaagattgataATTATTGATAGATACTGTAAAATATCTCTCCTGAA
AGCTAACACAATCATAATGTCATTTTTAAAGGCGCTGACCATTAGTAGGG
AAGTCATTTTATACATTGACcgattcagaaaaaaaaatggtTCGTATAAT
TTGCTCTCTCATCCAGCAGAACATCATTTATGGTTCTCTGTTACATACAA
ATAGCAATAAGTGAATACGTCATTCTTCCATTTTCAATTCTTTACTATCA
ACAATACCAGGACCAGGTAAAACATCTGTCAAACCCAGTCCATTAATAAT
ATCCAAAACTTTTTGCTTATCAACTGGATTAGAGCATCTCTCATACATCA
GTCTCATTTTCTTGGTATTATAACCCAACAAATATCTTTCAGCAGATTTC
AATGTCCCTGTCACATGTATACAAGATAAAACACAAAGTCTTTGTCGCAA
CATTTTCACGAAAGATACACATGTTCGTACTTCACGGTGATAGTCTCTGG
CTACTTGTAAGAAAAATAtcccagtatatggatttgtgtattttacataC
ATCCCTTGAGTAAAAGTTGTTTGACCGTATTCTCCATAGAGTTCTTTTAC
AATGTTTTTGATCGTATTTTTTATGGTATCTTTGTCTAGATTAAGGTCGA
TTTTCTCATCCGCATACTGTATTTTGATGaccaaatatctgttctttttc
cGCACCATTTTGTATTAGTTTTGTCTTTGAGGTATCTGAAactggaaaaa
aaatatcagaGTCATATTACACTTTGATCATTAACAACAAAGTATTTTTG
CAGCAAATTCTTATTAGATTTTATAAACCAAGCATGGATTTGGGTGATAG
CTGGGTGATACCATCACTCAACTTGcacagaaaattttcaaaaatatatt
gacacaGATATACATCAAAGTTATTTCTCTATTTCGACAAATTTAACTAA
TTTTATTCGAAAAATTCCAATATTTACATCAATACGGGAAATTTCTGTGC
TTCTCGAATTTTCTGATCTTGCAATGCCcttttgtaaaaatgttttaGAG
AAAATTTATGTCCAACAAAGAGCAAAATAGGTCCTGTGATAATTAAACTG
GGACCTCAAAATTTAATCGCACCAAAAATTTCCCTACTACTAAATAAAAA
AGTGATGATTAATTGTAAATTGAGTATGATACTTCTTATTAATACGGTAG
AAATTTGTAATAGCTATGGTTATACGTTATTATCCACATATAATTCAATT
GAGGTTGAAAAAGCACACTTGTATCAAGCAAGAAGGGTGTTTATAAAAGA
ATGGTATAGGTGTCAGTAAAAAAACAATTATgaattaaaataataaaaat
acatAAACGGTATCCTCAAGTTGATTTGAAAgctatattttgtttttgac
aTCATTATACCATTCGTTCAATTTATATTCATCTAGAGCTTGGTAAAAAT
ATCTCCACCATAAGATGACCATATCCCATGGCTCCTTGAAAGGGCCTTTA
AATTTAGCGACATCTTGACGTGTGGGTTTGTTTTTCACTTGCCAGGGCTT
CTTGGTTAAGCAGCATGCgaaatgataaattttcaacGGGTGATACAAAT
AACGGCGAACATTATAAGCGTATGGTAATTCATTCCACATATCATGATCC
GCATAATAATGCCATAATAACACTTGGTCATTAGGACATTCTGTACCTTT
TGTTAAATCACCCCATAAATTCATCAACCCATTATAATGCTTTGTGGACG
GTTTAAACAAGATAATCCCTGCATTGAAACATGGATCAATAATACCAGGT
CTGGCACAATAAGCAGCATTGAAATCGGTCTCCAAATCAAATAACTCATC
AACACTGACTACAGGAACGACATCAGAATCTAGATACATAATTTTCTTAT
ATTGGGTATAATTCCACGCATGAAATCTCATGAAAGTTCCCGGTAATCCT
AAATTCCGCTCTTTCCTGCCCTTTTGTCGGTCCATCCAATTACAATCTAG
TGCTTCAACAAGTTTAACTTCAAAGCCAACTTTTCTTAATGCTTCTCGTG
TTCCTGGAGTCACACCATCAGAAACTAAAACAATCAATTTATGATAACAA
gataattttttcaacataTGACCAAGTTGGATAGCACCTATTGCATAATT
ATCATTCAACATTGCGGTCAACCAAGCATAAGGTTCCTTGCCACGGTTAT
CTTCTTTACATTTCTGTTGGTAATACCTCATGTCCATTTCATGTAACTGG
TATTCCATTTCCCAAGAGATTTCTTCAGCCCTCTTAACTCTTTCTTCATC
CTTGCTAGCCATTGAAACAATCAGTCTCACATATTGAATCATGTATTGAA
AAACAAGAGGGGCACATAAGCGGAACAgagcaaaaaataaaacaatgccc
ACAAATGCTCTAAAATAGTTTGATTGATGGAATgccattatttatttttt
tcagttcattgacatttttttcgctaaaaaaaataataaacataCAGATT
GTTATAGCCAGAATAGTTAAAGTTTTTGACATGACAGACAGCAG
Run BLAST on NCBI

transcript from alignment at scaffold_282:190025..193025+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056730 ID=TCONS_00056730|Name=TCONS_00056730|organism=Clytia hemisphaerica|type=transcript|length=3001bp|location=Sequence derived from alignment at scaffold_282:190025..193025+ (Clytia hemisphaerica)
CTCTAGcttaaaatacataaaaatggaaattaaaaATCGTGACaaaatgc aaaatatttttttcgcaTCAGTAAAATTTGTCAGTAttcattgggctatt ccattttatatccatacagggggtggacgaacatttccagagggtaatct gagaacaatttccaggggatgttttttcatttttccaagggggtaaaaag ttattctaaaatttccagtggTTTAAAGACTGAtgttagttcgtccaccc tcgctttaaggtatgaaaagaatttttccaagggtatttttttgcaaatt tttccattttccagttgttctccacacattttcaataatttctttttgac ttgaaaaggttcgtccaccccctgtatggttttttatgGAACAgtccatt ttttaaagattgataATTATTGATAGATACTGTAAAATATCTCTCCTGAA AGCTAACACAATCATAATGTCATTTTTAAAGGCGCTGACCATTAGTAGGG AAGTCATTTTATACATTGACcgattcagaaaaaaaaatggtTCGTATAAT TTGCTCTCTCATCCAGCAGAACATCATTTATGGTTCTCTGTTACATACAA ATAGCAATAAGTGAATACGTCATTCTTCCATTTTCAATTCTTTACTATCA ACAATACCAGGACCAGGTAAAACATCTGTCAAACCCAGTCCATTAATAAT ATCCAAAACTTTTTGCTTATCAACTGGATTAGAGCATCTCTCATACATCA GTCTCATTTTCTTGGTATTATAACCCAACAAATATCTTTCAGCAGATTTC AATGTCCCTGTCACATGTATACAAGATAAAACACAAAGTCTTTGTCGCAG CATTTTCACGAAAGATNTCACATGTATACAAGATAAAACACAAAGTCTTT GTCGCAACATTTTCACGAAAGATACACATGTTCGTACTTCACGGTGATAG TCTCTGGCTACTTGTAAGAAAAATAtcccagtatatggatttgtgtattt tacataCATCCCTTGAGTAAAAGTTGTTTGACCGTATTCTCCATAGAGTT CTTTTACAATGTTTTTGATCGTATTTTTTATGGTATCTTTGTCTAGATTA AGGTCGATTTTCTCATCCGCATACTGTATTTTGATGaccaaatatctgtt ctttttccGCACCATTTTGTATTAGTTTTGTCTTTGAGGTATCTGAAact ggaaaaaaaatatcagaGTCATATTACACTTTGATCATTAACAACAAAGT ATTTTTGCAGCAAATTCTTATTAGATTTTATAAACCAAGCATGGATTTGG GTGATAGCTGGGTGATACCATCACTCAACTTGcacagaaaattttcaaaa atatattgacacaGATATACATCAAAGTTATTTCTCTATTTCGACAAATT TAACTAATTTTATTCGAAAAATTCCAATATTTACATCAATACGGGAAATT TCTGTGCTTCTCGAATTTTCTGATCTTGCAATGCCcttttgtaaaaatgt tttaGAGAAAATTTATGTCCAACAAAGAGCAAAATAGGTCCTGTGATAAT TAAACTGGGACCTCAAAATTTAATCGCACCAAAAATTTCCCTACTACTAA ATAAAAAAGTGATGATTAATTGTAAATTGAGTATGATACTTCTTATTAAT ACGGTAGAAATTTGTAATAGCTATGGTTATACGTTATTATCCACATATAA TTCAATTGAGGTTGAAAAAGCACACTTGTATCAAGCAAGAAGGGTGTTTA TAAAAGAATGGTATAGGTGTCAGTAAAAAAACAATTATgaattaaaataa taaaaatacatAAACGGTATCCTCAAGTTGATTTGAAAgctatattttgt ttttgacaTCATTATACCATTCGTTCAATTTATATTCATCTAGAGCTTGG TAAAAATATCTCCACCATAAGATGACCATATCCCATGGCTCCTTGAAAGG GCCTTTAAATTTAGCGACATCTTGACGTGTGGGTTTGTTTTTCACTTGCC AGGGCTTCTTGGTTAAGCAGCATGCgaaatgataaattttcaacGGGTGA TACAAATAACGGCGAACATTATAAGCGTATGGTAATTCATTCCACATATC ATGATCCGCATAATAATGCCATAATAACACTTGGTCATTAGGACATTCTG TACCTTTTGTTAAATCACCCCATAAATTCATCAACCCATTATAATGCTTT GTGGACGGTTTAAACAAGATAATCCCTGCATTGAAACATGGATCAATAAT ACCAGGTCTGGCACAATAAGCAGCATTGAAATCGGTCTCCAAATCAAATA ACTCATCAACACTGACTACAGGAACGACATCAGAATCTAGATACATAATT TTCTTATATTGGGTATAATTCCACGCATGAAATCTCATGAAAGTTCCCGG TAATCCTAAATTCCGCTCTTTCCTGCCCTTTTGTCGGTCCATCCAATTAC AATCTAGTGCTTCAACAAGTTTAACTTCAAAGCCAACTTTTCTTAATGCT TCTCGTGTTCCTGGAGTCACACCATCAGAAACTAAAACAATCAATTTATG ATAACAAgataattttttcaacataTGACCAAGTTGGATAGCACCTATTG CATAATTATCATTCAACATTGCGGTCAACCAAGCATAAGGTTCCTTGCCA CGGTTATCTTCTTTACATTTCTGTTGGTAATACCTCATGTCCATTTCATG TAACTGGTATTCCATTTCCCAAGAGATTTCTTCAGCCCTCTTAACTCTTT CTTCATCCTTGCTAGCCATTGAAACAATCAGTCTCACATATTGAATCATG TATTGAAAAACAAGAGGGGCACATAAGCGGAACAgagcaaaaaataaaac aatgcccACAAATGCTCTAAAATAGTTTGATTGATGGAATgccattattt atttttttcagttcattgacatttttttcgctaaaaaaaataataaacat aCAGATTGTTATAGCCAGAATAGTTAAAGTTTTTGACATGACAGACAGCA G
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035744XLOC_035744Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056730-exon-scaffold_282-1491911889:190025..190838TCONS_00056730-exon-scaffold_282-1491911889:190025..190838Clytia hemisphaericaexon
TCONS_00056730-exon-scaffold_282-1510915933:190025..190838TCONS_00056730-exon-scaffold_282-1510915933:190025..190838Clytia hemisphaericaexon
TCONS_00056730-exon-scaffold_282-1575043694:190025..190838TCONS_00056730-exon-scaffold_282-1575043694:190025..190838Clytia hemisphaericaexon
TCONS_00056730-exon-scaffold_282-1491911889:190896..193025TCONS_00056730-exon-scaffold_282-1491911889:190896..193025Clytia hemisphaericaexon
TCONS_00056730-exon-scaffold_282-1510915933:190896..193025TCONS_00056730-exon-scaffold_282-1510915933:190896..193025Clytia hemisphaericaexon
TCONS_00056730-exon-scaffold_282-1575043694:190896..193025TCONS_00056730-exon-scaffold_282-1575043694:190896..193025Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_282supercontigscaffold_282:190025..193025 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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min expression (2.00114 tpm) - - (27.1534 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
27.1534 26.4844 23.2853 21.0841 13.2856 9.92275 8.8851 2.00114 8.67635 7.06993 8.89785 3.77958 2.31982 2.33586 5.1508 3.3144 7.76595 5.82633 3.77655 4.34455 6.45042 7.26669 20.7039 17.7354 3.78499 2.78018 5.84214 5.11403 10.5311 7.88773
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR029044Nucleotide-diphossugar_trans
IPR002495Glyco_trans_8
Vocabulary: Molecular Function
TermDefinition
GO:0016757transferase activity, transferring glycosyl groups
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0016757 transferase activity, transferring glycosyl groups
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056730 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
ZOOM
x 1
POSITION
0
5001000150020002500Expect = 8.32e-24 / Id = 31.38SequenceGLYG
Match NameE-valueIdentityDescription
GLYG8.317e-2431.38Glycogenin-1 OS=Homo sapiens GN=GYG1 PE=1 SV=4[more]
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