TCONS_00056740 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056740
Unique NameTCONS_00056740
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2198

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056740 ID=TCONS_00056740|Name=TCONS_00056740|organism=Clytia hemisphaerica|type=transcript|length=2198bp
CAAGTGCTTTGCATTTTAGATGTAAAAGAAAGTATCAAGCATCATTTTAG
AATGTAGTGGTTTTAAATAATAATGCATCAAAAAATTCCTGGAGATTATC
CAGTGtcaagattgtttattctttaaagaaagGTCAAGCATGGGCAACAT
TTGTTGTGCTGAAACATCGACCGACAGTTTCAAAACTAATGGGAAAGTCA
AGAATAACTTTGATGAAGATGATCCATTACAGGGTTCGAACCAGGAACCC
CTTGAACTACAGCATATAAGTGAAAGAGAATATGAGCTTtcagaaaacaa
agaaactCTCTTTCTAAGAAGGTCAGAAGCTGAATCAGCTGCACGGCAGg
CTCAAGAAGAAAAAAGGCGAAGACGGCACACTTTATATTCACCAGATCGT
ACAAGcgaaaattcaatgaaaaagactaaattgaaaaaatcgaaTTCATG
TTCGACAATATTTATAGACGATAATACTGCATCTCAACCGAACTTAAAAA
TGATGTTAAAATGTGTTTCCTTAGCTATTTATTACCACGTGAAAAACAGA
GACTATGAAGTTCATTTATTAGATATTTTTGATGAGAAGCTTCATCCGTT
ATCGAAAGACCCCGTACCAGAAAATTATGGTCGAATTAATCCGGAACATA
AACATATTTACCGGTTCCTTAAGACGTTATTCAGTGCTGCACAGTTGACG
TCTGAATGCGCCATCATTACACTGGTATATTTAGAACGACTGATAACCTA
TGCAGAATTAGACCTTCATCCGAGTAATTGGAAACGAATAGTTCTTGGTG
CTGTCTTGTTAGCTTCCAAAGTATGGGACGACCAAGCAGTTTGGAATGTA
GATTACTGTCAAATTCTTCGAGATATCACAGTAGAAGACATGAATGAACT
AGAGCGGATGTTTTTAGAGTTACTTCAATACAACATCAACGTCCCCTCCA
GTGTGTACGCTAAATATTATTTCGATTTACGAGCGCTGGCTGAGAGGAAT
AACTTCCAATTACAAATGCAACCACTGGACCCTAAACGTGCTAGAAAATT
AGAGGCTATATCTCGATTTTGTGATGAGAAATTCACGTTACCATCAAGGC
GTTTACACAGGTCGAACAGTGTGGATGATATGCGATCTAAAAGGCGAAGT
ATTGCTGTTATTTCTTAGATTTCCTATCCTAATGTTTTAGCATGAAAGGT
TTCATTTACTTTGTGCTCGTAGAAATTAATGATTCCTTTATGTTTATAGA
TAAAAGCGAGAGcattttttagcattgtttCAGAGATTTCAATTTCAGct
gaaattttgacttttgaaagtAAATTTATTTACAAACAAAATATGCTTTT
CTGAAAGTCCTTGTCTGTACTTTTGGCATTAATCTCAATATTCTACGAGT
CAGGTATACAATAGTTACTTTTCTTTCTGAAACCTTTCAAatttcatcaa
tattttaaaatacTATCACCACACCCCTTTTAGTACTTATTTTATCGCAA
TATTTTGACACCATGTTATAATATTCCCCCATTGCCTTGTTCATGTCGTT
TTTTAAGTCTTTAAATTAATATGAAAGATTTTATTAGTAGTTTAGTGTAA
TAATTTAAACAGCAGAATTTGAGGACTTGGAAATTTAAAATACAAAGCCT
GGTCATGTTTATAAGATTTTTATGTTCTCGCAAGTTTAAAAAATTCTCAT
TGTTTTAgctttgaaaactttttataatccatgattttttatgattcttG
TATTATTGCACGCTTCAAATTCATCAATAATCTGCAGTACTTTAGATGCA
AGCATTCAAAggcttttgtaatttttcaagcATTAGGCTTATTTTATCCA
AAAGACCCACTAAATACCTCTCCTGTATAATGCACGCTATTAATCGCCAA
TTGATGATAAGAATCAAGGGTCTACTTACCAAATATTAGCACCATTTCAT
ATCTTTTTACGATGCAAGCCGATCTAGATCTAACCTTTTGTAAAAATCTT
CAGTTAGTCTGTTCTccatttttttctattgtcaataaaatttaacATTC
ATTCGCCCTCTAAtagtatttttgtttttatcatgtttatcacttttttt
tgaaatattttatatacTGTGTATTACTATTAATTGTTATTTAGATCTTT
TTTTGTTCTCATTTTGCAAAAGCAAAGACcattttaaaattatgaaaC
Run BLAST on NCBI

protein sequence of TCONS_00056740-protein

>TCONS_00056740-protein ID=TCONS_00056740-protein|Name=TCONS_00056740-protein|organism=Clytia hemisphaerica|type=polypeptide|length=342bp
MGNICCAETSTDSFKTNGKVKNNFDEDDPLQGSNQEPLELQHISEREYEL
SENKETLFLRRSEAESAARQAQEEKRRRRHTLYSPDRTSENSMKKTKLKK
SNSCSTIFIDDNTASQPNLKMMLKCVSLAIYYHVKNRDYEVHLLDIFDEK
LHPLSKDPVPENYGRINPEHKHIYRFLKTLFSAAQLTSECAIITLVYLER
LITYAELDLHPSNWKRIVLGAVLLASKVWDDQAVWNVDYCQILRDITVED
MNELERMFLELLQYNINVPSSVYAKYYFDLRALAERNNFQLQMQPLDPKR
ARKLEAISRFCDEKFTLPSRRLHRSNSVDDMRSKRRSIAVIS
Run BLAST on NCBI

transcript from alignment at scaffold_282:270560..275530+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056740 ID=TCONS_00056740|Name=TCONS_00056740|organism=Clytia hemisphaerica|type=transcript|length=4971bp|location=Sequence derived from alignment at scaffold_282:270560..275530+ (Clytia hemisphaerica)
CAAGTGCTTTGCATTTTAGATGTAAAAGAAAGTATCAAGCATCATTTTAG
AATGTAGTGGTTTTAAATAATAATGCATCAAAAAATTCCTGGAGATTATC
CAGTGtcaagattgtttattctttaaagaaagGTCAAGCATGGGCAACAT
TTGTTGTGCTGAAACATCGACCGACAGTTTCAAAACTAATGGGAAAGTCA
AGAATAACTTTGATGAAGATGATCCATTACAGGGTTCGAACCAGGAACCC
CTTGAACTACAGCATATAAGTGAAAGAGAATATGGTAAGagctcattcat
tcattcattcatccattcattcattcattcctcaatccattcattcattc
attcattcattcattcattcattcattcattcattcattcattcattcat
tcattcattcattcattcattcctcaatccattcattcattcattcattc
atcttTTATTTGATGCTGTTAATGTGCTTCATCGGCCCTAATTCTAGAAA
AACAGGGCATAGTCCGCTAGGGATCGTTGAAAAGGACATATTTTCTGCTG
TTCCTTCATGGAAAAGGCTCTTCTTACCATTACTTTTACATAACTCAAGA
AGAACAGAGACTGATTGAAATGTATGAAAAAGGGTCTGTGATTTTATCTA
TCCACTCTGTAATTTTCTGAATGAGTTTGATTTCTATGCTTGCTGAAGTT
CAGATATGTATGCTAGTGGAAATTCAAGATGGTTCTATGACTTCATCCTA
ATCTTTCGTCTCTTATTCGTTTCAGAGCTTtcagaaaacaaagaaactCT
CTTTCTAAGAAGGTCAGAAGCTGAATCAGCTGCACGGCAGggtaaatatg
aaaaattgtttACCATGTCTATCAGGATGCTTGTTGGTTGTGAAGGAACT
TTTACGATTTTAATCTTCAGCTCATATTTAGGCCCTATTACGGGAGCCCC
ATGgttattttcagtttaaaaaatttcctttctagTAATAGAGAGGTTGA
TAGTAGGTGCTTGAAAGCCTtccattttaatattttatagaGCATTTTTG
ATCTGAATGTTTTTAGTAAGCTTATAAAACACCATAATAAACTATTTCGT
GCTTCAAATATTAATTTTCCAGCTCAAGAAGAAAAAAGGCGAAGACGGCA
CACTTTATATTCACCAGATCGTACAAGcgaaaattcaatgaaaaagacta
aattgaaaaaatcgaaTTCATGTTCGACAATATTTATAGACGATAATACT
GCATCTCAACCGAACTTAAAAATGATGTTAAAATGTGTTTCCTTAGCTAT
TTATTACCACGTGAAAAACAGAGACTATGAAGTTCATTTATTAGATATTT
TTGATGAGAAGCTTCATCCGTTATCGAAAGACCCCGTACCAGAAAATTAT
GGTCGAATTAATCCGGAACATAAACATATTTACCGGTTCCTTAAGACGTT
ATTCAGTGCTGCACAGTTGACGTCTGAATGCGCCATCATTACACTGGTTT
gtaccatagatttataaagcctgaagggctagatgtcgtgcttttgctga
aaagtgtgccgaggttaggtaggaaattctacctaggtcacgtgacatta
caataaaatttcagcgctTAACCAATAAGAAACTTCgcaggtttttgaaa
acaatagcagcaatatttcttgcgatattcacttttttttgctgggaAGA
GCTTAacgcacgacatctagccctttttTATCACTGTCACGTCACTGTTT
TTGATAATGACTCGGGAGAAGTATCTTCAACGTTACAAAATCATTCGGAA
AAATTTCTACTCTACCCAACCccaaatttcttaatttttgctaaaaacaC
TGCAGTGAGTTATTGACAAATAGGCAAAATACTACAGCAAGTATCTTATA
AGTATGAAAAACTTGTTACAGTGGTGACCCAACTGATTTTCTTTCTTGTT
TCATTGTAGGTATATTTAGAACGACTGATAACCTATGCAGAATTAGACCT
TCATCCGAGTAATTGGAAACGAATAGTTCTTGGTGCTGTCTTGTTAGCTT
CCAAAGTATGGGACGACCAAGCAGGTCTGTCGTCGATATCTATTATACAT
TTAGATCTCATGGTTTCAGCTCATCTTTTGAAACTTTCATAACAATTGTC
GAAAACTATGTCGAAAACTATGGTCTTAGAAATACTAATTACTCCAGCCC
AATAACCTTTATCAGTTAcccaataggccatttcacagtcaatggatcat
gggtaatcaggactaaTTACGCCCCGATAACAGCTTCCCGTTGGTTAGAT
GCAAAAATCTTTCAacaatcttttcaaatttttcaaaacattagaCCAAT
AGGAGTCtgttaaattttttataaaaaactcaTCGACACGTTTGTAAGAG
AACTTATACCTGAATGATGTACTATTTTTGAGTACGAAATATTGTATTGt
cactttgttgtttttcatgtattgaaaagtcaaaatgaacatTTTCGGAC
TTTCTTTTATGTTATATTATTTGAAATTGTCAGCTGGATCTGGATTCTAC
AATATGAAAAGAGATGCAATTGTTTGAAGTTTGAAATACTATCAGGCCAA
ATACATTATCGGATTCTGTCAATATTGTATGAAACAGTAAATTCCCCTAC
TAGTGTTGATTTTGAGGAAAGGGAGGGAGGGGAAAGAATTTCTTCAGGAA
AACGATATAAagtattttaaacattttatattttcttcccTTTTTAGTTT
GGAATGTAGATTACTGTCAAATTCTTCGAGATATCACAGTAGAAGACATG
TAAGTCTTATTGATTACCATTTCTTGGGCGGAGATTTATTTGCATATTAT
GTTTCACCTTGGAAAGTGTCAGGGTTGAAAAGTAATTTCACGCAGATGGA
AAGTATACTCTTAACGATTTTTGAAGGATCTACTAAATGAAAAAATAGCC
ATTTTCGAATGAAAGATTAACTTGTAATATCCAAAAGCTCGATTACTACT
AAACCGAATTACTCTTTCTCGCTGACACACAAAAGCCTCTTGCCCCCCTA
AGACTCCTCTTTGGCACAACCTTGCAATCTAAAGCTTTtataatttcatg
aaattttctttttcccttCTTATCCTGCAGGAATGAACTAGAGCGGATGT
TTTTAGAGTTACTTCAATACAACATCAACGTCCCCTCCAGTGTGTACGCT
AAATATTATTTCGATTTACGAGCGCTGGCTGAGAGGAATAACTTCCAATT
ACAAATGCAACCACTGGACCCTAAACGTGCTAGAAAATTAGAGGTTTGTA
ATGCAACTTTAACTTTGACATGGTATTAGCTTCCCCACAATTGAAAGTAC
AAAAAATCAACACGGTAGTTTTGTCAGGTTTTGTTGGCTACACcaaagaa
aaatgtttattttgcacATGAAAAACATGACAAATAGCACCATAGTCTTT
ACACACATAGCTCTTGGCTTCTATTCTCTCAAAATTATTTTAGCAGATAC
TTTATCTGTGAAAATATTTCCTGTACGACTGAaggataatttcaaacttt
tttttttgacgtcacttttacctttcgaagctcctgcagtagcaaaataa
tcgaatttacgtcaaaacacttgaaaggcttctattttatcgaaaatcgt
caaagtggaactcactaagaaacgagatgaaaaatcccggtttttagtga
ggtgctcgctagcaAGGGTAGTGCTATCACGGAATGATCGCCCGGCTCGC
CCCTTACATCTCCGAGCTAAAGTAATCAGCCATATAATTTTATTCCTAAA
GATTCTGCATTTCTTTTACCATTTCAGGCTATATCTCGATTTTGTGATGA
GAAATTCACGTTACCATCAAGGCGTTTACACAGGTCGAACAGTGTGGATG
ATATGCGATCTAAAAGGCGAAGTATTGCTGTTATTTCTTAGATTTCCTAT
CCTAATGTTTTAGCATGAAAGGTTTCATTTACTTTGTGCTCGTAGAAATT
AATGATTCCTTTATGTTTATAGATAAAAGCGAGAGcattttttagcattg
tttCAGAGATTTCAATTTCAGctgaaattttgacttttgaaagtAAATTT
ATTTACAAACAAAATATGCTTTTCTGAAAGTCCTTGTCTGTACTTTTGGC
ATTAATCTCAATATTCTACGAGTCAGGTATACAATAGTTACTTTTCTTTC
TGAAACCTTTCAAatttcatcaatattttaaaatacTATCACCACACCCC
TTTTAGTACTTATTTTATCGCAATATTTTGACACCATGTTATAATATTCC
CCCATTGCCTTGTTCATGTCGTTTTTTAAGTCTTTAAATTAATATGAAAG
ATTTTATTAGTAGTTTAGTGTAATAATTTAAACAGCAGAATTTGAGGACT
TGGAAATTTAAAATACAAAGCCTGGTCATGTTTATAAGATTTTTATGTTC
TCGCAAGTTTAAAAAATTCTCATTGTTTTAgctttgaaaactttttataa
tccatgattttttatgattcttGTATTATTGCACGCTTCAAATTCATCAA
TAATCTGCAGTACTTTAGATGCAAGCATTCAAAggcttttgtaatttttc
aagcATTAGGCTTATTTTATCCAAAAGACCCACTAAATACCTCTCCTGTA
TAATGCACGCTATTAATCGCCAATTGATGATAAGAATCAAGGGTCTACTT
ACCAAATATTAGCACCATTTCATATCTTTTTACGATGCAAGCCGATCTAG
ATCTAACCTTTTGTAAAAATCTTCAGTTAGTCTGTTCTccatttttttct
attgtcaataaaatttaacATTCATTCGCCCTCTAAtagtatttttgttt
ttatcatgtttatcacttttttttgaaatattttatatacTGTGTATTAC
TATTAATTGTTATTTAGATCTTTTTTTGTTCTCATTTTGCAAAAGCAAAG
ACcattttaaaattatgaaaC

Coding sequence (CDS) from alignment at scaffold_282:270560..275530+

>TCONS_00056740 ID=TCONS_00056740|Name=TCONS_00056740|organism=Clytia hemisphaerica|type=CDS|length=7203bp|location=Sequence derived from alignment at scaffold_282:270560..275530+ (Clytia hemisphaerica)
ATGGGCAACATTTGTTGTGCTGAAACATCGACCGACAGTTTCAAAACTAA
TGGGAAAGTCAAGAATAACTTTGATGAAGATGATCCATTACAGGGTTCGA
ACCAGGAACCCCTTGAACTACAGCATATAAGTGAAAGAGAATATGAGCTT
tcagaaaacaaagaaactCTCTTTCTAAGAAGGTCAGAAGCTGAATCAGC
TGCACGGCAGgCTCAAGAAGAAAAAAGGCGAAGACGGCACACTTTATATT
CACCAGATCGTACAAGcgaaaattcaatgaaaaagactaaattgaaaaaa
tcgaaTTCATGTTCGACAATATTTATAGACGATAATACTGCATCTCAACC
GAACTTAAAAATGATGTTAAAATGTGTTTCCTTAGCTATTTATTACCACG
TGAAAAACAGAGACTATGAAGTTCATTTATTAGATATTTTTGATGAGAAG
CTTCATCCGTTATCGAAAGACCCCGTACCAGAAAATTATGGTCGAATTAA
TCCGGAACATAAACATATTTACCGGTTCCTTAAGACGTTATTCAGTGCTG
CACAGTTGACGTCTGAATGCGCCATCATTACACTGGTATATTTAGAACGA
CTGATAACCTATGCAGAATTAGACCTTCATCCGAGTAATTGGAAACGAAT
AGTTCTTGGTGCTGTCTTGTTAGCTTCCAAAGTATGGGACGACCAAGCAG
TTTGGAATGTAGATTACTGTCAAATTCTTCGAGATATCACAGTAGAAGAC
ATGAATGAACTAGAGCGGATGTTTTTAGAGTTACTTCAATACAACATCAA
CGTCCCCTCCAGTGTGTACGCTAAATATTATTTCGATTTACGAGCGCTGG
CTGAGAGGAATAACTTCCAATTACAAATGCAACCACTGGACCCTAAACGT
GCTAGAAAATTAGAGGCTATATCTCGATTTTGTGATGAGAAATTCACGTT
ACCATCAAGGCGTTTACACAGGTCGAACAGTGTGGATGATATGCGATCTA
AAAGGCGAAGTATTGCTGTTATTTCTTAGATGGGCAACATTTGTTGTGCT
GAAACATCGACCGACAGTTTCAAAACTAATGGGAAAGTCAAGAATAACTT
TGATGAAGATGATCCATTACAGGGTTCGAACCAGGAACCCCTTGAACTAC
AGCATATAAGTGAAAGAGAATATGAGCTTtcagaaaacaaagaaactCTC
TTTCTAAGAAGGTCAGAAGCTGAATCAGCTGCACGGCAGgCTCAAGAAGA
AAAAAGGCGAAGACGGCACACTTTATATTCACCAGATCGTACAAGcgaaa
attcaatgaaaaagactaaattgaaaaaatcgaaTTCATGTTCGACAATA
TTTATAGACGATAATACTGCATCTCAACCGAACTTAAAAATGATGTTAAA
ATGTGTTTCCTTAGCTATTTATTACCACGTGAAAAACAGAGACTATGAAG
TTCATTTATTAGATATTTTTGATGAGAAGCTTCATCCGTTATCGAAAGAC
CCCGTACCAGAAAATTATGGTCGAATTAATCCGGAACATAAACATATTTA
CCGGTTCCTTAAGACGTTATTCAGTGCTGCACAGTTGACGTCTGAATGCG
CCATCATTACACTGGTATATTTAGAACGACTGATAACCTATGCAGAATTA
GACCTTCATCCGAGTAATTGGAAACGAATAGTTCTTGGTGCTGTCTTGTT
AGCTTCCAAAGTATGGGACGACCAAGCAGTTTGGAATGTAGATTACTGTC
AAATTCTTCGAGATATCACAGTAGAAGACATGAATGAACTAGAGCGGATG
TTTTTAGAGTTACTTCAATACAACATCAACGTCCCCTCCAGTGTGTACGC
TAAATATTATTTCGATTTACGAGCGCTGGCTGAGAGGAATAACTTCCAAT
TACAAATGCAACCACTGGACCCTAAACGTGCTAGAAAATTAGAGGCTATA
TCTCGATTTTGTGATGAGAAATTCACGTTACCATCAAGGCGTTTACACAG
GTCGAACAGTGTGGATGATATGCGATCTAAAAGGCGAAGTATTGCTGTTA
TTTCTTAGATGGGCAACATTTGTTGTGCTGAAACATCGACCGACAGTTTC
AAAACTAATGGGAAAGTCAAGAATAACTTTGATGAAGATGATCCATTACA
GGGTTCGAACCAGGAACCCCTTGAACTACAGCATATAAGTGAAAGAGAAT
ATGAGCTTtcagaaaacaaagaaactCTCTTTCTAAGAAGGTCAGAAGCT
GAATCAGCTGCACGGCAGgCTCAAGAAGAAAAAAGGCGAAGACGGCACAC
TTTATATTCACCAGATCGTACAAGcgaaaattcaatgaaaaagactaaat
tgaaaaaatcgaaTTCATGTTCGACAATATTTATAGACGATAATACTGCA
TCTCAACCGAACTTAAAAATGATGTTAAAATGTGTTTCCTTAGCTATTTA
TTACCACGTGAAAAACAGAGACTATGAAGTTCATTTATTAGATATTTTTG
ATGAGAAGCTTCATCCGTTATCGAAAGACCCCGTACCAGAAAATTATGGT
CGAATTAATCCGGAACATAAACATATTTACCGGTTCCTTAAGACGTTATT
CAGTGCTGCACAGTTGACGTCTGAATGCGCCATCATTACACTGGTATATT
TAGAACGACTGATAACCTATGCAGAATTAGACCTTCATCCGAGTAATTGG
AAACGAATAGTTCTTGGTGCTGTCTTGTTAGCTTCCAAAGTATGGGACGA
CCAAGCAGTTTGGAATGTAGATTACTGTCAAATTCTTCGAGATATCACAG
TAGAAGACATGAATGAACTAGAGCGGATGTTTTTAGAGTTACTTCAATAC
AACATCAACGTCCCCTCCAGTGTGTACGCTAAATATTATTTCGATTTACG
AGCGCTGGCTGAGAGGAATAACTTCCAATTACAAATGCAACCACTGGACC
CTAAACGTGCTAGAAAATTAGAGGCTATATCTCGATTTTGTGATGAGAAA
TTCACGTTACCATCAAGGCGTTTACACAGGTCGAACAGTGTGGATGATAT
GCGATCTAAAAGGCGAAGTATTGCTGTTATTTCTTAGATGGGCAACATTT
GTTGTGCTGAAACATCGACCGACAGTTTCAAAACTAATGGGAAAGTCAAG
AATAACTTTGATGAAGATGATCCATTACAGGGTTCGAACCAGGAACCCCT
TGAACTACAGCATATAAGTGAAAGAGAATATGAGCTTtcagaaaacaaag
aaactCTCTTTCTAAGAAGGTCAGAAGCTGAATCAGCTGCACGGCAGgCT
CAAGAAGAAAAAAGGCGAAGACGGCACACTTTATATTCACCAGATCGTAC
AAGcgaaaattcaatgaaaaagactaaattgaaaaaatcgaaTTCATGTT
CGACAATATTTATAGACGATAATACTGCATCTCAACCGAACTTAAAAATG
ATGTTAAAATGTGTTTCCTTAGCTATTTATTACCACGTGAAAAACAGAGA
CTATGAAGTTCATTTATTAGATATTTTTGATGAGAAGCTTCATCCGTTAT
CGAAAGACCCCGTACCAGAAAATTATGGTCGAATTAATCCGGAACATAAA
CATATTTACCGGTTCCTTAAGACGTTATTCAGTGCTGCACAGTTGACGTC
TGAATGCGCCATCATTACACTGGTATATTTAGAACGACTGATAACCTATG
CAGAATTAGACCTTCATCCGAGTAATTGGAAACGAATAGTTCTTGGTGCT
GTCTTGTTAGCTTCCAAAGTATGGGACGACCAAGCAGTTTGGAATGTAGA
TTACTGTCAAATTCTTCGAGATATCACAGTAGAAGACATGAATGAACTAG
AGCGGATGTTTTTAGAGTTACTTCAATACAACATCAACGTCCCCTCCAGT
GTGTACGCTAAATATTATTTCGATTTACGAGCGCTGGCTGAGAGGAATAA
CTTCCAATTACAAATGCAACCACTGGACCCTAAACGTGCTAGAAAATTAG
AGGCTATATCTCGATTTTGTGATGAGAAATTCACGTTACCATCAAGGCGT
TTACACAGGTCGAACAGTGTGGATGATATGCGATCTAAAAGGCGAAGTAT
TGCTGTTATTTCTTAGATGGGCAACATTTGTTGTGCTGAAACATCGACCG
ACAGTTTCAAAACTAATGGGAAAGTCAAGAATAACTTTGATGAAGATGAT
CCATTACAGGGTTCGAACCAGGAACCCCTTGAACTACAGCATATAAGTGA
AAGAGAATATGAGCTTtcagaaaacaaagaaactCTCTTTCTAAGAAGGT
CAGAAGCTGAATCAGCTGCACGGCAGgCTCAAGAAGAAAAAAGGCGAAGA
CGGCACACTTTATATTCACCAGATCGTACAAGcgaaaattcaatgaaaaa
gactaaattgaaaaaatcgaaTTCATGTTCGACAATATTTATAGACGATA
ATACTGCATCTCAACCGAACTTAAAAATGATGTTAAAATGTGTTTCCTTA
GCTATTTATTACCACGTGAAAAACAGAGACTATGAAGTTCATTTATTAGA
TATTTTTGATGAGAAGCTTCATCCGTTATCGAAAGACCCCGTACCAGAAA
ATTATGGTCGAATTAATCCGGAACATAAACATATTTACCGGTTCCTTAAG
ACGTTATTCAGTGCTGCACAGTTGACGTCTGAATGCGCCATCATTACACT
GGTATATTTAGAACGACTGATAACCTATGCAGAATTAGACCTTCATCCGA
GTAATTGGAAACGAATAGTTCTTGGTGCTGTCTTGTTAGCTTCCAAAGTA
TGGGACGACCAAGCAGTTTGGAATGTAGATTACTGTCAAATTCTTCGAGA
TATCACAGTAGAAGACATGAATGAACTAGAGCGGATGTTTTTAGAGTTAC
TTCAATACAACATCAACGTCCCCTCCAGTGTGTACGCTAAATATTATTTC
GATTTACGAGCGCTGGCTGAGAGGAATAACTTCCAATTACAAATGCAACC
ACTGGACCCTAAACGTGCTAGAAAATTAGAGGCTATATCTCGATTTTGTG
ATGAGAAATTCACGTTACCATCAAGGCGTTTACACAGGTCGAACAGTGTG
GATGATATGCGATCTAAAAGGCGAAGTATTGCTGTTATTTCTTAGATGGG
CAACATTTGTTGTGCTGAAACATCGACCGACAGTTTCAAAACTAATGGGA
AAGTCAAGAATAACTTTGATGAAGATGATCCATTACAGGGTTCGAACCAG
GAACCCCTTGAACTACAGCATATAAGTGAAAGAGAATATGAGCTTtcaga
aaacaaagaaactCTCTTTCTAAGAAGGTCAGAAGCTGAATCAGCTGCAC
GGCAGgCTCAAGAAGAAAAAAGGCGAAGACGGCACACTTTATATTCACCA
GATCGTACAAGcgaaaattcaatgaaaaagactaaattgaaaaaatcgaa
TTCATGTTCGACAATATTTATAGACGATAATACTGCATCTCAACCGAACT
TAAAAATGATGTTAAAATGTGTTTCCTTAGCTATTTATTACCACGTGAAA
AACAGAGACTATGAAGTTCATTTATTAGATATTTTTGATGAGAAGCTTCA
TCCGTTATCGAAAGACCCCGTACCAGAAAATTATGGTCGAATTAATCCGG
AACATAAACATATTTACCGGTTCCTTAAGACGTTATTCAGTGCTGCACAG
TTGACGTCTGAATGCGCCATCATTACACTGGTATATTTAGAACGACTGAT
AACCTATGCAGAATTAGACCTTCATCCGAGTAATTGGAAACGAATAGTTC
TTGGTGCTGTCTTGTTAGCTTCCAAAGTATGGGACGACCAAGCAGTTTGG
AATGTAGATTACTGTCAAATTCTTCGAGATATCACAGTAGAAGACATGAA
TGAACTAGAGCGGATGTTTTTAGAGTTACTTCAATACAACATCAACGTCC
CCTCCAGTGTGTACGCTAAATATTATTTCGATTTACGAGCGCTGGCTGAG
AGGAATAACTTCCAATTACAAATGCAACCACTGGACCCTAAACGTGCTAG
AAAATTAGAGGCTATATCTCGATTTTGTGATGAGAAATTCACGTTACCAT
CAAGGCGTTTACACAGGTCGAACAGTGTGGATGATATGCGATCTAAAAGG
CGAAGTATTGCTGTTATTTCTTAGATGGGCAACATTTGTTGTGCTGAAAC
ATCGACCGACAGTTTCAAAACTAATGGGAAAGTCAAGAATAACTTTGATG
AAGATGATCCATTACAGGGTTCGAACCAGGAACCCCTTGAACTACAGCAT
ATAAGTGAAAGAGAATATGAGCTTtcagaaaacaaagaaactCTCTTTCT
AAGAAGGTCAGAAGCTGAATCAGCTGCACGGCAGgCTCAAGAAGAAAAAA
GGCGAAGACGGCACACTTTATATTCACCAGATCGTACAAGcgaaaattca
atgaaaaagactaaattgaaaaaatcgaaTTCATGTTCGACAATATTTAT
AGACGATAATACTGCATCTCAACCGAACTTAAAAATGATGTTAAAATGTG
TTTCCTTAGCTATTTATTACCACGTGAAAAACAGAGACTATGAAGTTCAT
TTATTAGATATTTTTGATGAGAAGCTTCATCCGTTATCGAAAGACCCCGT
ACCAGAAAATTATGGTCGAATTAATCCGGAACATAAACATATTTACCGGT
TCCTTAAGACGTTATTCAGTGCTGCACAGTTGACGTCTGAATGCGCCATC
ATTACACTGGTATATTTAGAACGACTGATAACCTATGCAGAATTAGACCT
TCATCCGAGTAATTGGAAACGAATAGTTCTTGGTGCTGTCTTGTTAGCTT
CCAAAGTATGGGACGACCAAGCAGTTTGGAATGTAGATTACTGTCAAATT
CTTCGAGATATCACAGTAGAAGACATGAATGAACTAGAGCGGATGTTTTT
AGAGTTACTTCAATACAACATCAACGTCCCCTCCAGTGTGTACGCTAAAT
ATTATTTCGATTTACGAGCGCTGGCTGAGAGGAATAACTTCCAATTACAA
ATGCAACCACTGGACCCTAAACGTGCTAGAAAATTAGAGGCTATATCTCG
ATTTTGTGATGAGAAATTCACGTTACCATCAAGGCGTTTACACAGGTCGA
ACAGTGTGGATGATATGCGATCTAAAAGGCGAAGTATTGCTGTTATTTCT
TAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035746XLOC_035746Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056740-proteinTCONS_00056740-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056740-exon-scaffold_282-1491911889:270560..270843TCONS_00056740-exon-scaffold_282-1491911889:270560..270843Clytia hemisphaericaexon
TCONS_00056740-exon-scaffold_282-1510915933:270560..270843TCONS_00056740-exon-scaffold_282-1510915933:270560..270843Clytia hemisphaericaexon
TCONS_00056740-exon-scaffold_282-1575043694:270560..270843TCONS_00056740-exon-scaffold_282-1575043694:270560..270843Clytia hemisphaericaexon
TCONS_00056740-exon-scaffold_282-1491911889:271335..271400TCONS_00056740-exon-scaffold_282-1491911889:271335..271400Clytia hemisphaericaexon
TCONS_00056740-exon-scaffold_282-1510915933:271335..271400TCONS_00056740-exon-scaffold_282-1510915933:271335..271400Clytia hemisphaericaexon
TCONS_00056740-exon-scaffold_282-1575043694:271335..271400TCONS_00056740-exon-scaffold_282-1575043694:271335..271400Clytia hemisphaericaexon
TCONS_00056740-exon-scaffold_282-1491911889:271682..272055TCONS_00056740-exon-scaffold_282-1491911889:271682..272055Clytia hemisphaericaexon
TCONS_00056740-exon-scaffold_282-1510915933:271682..272055TCONS_00056740-exon-scaffold_282-1510915933:271682..272055Clytia hemisphaericaexon
TCONS_00056740-exon-scaffold_282-1575043694:271682..272055TCONS_00056740-exon-scaffold_282-1575043694:271682..272055Clytia hemisphaericaexon
TCONS_00056740-exon-scaffold_282-1491911889:272519..272633TCONS_00056740-exon-scaffold_282-1491911889:272519..272633Clytia hemisphaericaexon
TCONS_00056740-exon-scaffold_282-1510915933:272519..272633TCONS_00056740-exon-scaffold_282-1510915933:272519..272633Clytia hemisphaericaexon
TCONS_00056740-exon-scaffold_282-1575043694:272519..272633TCONS_00056740-exon-scaffold_282-1575043694:272519..272633Clytia hemisphaericaexon
TCONS_00056740-exon-scaffold_282-1491911889:273307..273358TCONS_00056740-exon-scaffold_282-1491911889:273307..273358Clytia hemisphaericaexon
TCONS_00056740-exon-scaffold_282-1510915933:273307..273358TCONS_00056740-exon-scaffold_282-1510915933:273307..273358Clytia hemisphaericaexon
TCONS_00056740-exon-scaffold_282-1575043694:273307..273358TCONS_00056740-exon-scaffold_282-1575043694:273307..273358Clytia hemisphaericaexon
TCONS_00056740-exon-scaffold_282-1491911889:273690..273852TCONS_00056740-exon-scaffold_282-1491911889:273690..273852Clytia hemisphaericaexon
TCONS_00056740-exon-scaffold_282-1510915933:273690..273852TCONS_00056740-exon-scaffold_282-1510915933:273690..273852Clytia hemisphaericaexon
TCONS_00056740-exon-scaffold_282-1575043694:273690..273852TCONS_00056740-exon-scaffold_282-1575043694:273690..273852Clytia hemisphaericaexon
TCONS_00056740-exon-scaffold_282-1491911889:274387..275530TCONS_00056740-exon-scaffold_282-1491911889:274387..275530Clytia hemisphaericaexon
TCONS_00056740-exon-scaffold_282-1510915933:274387..275530TCONS_00056740-exon-scaffold_282-1510915933:274387..275530Clytia hemisphaericaexon
TCONS_00056740-exon-scaffold_282-1575043694:274387..275530TCONS_00056740-exon-scaffold_282-1575043694:274387..275530Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_282supercontigscaffold_282:270560..275530 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
27.5484	28.9947	15.5249	11.8688	66.2998	50.7563	51.116	50.6881	34.2382	37.6127	23.6957	23.1973	18.7921	17.6716	16.2048	14.9448	38.6496	34.1994	15.7847	24.4522	33.5811	30.1656	40.3194	38.0567	30.2234	31.91	33.6372	26.1654	33.3968	36.7648
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013763Cyclin-like
IPR006671Cyclin_N
IPR012399Cyclin_Y
Vocabulary: Molecular Function
TermDefinition
GO:0019901protein kinase binding
Vocabulary: Biological Process
TermDefinition
GO:0000079regulation of cyclin-dependent protein serine/threonine kinase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity
molecular_function GO:0019901 protein kinase binding
Blast
[Close]
BLAST of TCONS_00056740 vs. Swiss-Prot (Human)
Match: CCNY (Cyclin-Y OS=Homo sapiens GN=CCNY PE=1 SV=2)

HSP 1 Score: 353.599 bits (906), Expect = 1.122e-114
Identity = 173/246 (70.33%), Postives = 204/246 (82.93%), Query Frame = 2 
Query:  434 KKSNSCSTIFIDDNTASQPNLKMMLKCVSLAIYYHVKNRDYEVH-LLDIFDEKLHPLSKDPVPENYGRINPEHKHIYRFLKTLFSAAQLTSECAIITLVYLERLITYAELDLHPSNWKRIVLGAVLLASKVWDDQAVWNVDYCQILRDITVEDMNELERMFLELLQYNINVPSSVYAKYYFDLRALAERNNFQLQMQPLDPKRARKLEAISRFCDEKFT-LPSRRLHRSNSVDDMRSKRRSIAVIS 1165
            +K +SCSTIF+DD+T SQPNLK  +KCV+LAIYYH+KNRD +   LLDIFDE LHPLSK  VP +Y + NPE K IYRF++TLFSAAQLT+ECAI+TLVYLERL+TYAE+D+ P+NWKRIVLGA+LLASKVWDDQAVWNVDYCQIL+DITVEDMNELER FLELLQ+NINVPSSVYAKYYFDLR+LAE NN    ++PL  +RA KLEAISR C++K+  L      RS S D++   R S A+IS
Sbjct:   96 RKYSSCSTIFLDDSTVSQPNLKYTIKCVALAIYYHIKNRDPDGRMLLDIFDENLHPLSKSEVPPDYDKHNPEQKQIYRFVRTLFSAAQLTAECAIVTLVYLERLLTYAEIDICPANWKRIVLGAILLASKVWDDQAVWNVDYCQILKDITVEDMNELERQFLELLQFNINVPSSVYAKYYFDLRSLAEANNLSFPLEPLSRERAHKLEAISRLCEDKYKDLRRSARKRSASADNLTLPRWSPAIIS 341
The following BLAST results are available for this feature:
BLAST of TCONS_00056740 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CCNY1.122e-11470.33Cyclin-Y OS=Homo sapiens GN=CCNY PE=1 SV=2[more]
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