TCONS_00056758 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056758
Unique NameTCONS_00056758
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2539

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056758 ID=TCONS_00056758|Name=TCONS_00056758|organism=Clytia hemisphaerica|type=transcript|length=2539bp
TAATGAACAGAACTGTAACTGTAAAGACTGTACGCGCAATAAAGACTCTG
TAGAAGGCTCAATACAAATGATACTCCAAGATTTTACAAATAAAGATAAC
AGGCTGACTACTGACCCTAAAGATTTAGCAAAAGTACTTGCAAATGAACT
TAAAAAACTGTCATTAAATAACGAGGAAAAAGTAAAGGAGATAGCAATAA
GCAACCAAAGACTTCAAACTGAATTACAACTCGTCAAGATAGAATCTTCC
AAGAAGCTTTCTGAAGCTAAAGATACAAAAATGCACATAGAACAAGAGCT
TGAGCTATTACACAGAGAACGACATAAGGAGATGGAAGTTTTCTCTCAAT
TAAAACACAACCTTGAACAAGATATAtcgaatcaaaagaaaactggcAAT
CCACACGAAATGGAAACATTGTATAAAGAGTTAACACTTGCAAAAACCCA
TTTGCAACAAGCAGAGATCGATCGTGAAAATCTACGCAAACAACTAGAAT
GGTTCATGAAGAATCGGAAAAATGTGATGACCGATAACTGGACCCCATTT
CCAACCATGGCGCGCCAGTTTAGTGATTCTGAAGAAGAAGCAGAAGACTG
TCGAGAGAAATCATCAAACGAGGGACCATCCAGTAAATTGATGAGGCTGT
CCGAAGAATCAGATATCGAAGTGGAAAATTAGGGAGGAAAGatctTGTAT
CGTTACTGTTCCGTTCAGAAAGAGTTCTTTGGTTTTATATAATCGATTTG
TTCTATTGGGTCATcaatatagtacgtacgcaaaaaatttccaaatattt
gataCCCCATCCCCTCTTGTACggagagaacaatagaaatgacgtcattt
aaacaatagacaTACGCTTTTGATAAgtccccctctcccccttcactgtg
taGGTACTATATTGATAGCCCGTATGTTGTAATGTAATTTTTGGatgttg
tttacattttgtttcTCCCTCGGTATTTTTAAcaaccttttttttcttct
gggCGTCTCAATTTACAGTTATAGAGAGAAAGAGACGATCtaaaagaagt
atttttttatcAACCGATAAAAAAGGTCTACTTTGATGTATTAGTACAAA
AACTCGGTTCAAATCAGCTGGAGTCTATGAAATCTCCTTGGAAACTTTGT
TCTtgcattaaaaataaatcactaaaaagtttttcaacatTACTAAAAAA
AGAGGAGCTTTTGAAccggttttttttctttcttttctcttAAAACTCGA
GATTTAAGGATTTGTGTGATAGCTCCTACTGTGCAAGAGAATttgatcaa
aagaaaactctatctactgtttttttctctttctcctaTATCTTTCAATA
GAGCTAACTTTGTCATTATTCTTTGACATAGATTCAGTCTTATTACTTGA
CATACATAAATCCTTTCTATAGACCTTCAGCCCAATAAACACCAGTTTTC
ATATTATCGCTTCTTTTTATCActccataatttttttcttcttaccTTTA
TTTTTTGTGTCTACtaattttttttacgttttttttatttttgttcgcga
aaaaagtgaaattttttatgTTCATATTTTCTATAGAGACGTAAAATgag
atttattttgaaagcttttgaaaaatatgtataTCTATTAGTATATATAT
AGCTGGCTCTATTTTTACATAATGTTTAAGGCAGGACGATTCTCTTTCTC
AGGCCTTAATTCACATATTTTCTGGCGGCTAACTAAATAGGTATGGACAA
AAACTCGTTATACacctaaataaataaaaatcttgGATACGCCTATTTCA
AATTGACTAAAGCACAGATATTAAGTGATTTTATCTTGGAGCAAAGAGAC
AAGGGATTGAATGTAAAATTTAATCTTGAATTTAATTCAACTATCATCAA
AACGTAGGTGATTATGTATTTTATCACCAGGTCTGTCGTCGCGTAGAAAG
ATGAGGTCTAGTGATAACTGTCTCCCTTTTCACTGTAACATCGCAGCAAG
ACTGTGAAAGCCTTTTCCCAAGGACGTAATAGAGTATACTGTGCTTTAGA
GAATTTGTGTCAACTGTAGTGAAACAGTTGAGGTTTTTTATttaagattt
attttttatgtacaAATAACTATAtatattataaaatttttgcATAGACG
TATAGGTCCATTCAATATAGACGACGATCTTGAGAAATGCAAAAACAGTG
AGCTGGCTGGGAATTTGCATAGTTATACTCCTTTTTGACTTACGTTTAAa
agaaacttaaattttgaaagtaaGAGAAGTTTGCATACAAACTGTACGGT
ATGGTTTGATGTTTTGATATTGAATCATTTCGTTAAGTTTAAATCTGTTG
AGGTATGCCAAACACGTGAGTGCAGTAAAGCCTTTCGTATCGCCCTCCCC
TTTTTTCCTTGTCGTTGAAATGATTTCTCTATCAAAGGGGTATGTATGAC
AACTTTCCAAAACTGTAAATTGATATTATATCTTATACTACTACTGTTGt
taaatacaaaataaagaacaatGGATAATTaaatgaaaa
Run BLAST on NCBI

transcript from alignment at scaffold_282:54131..57764-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056758 ID=TCONS_00056758|Name=TCONS_00056758|organism=Clytia hemisphaerica|type=transcript|length=3634bp|location=Sequence derived from alignment at scaffold_282:54131..57764- (Clytia hemisphaerica)
TAATGAACAGAACTGTAACTGTAAAGACTGTACGCGCAATAAAGACTCTG
TAGAAGGCTCAATACAAATGATACTCCAAGATTTTACAAATAAAGATAAC
AGGCTGACTACTGACCCTAAAGATTTAGCAAAAGTACTTGCAAATGAACT
TAAAAAACTGTCATTAAATAACGAGGAAAAAGTAAAGGAGATAGCAATAA
GCAACCAAAGACTTCAAACTGAATTACAACTCGTCAAGATAGAATCTTCC
AAGAAGCTTTCTGAAGCTAAAGATACAAAAATGCACATAGAACAAGAACT
TGAGTTNTAAAAAGCTGTCTGAAGCTAAAGACACAAAAATGCACATAGAA
CAAGAGCTTGAGCTATTACACAGAGAACGACATAAGGTATAATATCCTAT
AATGTGTTGTTCATTCTACTTTATTCATTCTTTTGATTTTTCACCTGCAT
CCTAGTGAATCTCTGCACAAATTTGTGGTTGGCTCTAGTAATGAGAGTTT
CAAATTATTATTCCATGATTATTTCTTGAACCATATATGCTTGAACTGAA
CCCAATTCTAAAGCCTGTAAGACCATTATTGCCATTGTAATGTAATATTT
TCTTATGTGATTTTTCTACAGGAGATGGAAGTTTTCTCTCAATTAAAACA
CAACCTTGAACAAGATATATCGAATCAAAAGAAAACTGGCAATCCACACG
AAATGGAAACATTGTATAAAGAGTTAACACTTGCAAAAACCCATTTGCAA
CAAGCAGAGATCGATCGTGAAAATCTACGCAAACAACTAGAATGGTTCAT
GAAGAATCGGAAAAATGTGATGACCGATAACTGGACCCCATTTCCAACCA
TGGCGCGCCAGTTTAGTGATTCTGAAGAAGAAGCAGAAGACTGTCGAGAG
AAATCATCAAACGAGTATGTTTTTTTCCTCTCCAACTACTTCTTTAGAAC
CATTTTCTTGTTTTGTACCAGTTCTTCATCCCAAATCTTTTGAATTGTAC
AATATTAGGCTCATTGCCAATTAAGATAACAATGTACCAGTGTTTGTGAA
CAGGCTTGTCGAAACATTTTAGGTTCATTGCCAATGAAAAAGTATTAATA
GGGTAGGTTGCTGTATCATTTGTAAGATCTGGAGAGACCTGGTAGATCTG
GGTAGGTTGCAGTAACATTTTTTTATATTGTGCAATTATATTTTCAATTA
CTTTATTTTTTCCTGTTCTAGGGGACCATCCAGTAAATTGATGAGGCTGT
CCGAAGAATCAGATATCGAAGTGGAAAATTAGGGAGGAAAGGTAAGTTTG
AGTAAACTTTCTTTGTCAAATGGATTTTTTCTCTCTTCTCGTATTACAAC
TCATATAGTGTTGAATTAGTAATGGACTGCGAGAAAACTTAAACGCTCAG
CGCGTTCACAAAATGGTATTGACCTTTCAACGTGACAAAACAAAAGTAAA
GAGAGGGAGAGCAAAAAAGTAATCTCTTCTTTGGAAATTGATGTTTTTAG
AACATTACCTTCATGAAGATTATTTTTTAATATTTGACAGTCATTTTGTA
AACTATATACCCTGTTAAAAATGAAAATACTTTAGTGTAGCTTCACTAGA
TTTACTGTGAAAATTGACACATTCTTCTAATATCTTTGTTTTAAAATATT
CTTTTTTGGAGTTTTGGAAAAACTCGATATTCCTCACAATGTGCTTTATG
ATGTCAATATAATTTGTTTTTCTTTTTTTTCAGATCTTGTATCGTTACTG
TTCCGTTCAGAAAGAGTTCTTTGGTTTTATATAATCGATTTGTTCTATTG
GGTCATCAATATAGTACGTACGCAAAAAATTTCCAAATATTTGATACCCC
ATCCCCTCTTGTACGGAGAGAACAATAGAAATGACGTCATTTAAACAATA
GACATACGCTTTTGATAAGTCCCCCTCTCCCCCTTCACTGTGTAGGTACT
ATATTGATAGCCCGTATGTTGTAATGTAATTTTTGGATGTTGTTTACATT
TTGTTTCTCCCTCGGTATTTTTAACAACCTTTTTTTTCTTCTGGGCGTCT
CAATTTACAGTTATAGAGAGAAAGAGACGATCTAAAAGAAGTATTTTTTT
ATCAACCGATAAAAAAGGTCTACTTTGATGTATTAGTACAAAAACTCGGT
TCAAATCAGCTGGAGTCTATGAAATCTCCTTGGAAACTTTGTTCTTGCAT
TAAAAATAAATCACTAAAAAGTTTTTCAACATTACTAAAAAAAGAGGAGC
TTTTGAACCGGTTTTTTTTCTTTCTTTTCTCTTAAAACTCGAGATTTAAG
GATTTGTGTGATAGCTCCTACTGTGCAAGAGAATTTGATCAAAAGAAAAC
TCTATCTACTGTTTTTTTCTCTTTCTCCTATATCTTTCAATAGAGCTAAC
TTTGTCATTATTCTTTGACATAGATTCAGTCTTATTACTTGACATACATA
AATCCTTTCTATAGACCTTCAGCCCAATAAACACCAGTTTTCATATTATC
GCTTCTTTTTATCACTCCATAATTTTTTTCTTCTTACCTTTATTTTTTGT
GTCTACTAATTTTTTTTACGTTTTTTTTATTTTTGTTCGCGAAAAAAGTG
AAATTTTTTATGTTCATATTTTCTATAGAGACGTAAAATGAGATTTATTT
TGAAAGCTTTTGAAAAATATGTATATCTATTAGTATATATATAGCTGGCT
CTATTTTTACATAATGTTTAAGGCAGGACGATTCTCTTTCTCAGGCCTTA
ATTCACATATTTTCTGGCGGCTAACTAAATAGGTATGGACAAAAACTCGT
TATACACCTAAATAAATAAAAATCTTGGATACGCCTATTTCAAATTGACT
AAAGCACAGATATTAAGTGATTTTATCTTGGAGCAAAGAGACAAGGGATT
GAATGTAAAATTTAATCTTGAATTTAATTCAACTATCATCAAAACGTAGG
TGATTATGTATTTTATCACCAGGTCTGTCGTCGCGTAGAAAGATGAGGTC
TAGTGATAACTGTCTCCCTTTTCACTGTAACATCGCAGCAAGACTGTGAA
AGCCTTTTCCCAAGGACGTAATAGAGTATACTGTGCTTTAGAGAATTTGT
GTCAACTGTAGTGAAACAGTTGAGGTTTTTTATTTAAGATTTATTTTTTA
TGTACAAATAACTATATATATTATAAAATTTTTGCATAGACGTATAGGTC
CATTCAATATAGACGACGATCTTGAGAAATGCAAAAACAGTGAGCTGGCT
GGGAATTTGCATAGTTATACTCCTTTTTGACTTACATTTAAAAGAAACTT
AAATTTTGTAAGTAAGAGAATTTTGCATACAAGCNTACGTTTAAAAGAAA
CTTAAATTTTGAAAGTAAGAGAAGTTTGCATACAAACTGTACGGTATGGT
TTGATGTTTTGATATTGAATCATTTCGTTAAGTTTAAATCTGTTGAGGTA
TGCCAAACACGTGAGTGCAGTAAAGCCTTTCGTATCGCCCTCCCCTTTTT
TCCTTGTCGTTGAAATGATTTCTCTATCAAAGGGGTATGTATGACAACTT
TCCAAAACTGTAAATTGATATTATATCTTATACTACTACTGTTGTTAAAT
ACAAAATAAAGAACAATGGATAATTAAATGAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035754XLOC_035754Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056758-exon-scaffold_282-1575043694:57479..57764TCONS_00056758-exon-scaffold_282-1575043694:57479..57764Clytia hemisphaericaexon
TCONS_00056758-exon-scaffold_282-1575043694:57379..57420TCONS_00056758-exon-scaffold_282-1575043694:57379..57420Clytia hemisphaericaexon
TCONS_00056758-exon-scaffold_282-1575043694:56851..57143TCONS_00056758-exon-scaffold_282-1575043694:56851..57143Clytia hemisphaericaexon
TCONS_00056758-exon-scaffold_282-1575043694:56474..56543TCONS_00056758-exon-scaffold_282-1575043694:56474..56543Clytia hemisphaericaexon
TCONS_00056758-exon-scaffold_282-1575043694:54480..56031TCONS_00056758-exon-scaffold_282-1575043694:54480..56031Clytia hemisphaericaexon
TCONS_00056758-exon-scaffold_282-1575043694:54131..54426TCONS_00056758-exon-scaffold_282-1575043694:54131..54426Clytia hemisphaericaexon
TCONS_00056758-exon-scaffold_282-1510915933:57479..57764TCONS_00056758-exon-scaffold_282-1510915933:57479..57764Clytia hemisphaericaexon
TCONS_00056758-exon-scaffold_282-1510915933:57379..57420TCONS_00056758-exon-scaffold_282-1510915933:57379..57420Clytia hemisphaericaexon
TCONS_00056758-exon-scaffold_282-1510915933:56851..57143TCONS_00056758-exon-scaffold_282-1510915933:56851..57143Clytia hemisphaericaexon
TCONS_00056758-exon-scaffold_282-1510915933:56474..56543TCONS_00056758-exon-scaffold_282-1510915933:56474..56543Clytia hemisphaericaexon
TCONS_00056758-exon-scaffold_282-1510915933:54480..56031TCONS_00056758-exon-scaffold_282-1510915933:54480..56031Clytia hemisphaericaexon
TCONS_00056758-exon-scaffold_282-1510915933:54131..54426TCONS_00056758-exon-scaffold_282-1510915933:54131..54426Clytia hemisphaericaexon
TCONS_00056758-exon-scaffold_282-1491911889:57479..57764TCONS_00056758-exon-scaffold_282-1491911889:57479..57764Clytia hemisphaericaexon
TCONS_00056758-exon-scaffold_282-1491911889:57379..57420TCONS_00056758-exon-scaffold_282-1491911889:57379..57420Clytia hemisphaericaexon
TCONS_00056758-exon-scaffold_282-1491911889:56851..57143TCONS_00056758-exon-scaffold_282-1491911889:56851..57143Clytia hemisphaericaexon
TCONS_00056758-exon-scaffold_282-1491911889:56474..56543TCONS_00056758-exon-scaffold_282-1491911889:56474..56543Clytia hemisphaericaexon
TCONS_00056758-exon-scaffold_282-1491911889:54480..56031TCONS_00056758-exon-scaffold_282-1491911889:54480..56031Clytia hemisphaericaexon
TCONS_00056758-exon-scaffold_282-1491911889:54131..54426TCONS_00056758-exon-scaffold_282-1491911889:54131..54426Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_282supercontigscaffold_282:54131..57764 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.315553	0.534943	0.322983	0.21705	0	0.000895481	1.55427	0.094822	0.330963	0.16242	0.636453	1.05841	1.83601	2.62985	1.58349	2.55862	1.56748	1.97306	2.98485	1.96981	2.99735	2.81289	2.72806	5.09015	5.27954	8.52196	2.67137	3.53919	2.28531	2.19542
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056758 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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