TCONS_00056780 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056780
Unique NameTCONS_00056780
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2205

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056780 ID=TCONS_00056780|Name=TCONS_00056780|organism=Clytia hemisphaerica|type=transcript|length=2205bp
CACTCTAAAATTTgatgtcattcttttttttcagattttggcGCATTTGA
ACGTATTTTGTGTGTTATTATGTTTGGCGATGGGGCATTCTTATCAATAT
TATTTTCTGACGCCACTCGtcactttttggttctttgtggTCTACGTCAC
CATGGCATTGTTTCCAAGGGTTACCAGCAATATCGTCGAAGagAATCCAA
AGCGGTTGTTTTTGATGGCCGGAAAATTGGTCATTCTCtttgtatttgtt
tttgttgtttgggCACACGAGaatgtttGCGATTGGTTGTTTTCGAGAAT
TGTCATCAAAGAGCTCTTTGTAGATGTCAATGGATCTGTTGAAAAATGGC
GTATCCATTCAGGTCTCCACCGATATGCTGTAATATTCGGTATGCTTTGC
GGATACATATATGTCAATCTGAAGAGATTAGACCTGATCAAAGATACTGA
TAATGATGGCAATATATTACCGTCAACTAAGTATACTATTGCAACCATGG
TTGTGGCACTGTGCGCCCTCCTGGGTTATGAGATACAAGCTTTTACATGT
CATTCAAAAAGCCTTTGTGATCACACTCACTCCATAGCATCTTGTGTGCC
GATTTTGGCATTTGTGTTGCTTAGAAATTTACCAGGTTTTCTGAGGACAA
GATACAGTTTACTTTTCGCCTGGATTGGTGACATGTCACTCGAACTTTTC
ATTGGTCAGTACCATATTTGGTTGAGCAATGATGGATTCGGTGTTCACGT
TCTCATCCCTGGTTTTCCCACACTCAACGCCATCGTTACCACGTTCACAT
TCGTGTGTACGATACACGAAGTCAAACAACTCTGCTCAACACTTGCTGAC
TTGTTGGTCACAAAGGATGTCCGGATCATGCTGAGAAGGcttatcatttt
catcattttaatgTTTATTGTTTGGTGGCATAAAACACATGAAAAGAAAC
CCGTATTTTACGTTTGATGATTTGGTTGGTTGGTTCGTTTCAATCTTATT
CTCTGGCTTAGACGTGGGCAGAAAGTTGACAGTCTTTaattaaaaaagat
tgaaagaaagattGAATTGACgacaaaagagggcaatgcattgactttag
acagccaactttcTCTCCACTTTAATTCAAGAGGTAAGGTGAAAAGTGGC
CTGTCTAATAAACAGAGTTAACACTACTATGATTAGTTTGGGCTCGAGTC
TATCAATCATGCTTAAATTTGTGAAGTCATTGTATTGACGTGACAATACC
TTACTGTAATTATCGATtacgttttttagtttttgagaaGTTTGACTGAA
GTTCTTCACAACCGGGATATATCCCAACTTATCTTTCccgaaaatgtgaa
aatttgaCCCTTGTAGATTCAAACCTAGTCCCCTTCAGAatgattgataa
aaatattttgaaaatactcGTGGATTTTATGGTCCTTGACTTGGAAATGT
TACTCAACTAAAACCGATACCTAGTTTTGAAAGATTCGCATTTTAACTAC
GGGTAGTAAGGGCAAAGCTTCGTTGGGGAAAAGTCCCGACGTGCCTCTGA
TGTAGATTGTTCAGATATTGTCAATTTCTTTTGAGGAAAAGTCCCTAGAT
AAAATTAAGTCTTATCCTGTTCATGGCAGTGCATGGCGAAAAAGTGTGAA
GCAAGGAACTACCATTTAATGACTAAAAAAACTCTGTAAAATAGCTATCC
CTCGTCACATCATGAAGTCAAattccttttattttttaaaaaccaCTTTT
CGTCCGTTTTCAACTTAGAATAGACAAAAATGTCAACCCTATATTCATTC
ATTCTGAGAGCCATGTACTGTTATGTTTTATGTTTGAATTGGCAAATcat
tttattattcaaaatgCAGAATTTTATTCACATGTAAATACAAAGATGCA
ATTGTGTATTGCGTACGTAACAattaaattactttttaattttcattgtt
aATGAACTATagttattttgtgtttttttttttgtagatttttaaatgaa
atagacgatttaatttttgtgttaaatttaaatttacctCGATTAGAATT
TCTATTGATTTAACTCCGCGAATTTAAGGCATAAAAGGCATAAAAGCTTG
TTTTCGGAAAGTACTTAACAGTTAAACTGTTCATCACGAAATCATATTCC
GACTTGTGCCGACCAATTgcgattctattcagcgcgcaatcaacgcaaag
aaaag
Run BLAST on NCBI

protein sequence of TCONS_00056780-protein

>TCONS_00056780-protein ID=TCONS_00056780-protein|Name=TCONS_00056780-protein|organism=Clytia hemisphaerica|type=polypeptide|length=321bp
TLKFDVILFFQILAHLNVFCVLLCLAMGHSYQYYFLTPLVTFWFFVVYVT
MALFPRVTSNIVEENPKRLFLMAGKLVILFVFVFVVWAHENVCDWLFSRI
VIKELFVDVNGSVEKWRIHSGLHRYAVIFGMLCGYIYVNLKRLDLIKDTD
NDGNILPSTKYTIATMVVALCALLGYEIQAFTCHSKSLCDHTHSIASCVP
ILAFVLLRNLPGFLRTRYSLLFAWIGDMSLELFIGQYHIWLSNDGFGVHV
LIPGFPTLNAIVTTFTFVCTIHEVKQLCSTLADLLVTKDVRIMLRRLIIF
IILMFIVWWHKTHEKKPVFYV
Run BLAST on NCBI

transcript from alignment at scaffold_282:316488..323215-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056780 ID=TCONS_00056780|Name=TCONS_00056780|organism=Clytia hemisphaerica|type=transcript|length=6728bp|location=Sequence derived from alignment at scaffold_282:316488..323215- (Clytia hemisphaerica)
CACTCTAAAATTTGATGTCATTCTTTTTTTTCAGATTTTGGCGCATTTGA ACGTATTTTGTGTGTTATTATGTTTGGCGATGGGGCATTCTTATCAATAT TATTTTCTGACGCCACTCGTCACTTTTTGGTTCTTTGTGGTCTACGTCAC CATGGCATTGTTTCCAAGGGTTACCAGCAATATCGTCGAAGGTACATACT TCATCTGTTACTTTTAAAACAGGAAAACTTATTCGTGGAGAATTCTTCGT CGTTTAAAATTTAATTCTTTGTCACTCTTTTGAAAATCTTTGTCACAGTT TCCTTGAAGTTGACCAGAAAGTGTTTTCGCCTAAGAAACTTCTTGGTTAA AAGTTTTATTACTTTTCCCCGACAATCTCCACTTCCCCCTGTACGCATTT TTGGACCTACCTCCGGGTGCCCCGGTGGAGGTTCTATAAATTAACCCATG TCCGTTCGTTCGTTCGTTCGTCCGTCTGTCTGTTACCAGCTTTTCTCAGG ATTGGCTCATTAGTTTTTTCTGATTTTTTGCACAATGATGCAAAATGGCA ATGCCCAGAACGTGACGGAGCCCGATTTTTGAGAGAAAATTTATTTGGGC AAATTTTGGCCAAAAACTACCTAAAAATAGGGTTTTTTGGACTTTCTACA AAATCCTGTCATATCTTTTTTCTGATTTTTTGTACAAAGATGGAGGGCAA GATTCTCTAAAGAATGGCTGAAGTGGTTTTTCCCGGAAAATTCTTATTCG CCTTAAAAAACGGATTTTCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNAAAATCCTGTCATTACTTTTTTCTGATTTTTTGTACAAA GATGGAGGGCAAGATTCTTTAAAGAATGGCTGAAGTGGTTTTTCCTGGAA AATTCTTATTCGCCCTAAAAGACGGATTTTCGTATTTTGAGGAAATTCCC TTTCCAAATAAGAAAATATAGCTTTTCTCAATGTTGACTCATAATTTTTT TCTGATTTTTTGCACAATGATGCAAAATGACAGCACGAACTTTTTTTCAA AAGGCACGAACTTTTTTTTCAAAGGCACGAAGGGCACGAAGGCACGAAAG GCACGAACAAAATCACACTCTTGCACAATGATGCAAAATGACAATGCCCA AAATGGGACGGAGCCAGATTTTCAAGGAAAATTTTTTTGGGCAAATTTGG GCCAAAAACAGCTTAAATGGTTTTTTGGGTCTGAATGGTTTAAGTGATTT TCGTATTTGGGGACATTCCTTTTTACCATTTTACATTATTCAACACACAA GCTTTATTTTTCCATTCTGAATTTTTGTACAATTATTGTCAATTTTTTCT TATTTTCATCTGATGTTAATCATTAGGTAGGTCCATTCAGCATGTTGCTT GTTTGTTTTTATGTGCTGTTTTATAACCTATCTTACCCACTGACGTAATA GCGAATTCAAGTCTAAAAATTGTAAACCGAACAAAGAGCGGTTCATAGAG CCCCATGTGCTCGCCTGCGAACTTGTATAGCCTTAATGTTTATTTATTAA GTCTATTTTACTAATCTTTCTGAAGCGGAGACAGTTTGTTTTAAATTTGT CTAGACGTGACCGATTGAGCCTAGCGGTTTTGCAGATCAAAACTGCGGGT TATTCTAAATCGTCAGTCACTCCATCGTCCTAAAAAAACAGATACATATG TCTTACTAATCTTTTTACTTACTGAAGTGTAGCCCAAGACAGGTTTTCTG TACTCGTTAGTGTTCTCCTGTCTCCATTTCACAGGTGGCTGTTTTTAAAT GGTGTAGTATTCTAAATTCTTGATAAGTGATTTCTAGACTTTTGTTTCTT CTTTTTTCAGAGAATCCAAAGCGGTTGTTTTTGATGGCCGGAAAATTGGT CATTCTCTTTGTATTTGTTTTTGTTGTTTGGGCACACGAGGTATGATTCC TTTTCAATTTAAAGGTTACGTTGCAGACCTCAGGTTTTTCATGTCACGTA GCTCTCAACACTAGCGAGTTTATGTATCTGGAATTCTCTACGGCTACGGT TGAAGTGGCGAGGGTAATGGCGAGTAAGGCAAGTAATGGCGGGTGAAAGC AAGTTCGATATTTGACGTACGACATTATGTCGACTTTGCTTCTACGGTTT TTTGGCGTTTTTCCCGTACAAAGCAAAGTAGACAACGACATGTCGCCTTT GGTGACGACCCGTACGGAAAGCCCCGCAACCGTAGCCGTAGAATATCTCC GATACATAATCTCGCTATTGCCGAGTTTATGTATGTGTCTTTTTTAGCGA TGGAGACGGTAAGGTTCTAATTTGTCTATATCCTACCCAGCCGAGGACGA AGGTAAATCAGTATTTTTACCGTCCTCGATTTTGCGGGTCAGAACTGCGG GTTATTCCTAATCGCTTTAGTCACTTTACCGTCCTCAAAAGTGCATATAC ATAAACTCGCTATTATGAAAGCAAAGGTTCGATTTGCGTAAGGGGTCGCC TCTACAGAGAACGTTTGCTTCCATAATTGCGGAACTTAACCAAATATGAA AAACCTTTATAAGAGGTTCGAAACACAACGATACAACACTGGAAAAAGAT TCCATTTGCCCTTGAGAAACGTTTTGAAGGAGAAAATTCCGATTGTTTTT TTTTCAAACCTTCATAATCAACTTTCGGCTTTGTAAATCCATTCTCTGAT AATTTCTTTGTTTCATTTTGAAGAATGTTTGCGATTGGTTGTTTTCGAGA ATTGTCATCAAAGAGCTCTTTGTAGATGTCAATGGATCTGTTGAAAAATG GCGTATCCATTCAGGTCTCCACCGATATGTAAGTTTCCTTTCAAAGAAAG AATTTTCAACGTTCAGGGAAAAGTCCCTGATCTTACCTATTTTCATCAAA ATGTGAGTCTTTTTTCAGTTTTGCACTTTTTTTGCACTTTTTTGAAAAAT ATTCAGAATTTTAAGCGAATTTCATGCCTCTTGGTTATAACTTATCCTTA TAATTTCAAAACATAACTGAAAAAAAATTATATTTCAAGTTAAATCAATC ACAAGTGCCTTGCTCTTGTAATCGATAAACATTTTTACCTTATTTTTGTA ATTTCCAGGCTGTAATATTCGGTATGCTTTGCGGATACATATATGTCAAT CTGAAGAGATTAGACCTGATCAAAGATACTGATAATGATGGCAATATATT ACCGTCAACTAAGTATACTATTGCAACCATGGTTGTGGCACTGTGCGCCC TCCTGGTGAGTTTGTGCAGCCTTTTTCTCTGAACGTTTCTAACAAGAAGG AAATCAACTCGTCATCTCTTGATTTTCAGTACATTCGAAAACTGAAAAGT TAAATTTCTATTAAGAGCCATTTCAATGTTGAAGGGAAAAATGAGAACAA CATTTGTAACTTTTTAAGTAAAAGCTTTTCGGTGTATAACCATCACCAGT GCTATTAGATAGTAGCTTTTGTTGTTTTCATTTCTTACCTTTTTCGAAAA ATGCTTTTTGCCTTTCAAAGTACAAATGACTGGTTCCTGTTACGTTTTGA GCTTCATTGTCAGATCCCTCGTAAAACTTTGTGAAGGCCCTCACTGGGAA GAATTAGTACTAGTACACACTTTTTGAATTCTTTGAAAATAAATCTATGT CTTTCAACTTTTAGGGTTATGAGATACAAGCTTTTACATGTCATTCAAAA AGCCTTTGTGATCACACTCACTCCATAGCATCTTGTGTGCCGGTAGGTTA TTGTTCTTTAGTAAGGTGAAATCTATATTGTTTGACCTTGTTCGCTTTTT CTGCTTATTTCTACTAATACTTTGTTTCAGTATTAAGGTCCTTTTAGAAC TGTTGACCTAGGGGTTCTAAAATTCATTTCTCTGAGTTTTTCAGTATCAA ATTTAGTCTCCATGGATAACGTGTTAATTTGACAATGAAAAATGAACTGT TGGCAAAATGCAGCATCAATTTTTTTTCATCAATATTCTATTCGAATCTT TTAGATTTTGGCATTTGTGTTGCTTAGAAATTTACCAGGTTTTCTGAGGA CAAGATACAGTTTACTTTTCGCCTGGATTGGTGACATGTCACTCGAAGTA AGTGAAACACTTTCGTCTTTAGAATAAGTTTTATATCTGCCCCTTTATCC GTGATGTAGTGTTACTTACTTGGTAGAGGGTAACATAATGAATGAGCGAA ATGATATTAAGTATTGGACGAGGAACAACTTTCTTTCAACCTATGATACG ACAGATCTGCCAAATGAACTGCCCATGTGTATACTTAATCATTACAATAT ACAAGGGAGGATTCTTGAAAGTGGTATCGGTGTTTAGTTTTCTTTTCACC TGCAAAGGCGAAGATGTTTTATCTTGAAAACCTTTTTTTTAGAATTTTTT CTTTTCAACTGTAGTTTAACTTTGAAATCTTAATCATTCGATATTCACAT TTCTACAATAACATTTCTTCCCTGCTCACGAGATTTTTTCTGATAAATGT GTTATTATTTTTCTTAGCTTTTCATTGGTCAGTACCATATTTGGTTGAGC AATGATGGATTCGGTGTTCACGTTCTCATCCCTGGTTTTCCCACACTCAA CGCCATCGTTACCACGTTCACATTCGTGTGTACGATACACGAAGTCAAAC AACTCTGCTCAACACTTGCTGACTTGTTGGTCACAAAGGATGTCCGGATC ATGCTGAGAAGGCTTATCATTTTCATCATTTTAATGTTTATTGTTTGGTG GCATAAAACACATGAAAAGAAACCCGTATTTTACGTTTGATGATTTGGTT GGTTGGTTCGTTTCAATCTTATTCTCTGGCTTAGACGTGGGCAGAAAGTT GACAGTCTTTAATTAAAAAAGATTGAAAGAAAGATTGAATTGACGACAAA AGAGGGCAATGCATTGACTTTAGACAGCCAACTTTCTCTCCACTTTAATT CAAGAGGTAAGGTGAAAAGTGGCCTGTCTAATAAACAGAGTTAACACTAC TATGATTAGTTTGGGCTCGAGTCTATCAATCATGCTTAAATTTGTGAAGT CATTGTATTGACGTGACAATACCTTACTGTAATTATCGATTACGTTTTTT AGTTTTTGAGAAGTTTGACTGAAGTTCTTCACAACCGGGATATATCCCAA CTTATCTTTCCCGAAAATGTGAAAATTTGACCCTTGTAGATTCAAACCTA GTCCCCTTCAGAATGATTGATAAAAATATTTTGAAAATACTCGTGGATTT TATGGTCCTTGACTTGGAAATGTTACTCAACTAAAACCGATACCTAGTTT TGAAAGATTCGCATTTTAACTACGGGTAGTAAGGGCAAAGCTTCGTTGGG GAAAAGTCCCGACGTGCCTCTGATGTAGATTGTTCAGATATTGTCAATTT CTTTTGAGGAAAAGTCCCTAGATAAAATTAAGTCTTATCCTGTTCATGGC AGTGCATGGCGAAAAAGTGTGAAGCAAGGAACTACCATTTAATGACTAAA AAAACTCTGTAAAATAGCTATCCCTCGTCACATCATGAAGTCAAATTCCT TTTATTTTTTAAAAACCACTTTTCGTCCGTTTTCAACTTAGAATAGACAA AAATGTCAACCCTATATTCATTCATTCTGAGAGCCATGTACTGTTATGTT TTATGTTTGAATTGGCAAATCATTTTATTATTCAAAATGCAGAATTTTAT TCACATGTAAATACAAAGATGCAATTGTGTATTGCGTACGTAACAATTAA ATTACTTTTTAATTTTCATTGTTAATGAACTATAGTTATTTTGTGTTTTT TTTTTTGTAGATTTTTAAATGAAATAGACGATTTAATTTTTGTGTTAAAT TTAAATTTACCTCGATTAGAATTTCTATTGATTTAACTCCGCGAATTTAA GGCATAAAAGGCATAAAAGCTTGTTTTCGGAAAGTACTTAACAGTTAAAC TGTTCATCACGAAATCATATTCCGACTTGTGCCGACCAATTGCGATTCTA TTCAGCGCGCAATCAACGCAAAGAAAAG

Coding sequence (CDS) from alignment at scaffold_282:316488..323215-

>TCONS_00056780 ID=TCONS_00056780|Name=TCONS_00056780|organism=Clytia hemisphaerica|type=CDS|length=6762bp|location=Sequence derived from alignment at scaffold_282:316488..323215- (Clytia hemisphaerica)
CTTTTCATTGGTCAGTACCATATTTGGTTGAGCAATGATGGATTCGGTGT
TCACGTTCTCATCCCTGGTTTTCCCACACTCAACGCCATCGTTACCACGT
TCACATTCGTGTGTACGATACACGAAGTCAAACAACTCTGCTCAACACTT
GCTGACTTGTTGGTCACAAAGGATGTCCGGATCATGCTGAGAAGGCTTAT
CATTTTCATCATTTTAATGTTTATTGTTTGGTGGCATAAAACACATGAAA
AGAAACCCGTATTTTACGTTTGAATTTTGGCATTTGTGTTGCTTAGAAAT
TTACCAGGTTTTCTGAGGACAAGATACAGTTTACTTTTCGCCTGGATTGG
TGACATGTCACTCGAAGGTTATGAGATACAAGCTTTTACATGTCATTCAA
AAAGCCTTTGTGATCACACTCACTCCATAGCATCTTGTGTGCCGGCTGTA
ATATTCGGTATGCTTTGCGGATACATATATGTCAATCTGAAGAGATTAGA
CCTGATCAAAGATACTGATAATGATGGCAATATATTACCGTCAACTAAGT
ATACTATTGCAACCATGGTTGTGGCACTGTGCGCCCTCCTGAATGTTTGC
GATTGGTTGTTTTCGAGAATTGTCATCAAAGAGCTCTTTGTAGATGTCAA
TGGATCTGTTGAAAAATGGCGTATCCATTCAGGTCTCCACCGATATAGAA
TCCAAAGCGGTTGTTTTTGATGGCCGGAAAATTGGTCATTCTCTTTGTAT
TTGTTTTTGTTGTTTGGGCACACGAGACTCTAAAATTTGATGTCATTCTT
TTTTTTCAGATTTTGGCGCATTTGAACGTATTTTGTGTGTTATTATGTTT
GGCGATGGGGCATTCTTATCAATATTATTTTCTGACGCCACTCGTCACTT
TTTGGTTCTTTGTGGTCTACGTCACCATGGCATTGTTTCCAAGGGTTACC
AGCAATATCGTCGAAGCTTTTCATTGGTCAGTACCATATTTGGTTGAGCA
ATGATGGATTCGGTGTTCACGTTCTCATCCCTGGTTTTCCCACACTCAAC
GCCATCGTTACCACGTTCACATTCGTGTGTACGATACACGAAGTCAAACA
ACTCTGCTCAACACTTGCTGACTTGTTGGTCACAAAGGATGTCCGGATCA
TGCTGAGAAGGCTTATCATTTTCATCATTTTAATGTTTATTGTTTGGTGG
CATAAAACACATGAAAAGAAACCCGTATTTTACGTTTGAATTTTGGCATT
TGTGTTGCTTAGAAATTTACCAGGTTTTCTGAGGACAAGATACAGTTTAC
TTTTCGCCTGGATTGGTGACATGTCACTCGAAGGTTATGAGATACAAGCT
TTTACATGTCATTCAAAAAGCCTTTGTGATCACACTCACTCCATAGCATC
TTGTGTGCCGGCTGTAATATTCGGTATGCTTTGCGGATACATATATGTCA
ATCTGAAGAGATTAGACCTGATCAAAGATACTGATAATGATGGCAATATA
TTACCGTCAACTAAGTATACTATTGCAACCATGGTTGTGGCACTGTGCGC
CCTCCTGAATGTTTGCGATTGGTTGTTTTCGAGAATTGTCATCAAAGAGC
TCTTTGTAGATGTCAATGGATCTGTTGAAAAATGGCGTATCCATTCAGGT
CTCCACCGATATAGAATCCAAAGCGGTTGTTTTTGATGGCCGGAAAATTG
GTCATTCTCTTTGTATTTGTTTTTGTTGTTTGGGCACACGAGACTCTAAA
ATTTGATGTCATTCTTTTTTTTCAGATTTTGGCGCATTTGAACGTATTTT
GTGTGTTATTATGTTTGGCGATGGGGCATTCTTATCAATATTATTTTCTG
ACGCCACTCGTCACTTTTTGGTTCTTTGTGGTCTACGTCACCATGGCATT
GTTTCCAAGGGTTACCAGCAATATCGTCGAAGCTTTTCATTGGTCAGTAC
CATATTTGGTTGAGCAATGATGGATTCGGTGTTCACGTTCTCATCCCTGG
TTTTCCCACACTCAACGCCATCGTTACCACGTTCACATTCGTGTGTACGA
TACACGAAGTCAAACAACTCTGCTCAACACTTGCTGACTTGTTGGTCACA
AAGGATGTCCGGATCATGCTGAGAAGGCTTATCATTTTCATCATTTTAAT
GTTTATTGTTTGGTGGCATAAAACACATGAAAAGAAACCCGTATTTTACG
TTTGAATTTTGGCATTTGTGTTGCTTAGAAATTTACCAGGTTTTCTGAGG
ACAAGATACAGTTTACTTTTCGCCTGGATTGGTGACATGTCACTCGAAGG
TTATGAGATACAAGCTTTTACATGTCATTCAAAAAGCCTTTGTGATCACA
CTCACTCCATAGCATCTTGTGTGCCGGCTGTAATATTCGGTATGCTTTGC
GGATACATATATGTCAATCTGAAGAGATTAGACCTGATCAAAGATACTGA
TAATGATGGCAATATATTACCGTCAACTAAGTATACTATTGCAACCATGG
TTGTGGCACTGTGCGCCCTCCTGAATGTTTGCGATTGGTTGTTTTCGAGA
ATTGTCATCAAAGAGCTCTTTGTAGATGTCAATGGATCTGTTGAAAAATG
GCGTATCCATTCAGGTCTCCACCGATATAGAATCCAAAGCGGTTGTTTTT
GATGGCCGGAAAATTGGTCATTCTCTTTGTATTTGTTTTTGTTGTTTGGG
CACACGAGACTCTAAAATTTGATGTCATTCTTTTTTTTCAGATTTTGGCG
CATTTGAACGTATTTTGTGTGTTATTATGTTTGGCGATGGGGCATTCTTA
TCAATATTATTTTCTGACGCCACTCGTCACTTTTTGGTTCTTTGTGGTCT
ACGTCACCATGGCATTGTTTCCAAGGGTTACCAGCAATATCGTCGAAGCT
TTTCATTGGTCAGTACCATATTTGGTTGAGCAATGATGGATTCGGTGTTC
ACGTTCTCATCCCTGGTTTTCCCACACTCAACGCCATCGTTACCACGTTC
ACATTCGTGTGTACGATACACGAAGTCAAACAACTCTGCTCAACACTTGC
TGACTTGTTGGTCACAAAGGATGTCCGGATCATGCTGAGAAGGCTTATCA
TTTTCATCATTTTAATGTTTATTGTTTGGTGGCATAAAACACATGAAAAG
AAACCCGTATTTTACGTTTGAATTTTGGCATTTGTGTTGCTTAGAAATTT
ACCAGGTTTTCTGAGGACAAGATACAGTTTACTTTTCGCCTGGATTGGTG
ACATGTCACTCGAAGGTTATGAGATACAAGCTTTTACATGTCATTCAAAA
AGCCTTTGTGATCACACTCACTCCATAGCATCTTGTGTGCCGGCTGTAAT
ATTCGGTATGCTTTGCGGATACATATATGTCAATCTGAAGAGATTAGACC
TGATCAAAGATACTGATAATGATGGCAATATATTACCGTCAACTAAGTAT
ACTATTGCAACCATGGTTGTGGCACTGTGCGCCCTCCTGAATGTTTGCGA
TTGGTTGTTTTCGAGAATTGTCATCAAAGAGCTCTTTGTAGATGTCAATG
GATCTGTTGAAAAATGGCGTATCCATTCAGGTCTCCACCGATATAGAATC
CAAAGCGGTTGTTTTTGATGGCCGGAAAATTGGTCATTCTCTTTGTATTT
GTTTTTGTTGTTTGGGCACACGAGACTCTAAAATTTGATGTCATTCTTTT
TTTTCAGATTTTGGCGCATTTGAACGTATTTTGTGTGTTATTATGTTTGG
CGATGGGGCATTCTTATCAATATTATTTTCTGACGCCACTCGTCACTTTT
TGGTTCTTTGTGGTCTACGTCACCATGGCATTGTTTCCAAGGGTTACCAG
CAATATCGTCGAAGCTTTTCATTGGTCAGTACCATATTTGGTTGAGCAAT
GATGGATTCGGTGTTCACGTTCTCATCCCTGGTTTTCCCACACTCAACGC
CATCGTTACCACGTTCACATTCGTGTGTACGATACACGAAGTCAAACAAC
TCTGCTCAACACTTGCTGACTTGTTGGTCACAAAGGATGTCCGGATCATG
CTGAGAAGGCTTATCATTTTCATCATTTTAATGTTTATTGTTTGGTGGCA
TAAAACACATGAAAAGAAACCCGTATTTTACGTTTGAATTTTGGCATTTG
TGTTGCTTAGAAATTTACCAGGTTTTCTGAGGACAAGATACAGTTTACTT
TTCGCCTGGATTGGTGACATGTCACTCGAAGGTTATGAGATACAAGCTTT
TACATGTCATTCAAAAAGCCTTTGTGATCACACTCACTCCATAGCATCTT
GTGTGCCGGCTGTAATATTCGGTATGCTTTGCGGATACATATATGTCAAT
CTGAAGAGATTAGACCTGATCAAAGATACTGATAATGATGGCAATATATT
ACCGTCAACTAAGTATACTATTGCAACCATGGTTGTGGCACTGTGCGCCC
TCCTGAATGTTTGCGATTGGTTGTTTTCGAGAATTGTCATCAAAGAGCTC
TTTGTAGATGTCAATGGATCTGTTGAAAAATGGCGTATCCATTCAGGTCT
CCACCGATATAGAATCCAAAGCGGTTGTTTTTGATGGCCGGAAAATTGGT
CATTCTCTTTGTATTTGTTTTTGTTGTTTGGGCACACGAGACTCTAAAAT
TTGATGTCATTCTTTTTTTTCAGATTTTGGCGCATTTGAACGTATTTTGT
GTGTTATTATGTTTGGCGATGGGGCATTCTTATCAATATTATTTTCTGAC
GCCACTCGTCACTTTTTGGTTCTTTGTGGTCTACGTCACCATGGCATTGT
TTCCAAGGGTTACCAGCAATATCGTCGAAGCTTTTCATTGGTCAGTACCA
TATTTGGTTGAGCAATGATGGATTCGGTGTTCACGTTCTCATCCCTGGTT
TTCCCACACTCAACGCCATCGTTACCACGTTCACATTCGTGTGTACGATA
CACGAAGTCAAACAACTCTGCTCAACACTTGCTGACTTGTTGGTCACAAA
GGATGTCCGGATCATGCTGAGAAGGCTTATCATTTTCATCATTTTAATGT
TTATTGTTTGGTGGCATAAAACACATGAAAAGAAACCCGTATTTTACGTT
TGAATTTTGGCATTTGTGTTGCTTAGAAATTTACCAGGTTTTCTGAGGAC
AAGATACAGTTTACTTTTCGCCTGGATTGGTGACATGTCACTCGAAGGTT
ATGAGATACAAGCTTTTACATGTCATTCAAAAAGCCTTTGTGATCACACT
CACTCCATAGCATCTTGTGTGCCGGCTGTAATATTCGGTATGCTTTGCGG
ATACATATATGTCAATCTGAAGAGATTAGACCTGATCAAAGATACTGATA
ATGATGGCAATATATTACCGTCAACTAAGTATACTATTGCAACCATGGTT
GTGGCACTGTGCGCCCTCCTGAATGTTTGCGATTGGTTGTTTTCGAGAAT
TGTCATCAAAGAGCTCTTTGTAGATGTCAATGGATCTGTTGAAAAATGGC
GTATCCATTCAGGTCTCCACCGATATAGAATCCAAAGCGGTTGTTTTTGA
TGGCCGGAAAATTGGTCATTCTCTTTGTATTTGTTTTTGTTGTTTGGGCA
CACGAGACTCTAAAATTTGATGTCATTCTTTTTTTTCAGATTTTGGCGCA
TTTGAACGTATTTTGTGTGTTATTATGTTTGGCGATGGGGCATTCTTATC
AATATTATTTTCTGACGCCACTCGTCACTTTTTGGTTCTTTGTGGTCTAC
GTCACCATGGCATTGTTTCCAAGGGTTACCAGCAATATCGTCGAAGCTTT
TCATTGGTCAGTACCATATTTGGTTGAGCAATGATGGATTCGGTGTTCAC
GTTCTCATCCCTGGTTTTCCCACACTCAACGCCATCGTTACCACGTTCAC
ATTCGTGTGTACGATACACGAAGTCAAACAACTCTGCTCAACACTTGCTG
ACTTGTTGGTCACAAAGGATGTCCGGATCATGCTGAGAAGGCTTATCATT
TTCATCATTTTAATGTTTATTGTTTGGTGGCATAAAACACATGAAAAGAA
ACCCGTATTTTACGTTTGAATTTTGGCATTTGTGTTGCTTAGAAATTTAC
CAGGTTTTCTGAGGACAAGATACAGTTTACTTTTCGCCTGGATTGGTGAC
ATGTCACTCGAAGGTTATGAGATACAAGCTTTTACATGTCATTCAAAAAG
CCTTTGTGATCACACTCACTCCATAGCATCTTGTGTGCCGGCTGTAATAT
TCGGTATGCTTTGCGGATACATATATGTCAATCTGAAGAGATTAGACCTG
ATCAAAGATACTGATAATGATGGCAATATATTACCGTCAACTAAGTATAC
TATTGCAACCATGGTTGTGGCACTGTGCGCCCTCCTGAATGTTTGCGATT
GGTTGTTTTCGAGAATTGTCATCAAAGAGCTCTTTGTAGATGTCAATGGA
TCTGTTGAAAAATGGCGTATCCATTCAGGTCTCCACCGATATAGAATCCA
AAGCGGTTGTTTTTGATGGCCGGAAAATTGGTCATTCTCTTTGTATTTGT
TTTTGTTGTTTGGGCACACGAGACTCTAAAATTTGATGTCATTCTTTTTT
TTCAGATTTTGGCGCATTTGAACGTATTTTGTGTGTTATTATGTTTGGCG
ATGGGGCATTCTTATCAATATTATTTTCTGACGCCACTCGTCACTTTTTG
GTTCTTTGTGGTCTACGTCACCATGGCATTGTTTCCAAGGGTTACCAGCA
ATATCGTCGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035763XLOC_035763Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056780-proteinTCONS_00056780-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056780-exon-scaffold_282-1575043694:323025..323215TCONS_00056780-exon-scaffold_282-1575043694:323025..323215Clytia hemisphaericaexon
TCONS_00056780-exon-scaffold_282-1575043694:320576..320655TCONS_00056780-exon-scaffold_282-1575043694:320576..320655Clytia hemisphaericaexon
TCONS_00056780-exon-scaffold_282-1575043694:319688..319792TCONS_00056780-exon-scaffold_282-1575043694:319688..319792Clytia hemisphaericaexon
TCONS_00056780-exon-scaffold_282-1575043694:319261..319407TCONS_00056780-exon-scaffold_282-1575043694:319261..319407Clytia hemisphaericaexon
TCONS_00056780-exon-scaffold_282-1575043694:318774..318851TCONS_00056780-exon-scaffold_282-1575043694:318774..318851Clytia hemisphaericaexon
TCONS_00056780-exon-scaffold_282-1575043694:318419..318511TCONS_00056780-exon-scaffold_282-1575043694:318419..318511Clytia hemisphaericaexon
TCONS_00056780-exon-scaffold_282-1575043694:316488..317998TCONS_00056780-exon-scaffold_282-1575043694:316488..317998Clytia hemisphaericaexon
TCONS_00056780-exon-scaffold_282-1510915933:323025..323215TCONS_00056780-exon-scaffold_282-1510915933:323025..323215Clytia hemisphaericaexon
TCONS_00056780-exon-scaffold_282-1510915933:320576..320655TCONS_00056780-exon-scaffold_282-1510915933:320576..320655Clytia hemisphaericaexon
TCONS_00056780-exon-scaffold_282-1510915933:319688..319792TCONS_00056780-exon-scaffold_282-1510915933:319688..319792Clytia hemisphaericaexon
TCONS_00056780-exon-scaffold_282-1510915933:319261..319407TCONS_00056780-exon-scaffold_282-1510915933:319261..319407Clytia hemisphaericaexon
TCONS_00056780-exon-scaffold_282-1510915933:318774..318851TCONS_00056780-exon-scaffold_282-1510915933:318774..318851Clytia hemisphaericaexon
TCONS_00056780-exon-scaffold_282-1510915933:318419..318511TCONS_00056780-exon-scaffold_282-1510915933:318419..318511Clytia hemisphaericaexon
TCONS_00056780-exon-scaffold_282-1510915933:316488..317998TCONS_00056780-exon-scaffold_282-1510915933:316488..317998Clytia hemisphaericaexon
TCONS_00056780-exon-scaffold_282-1491911889:323025..323215TCONS_00056780-exon-scaffold_282-1491911889:323025..323215Clytia hemisphaericaexon
TCONS_00056780-exon-scaffold_282-1491911889:320576..320655TCONS_00056780-exon-scaffold_282-1491911889:320576..320655Clytia hemisphaericaexon
TCONS_00056780-exon-scaffold_282-1491911889:319688..319792TCONS_00056780-exon-scaffold_282-1491911889:319688..319792Clytia hemisphaericaexon
TCONS_00056780-exon-scaffold_282-1491911889:319261..319407TCONS_00056780-exon-scaffold_282-1491911889:319261..319407Clytia hemisphaericaexon
TCONS_00056780-exon-scaffold_282-1491911889:318774..318851TCONS_00056780-exon-scaffold_282-1491911889:318774..318851Clytia hemisphaericaexon
TCONS_00056780-exon-scaffold_282-1491911889:318419..318511TCONS_00056780-exon-scaffold_282-1491911889:318419..318511Clytia hemisphaericaexon
TCONS_00056780-exon-scaffold_282-1491911889:316488..317998TCONS_00056780-exon-scaffold_282-1491911889:316488..317998Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_282supercontigscaffold_282:316488..323215 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

min expression (2.7565 tpm) - - (23.3674 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.59894 5.29952 2.81752 2.7565 20.8777 15.073 20.5666 21.1797 14.8134 15.6957 17.5036 13.8027 13.1334 14.2529 11.4048 13.7123 11.1816 11.3924 10.8266 12.7726 10.3793 9.22902 8.25382 9.44938 23.1484 23.3674 8.45717 6.81481 9.68656 7.29628
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR012419Cas1_AcylTrans_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056780 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
ZOOM
x 1
POSITION
0
2004006008001000120014001600180020002200Expect = 3.34e-53 / Id = 40.14SequenceCASD1
Match NameE-valueIdentityDescription
CASD13.340e-5340.14N-acetylneuraminate 9-O-acetyltransferase OS=Homo ... [more]
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