TCONS_00056788 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056788
Unique NameTCONS_00056788
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length321

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056788 ID=TCONS_00056788|Name=TCONS_00056788|organism=Clytia hemisphaerica|type=transcript|length=321bp
aaaaagaacaagTTATAAAACGAAAATACGTACTGAAAACACTTTCCATT
CACACACCTCACAGACAACATCAAACTAGTAACTGAATCTCAACATGCct
tcaaaacatttaaaacgtAGAAGTTCGCTAACAGAACAATCAAAATACCC
GAGAGACAAGGAACTGGCTAGAGCACGATACAATAGTAACAAAGACAATA
AACAGAACAACCAATACAATAATAAACGATTAACGATATAACTCAACACC
CAAAGGACTAGCACTCACATAAACAGCtaattatttacatttttaaagCA
ATTACTAAAAGATAAACTAGG
Run BLAST on NCBI

transcript from alignment at scaffold_282:40319..40639

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056788 ID=TCONS_00056788|Name=TCONS_00056788|organism=Clytia hemisphaerica|type=transcript|length=321bp|location=Sequence derived from alignment at scaffold_282:40319..40639 (Clytia hemisphaerica)
CCTAGTTTATCTTTTAGTAATTGctttaaaaatgtaaataattaGCTGTT
TATGTGAGTGCTAGTCCTTTGGGTGTTGAGTTATATCGTTAATCGTTTAT
TATTGTATTGGTTGTTCTGTTTATTGTCTTTGTTACTATTGTATCGTGCT
CTAGCCAGTTCCTTGTCTCTCGGGTATTTTGATTGTTCTGTTAGCGAACT
TCTacgttttaaatgttttgaagGCATGTTGAGATTCAGTTACTAGTTTG
ATGTTGTCTGTGAGGTGTGTGAATGGAAAGTGTTTTCAGTACGTATTTTC
GTTTTATAActtgttcttttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035768XLOC_035768Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056788-exon-scaffold_282-1491911889:40319..40639TCONS_00056788-exon-scaffold_282-1491911889:40319..40639Clytia hemisphaericaexon
TCONS_00056788-exon-scaffold_282-1510915933:40319..40639TCONS_00056788-exon-scaffold_282-1510915933:40319..40639Clytia hemisphaericaexon
TCONS_00056788-exon-scaffold_282-1575043694:40319..40639TCONS_00056788-exon-scaffold_282-1575043694:40319..40639Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_282supercontigscaffold_282:40319..40639 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.44308	0.92659	2.15172	4.47532	0	0.610192	0	0	0	0	0	0.421883	0.421297	0.120004	0	0	0	0.083753	0	0	1.08528	1.34433	0.363158	0.990491	0	0	0	0	1.40619	0.358171
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056788 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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