TCONS_00056791 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056791
Unique NameTCONS_00056791
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length368

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056791 ID=TCONS_00056791|Name=TCONS_00056791|organism=Clytia hemisphaerica|type=transcript|length=368bp
taacaaaagaacagtaaagctaagtttgttaaaaatcaatGAAACCAGCA
CAAATGGGATAGGCCAAATCAGCAGTTTTTATTGGAATCATAAAGGCAAA
GGTCAAACAATTGCATTGTGAccgttttgttatttttttggcaATGACTT
CTTTAAGAAGAGATGCTTTATTCTATCGACCTCTTTGTCAAGAATATATG
TCAACCTGAAATATCgaacaatagtttttctatcgacttcttttatttgt
cgagaatgtaaatgaatctgctcaagcagacaaggtttatatttttgccg
TGTACGAAATATCGGACAATAGTTTTTCTATCGACTTCTTTGTCGAGAGT
GTAAATAATCAATCTGCN
Run BLAST on NCBI

transcript from alignment at scaffold_282:151307..151674

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056791 ID=TCONS_00056791|Name=TCONS_00056791|organism=Clytia hemisphaerica|type=transcript|length=368bp|location=Sequence derived from alignment at scaffold_282:151307..151674 (Clytia hemisphaerica)
NGCAGATTGATTATTTACACTCTCGACAAAGAAGTCGATAGAAAAACTAT
TGTCCGATATTTCGTACAcggcaaaaatataaaccttgtctgcttgagca
gattcatttacattctcgacaaataaaagaagtcgatagaaaaactattg
ttcGATATTTCAGGTTGACATATATTCTTGACAAAGAGGTCGATAGAATA
AAGCATCTCTTCTTAAAGAAGTCATtgccaaaaaaataacaaaacggTCA
CAATGCAATTGTTTGACCTTTGCCTTTATGATTCCAATAAAAACTGCTGA
TTTGGCCTATCCCATTTGTGCTGGTTTCattgatttttaacaaacttagc
tttactgttcttttgtta
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035771XLOC_035771Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056791-exon-scaffold_282-1491911889:151307..151674TCONS_00056791-exon-scaffold_282-1491911889:151307..151674Clytia hemisphaericaexon
TCONS_00056791-exon-scaffold_282-1510915933:151307..151674TCONS_00056791-exon-scaffold_282-1510915933:151307..151674Clytia hemisphaericaexon
TCONS_00056791-exon-scaffold_282-1575043694:151307..151674TCONS_00056791-exon-scaffold_282-1575043694:151307..151674Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_282supercontigscaffold_282:151307..151674 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.35679	2.13186	2.43461	2.3739	46.79	29.0326	25.7867	31.9673	8.62959	9.71493	11.6465	10.2101	8.79283	9.79052	7.6662	3.88894	5.07451	4.4466	6.36274	8.56831	32.7297	25.1994	7.58982	10.8186	3.62971	8.54257	35.9357	38.3392	29.8035	32.7821
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056791 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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