TCONS_00056799 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056799
Unique NameTCONS_00056799
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length258

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056799 ID=TCONS_00056799|Name=TCONS_00056799|organism=Clytia hemisphaerica|type=transcript|length=258bp
ACGGCAGTAAACACACGATTTCACCATCATATTCTGTACATCAAACTGTA
CATCATCAAACCGTACTCAAAATTTGTTCCCGNACACGATTTCACCATCA
TATTCTGTACATCAAACTGTACATCAAACCGTACTCAAAATTTGTTCCCA
ATTGCTGAATTTTTCAGGTAAGAATAAATTCATttctacccagctggcac
acaacgttgtttcaacgttcatgtaacgttatatggacgttgtgaacatt
agatggac
Run BLAST on NCBI

transcript from alignment at scaffold_282:293551..293808

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056799 ID=TCONS_00056799|Name=TCONS_00056799|organism=Clytia hemisphaerica|type=transcript|length=258bp|location=Sequence derived from alignment at scaffold_282:293551..293808 (Clytia hemisphaerica)
gtccatctaatgttcacaacgtccatataacgttacatgaacgttgaaac
aacgttgtgtgccagctgggtagaaATGAATTTATTCTTACCTGAAAAAT
TCAGCAATTGGGAACAAATTTTGAGTACGGTTTGATGTACAGTTTGATGT
ACAGAATATGATGGTGAAATCGTGTNCGGGAACAAATTTTGAGTACGGTT
TGATGATGTACAGTTTGATGTACAGAATATGATGGTGAAATCGTGTGTTT
ACTGCCGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035779XLOC_035779Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056799-exon-scaffold_282-1491911889:293551..293808TCONS_00056799-exon-scaffold_282-1491911889:293551..293808Clytia hemisphaericaexon
TCONS_00056799-exon-scaffold_282-1510915933:293551..293808TCONS_00056799-exon-scaffold_282-1510915933:293551..293808Clytia hemisphaericaexon
TCONS_00056799-exon-scaffold_282-1575043694:293551..293808TCONS_00056799-exon-scaffold_282-1575043694:293551..293808Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_282supercontigscaffold_282:293551..293808 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.30576	2.63639	0	1.4994	7.30152	12.2607	41.3576	42.3295	5.63118	10.8219	10.8336	1.35222	1.38044	1.7915	4.55138	3.50438	5.56949	3.51862	2.15833	4.71223	1.53162	3.83009	2.89021	4.74585	4.42417	7.1336	0.930542	0	3.2515	1.53068
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056799 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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