TCONS_00056810 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056810
Unique NameTCONS_00056810
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length809

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056810 ID=TCONS_00056810|Name=TCONS_00056810|organism=Clytia hemisphaerica|type=transcript|length=809bp
gattctaatatctacacatatggtagatttacggatgtttacatatctac
acatatggtagaaataagtgtGAGAATGTGTTGGGATTAAACCCTCTTAT
TATGGAAAGCATGAATTTTCTCTTATTGGAGTTAGTCTAGACTATGTAAT
TTTTGCGAAGGTAGCTTCTACGACAGAAAGCTTtcacacacccctgtctc
attcgATTGTCCAGTTAGGAGAAGTCCCCGGAGGAGTTCCATCTGGTCTG
TGATAAGTTTACGTTTCCAACATTGTTCCAATTTTTCTTCTCTGTTTTAC
ATAAATGTATTTTAAGAACTCATTTGTTAAGCTTGGTATATTTTGGGAAT
TCATCTAAATTTTGACTACTCGACTCTTTTGGAGATTGATTTGATGGTAG
acttaaaagtttgttttggtGATATTAGTACTAACTTTCTGATTCGCTTC
GagaaattttataagaaaataaataaacattgGACTCCTTAAAGAGTGTT
GTGAGGATTTTTATTCTTTGATGTTATTTAGGATCATAACCTCTAATGAA
AAGATTAACAATAGCTTCAACAAATATTGACCGTCAAAACGGAACGCTTT
TTAGcggttttcaaaactttgtgtAAGACTGACAGAAAGTGTCAAATTAG
AAAACGTGTACTTGTCTCAGAGAATGGACGCTCcactttttgtcaaaaaa
acggACGAATGACTTCTTTTGAACAAGACAATGTGTGCAGCAATAACAAG
TCTTTTTTTCATCACCacaatttttttagtttgaagATTTAATTCGAAGA
TAAGGGAAT
Run BLAST on NCBI

transcript from alignment at scaffold_282:418127..418935

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056810 ID=TCONS_00056810|Name=TCONS_00056810|organism=Clytia hemisphaerica|type=transcript|length=809bp|location=Sequence derived from alignment at scaffold_282:418127..418935 (Clytia hemisphaerica)
ATTCCCTTATCTTCGAATTAAATcttcaaactaaaaaaattgtGGTGATG
AAAAAAAGACTTGTTATTGCTGCACACATTGTCTTGTTCAAAAGAAGTCA
TTCGTccgtttttttgacaaaaagtgGAGCGTCCATTCTCTGAGACAAGT
ACACGTTTTCTAATTTGACACTTTCTGTCAGTCTTacacaaagttttgaa
aaccgCTAAAAAGCGTTCCGTTTTGACGGTCAATATTTGTTGAAGCTATT
GTTAATCTTTTCATTAGAGGTTATGATCCTAAATAACATCAAAGAATAAA
AATCCTCACAACACTCTTTAAGGAGTCcaatgtttatttattttcttata
aaatttctCGAAGCGAATCAGAAAGTTAGTACTAATATCaccaaaacaaa
cttttaagtCTACCATCAAATCAATCTCCAAAAGAGTCGAGTAGTCAAAA
TTTAGATGAATTCCCAAAATATACCAAGCTTAACAAATGAGTTCTTAAAA
TACATTTATGTAAAACAGAGAAGAAAAATTGGAACAATGTTGGAAACGTA
AACTTATCACAGACCAGATGGAACTCCTCCGGGGACTTCTCCTAACTGGA
CAATcgaatgagacaggggtgtgtgaAAGCTTTCTGTCGTAGAAGCTACC
TTCGCAAAAATTACATAGTCTAGACTAACTCCAATAAGAGAAAATTCATG
CTTTCCATAATAAGAGGGTTTAATCCCAACACATTCTCacacttatttct
accatatgtgtagatatgtaaacatccgtaaatctaccatatgtgtagat
attagaatc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035789XLOC_035789Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056810-exon-scaffold_282-1491911889:418127..418935TCONS_00056810-exon-scaffold_282-1491911889:418127..418935Clytia hemisphaericaexon
TCONS_00056810-exon-scaffold_282-1510915933:418127..418935TCONS_00056810-exon-scaffold_282-1510915933:418127..418935Clytia hemisphaericaexon
TCONS_00056810-exon-scaffold_282-1575043694:418127..418935TCONS_00056810-exon-scaffold_282-1575043694:418127..418935Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_282supercontigscaffold_282:418127..418935 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.218325	0.212688	0.076474	0.130999	0.239219	0.126022	0.0760204	0.0711694	0.124266	0	0	0.425519	1.4886	2.76176	2.1467	0.382914	0	0.16782	0	0.20566	0.368969	0.699894	0.135594	0.369823	0.190454	0	0.508448	0.181491	0.155212	0.181357
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056810 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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