|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056822 ID=TCONS_00056822|Name=TCONS_00056822|organism=Clytia hemisphaerica|type=transcript|length=1432bp
cggaaacaaaagaaaatcatcCACAAAATGTAAAACGTGGGGACCAACCA
GAAAATATTTACACGATTATCAGTAAacttattttcaagaaaaatcaaaa
aacatatCACACACAAAGAAATTCTTGAGGAACGAAGTCGAAATCAGCTA
AGAAGAAATCAGTTTTGTTGTTAAACATAGACAAGACACGTACAAAATGA
ACACCATAGCTGCAATTGAAGTTGCCGCCGGTTGTCGAAAACTGACCAAA
CATTCAATTGAATCCTTAACCTCTCCTATAGAAAGCGAAAACGGCAGCGA
TGGAGGAAGCACATCTCCTAAAAAGGAGAACAAAGATCGTAATAAGGTGC
ACTCCGACAAGGTGACTTCTTACACTGAGATGATCGCTAGAGCCATCTTA
GCATCACCAAATGTCATGGCAACTCTAGCAGATATCTATAGTCACCTCAT
TTCAAAATATCCTCTTCTGAAAGGCCGAGGTAAATCGTGGAAAAATAGTG
TCAGACACACTTTATCATTGAATGAATGGTTCATCAAAATCCCCAAACTT
GACAACGCAAAATGTTGTTATTGGTCAATCCATCCGTCCTACCTCCAACG
TTTCAGGAAAGGGGATTTTCAAAAACAGCGGAAAGCAGCCATCACTAAAT
TACGGACACATCATCACAATTCCGGACATCATCATAACCGGTATTACGAT
TTAAACTACGACATTAGCCCAACTATGGATTACCATTTTCCTACTCATTT
CAACGAAATGAATAATACTTCTGTTTCACCTCACGCCAACTTTTCATCAT
GGCCAAGTAGATCGCCCTATGAGGAATACCAAACATTCTTTCCACCCTCT
GGTACCGCCCAACAATATCAAAGCCCGTACCAACCAACTCAAATGTACAA
TCAACAAGGAACGCCCCCACCCTATCCAGTCCACCCGGCTACTAATTATC
CACACTCATATTATGGAGCGCCGGaacatgaaaatttttttaattatcga
CCAGCCGAAACGAATAATTACTATAACGCTCCACCATCCCACATGAGATG
TGGCATCAATCGGACAGTTGATCCTTACAGACCCGCAGAGAGAGAAGCTG
CTTCTGTATTGGACGATCAACAGAGTAACCCACATCAACCAATTAACTCC
GAAATGAAAGCTGAATCAACGGGATGTTAACATTTTTCATTATCGTGAAA
CTGTATGTATATTTGAAGTTGTGTAtctatttcaaatctttttttctgac
tGACTGACATgctaaaatattatatttttaggCCTTATTTTAATTCGATA
TTAAATTCATTAAATTCATTATGAATTTAATTTgcttgggacgagatgga
gtttttacaagctcttttatgatttggttggtcgttaaccagtaataaaa
caattttgttacttatttttctaaagaaaaaa Run BLAST on NCBI protein sequence of Forkhead box protein >TCONS_00056822-protein ID=TCONS_00056822-protein|Name=Forkhead box protein|organism=Clytia hemisphaerica|type=polypeptide|length=327bp
MNTIAAIEVAAGCRKLTKHSIESLTSPIESENGSDGGSTSPKKENKDRNK
VHSDKVTSYTEMIARAILASPNVMATLADIYSHLISKYPLLKGRGKSWKN
SVRHTLSLNEWFIKIPKLDNAKCCYWSIHPSYLQRFRKGDFQKQRKAAIT
KLRTHHHNSGHHHNRYYDLNYDISPTMDYHFPTHFNEMNNTSVSPHANFS
SWPSRSPYEEYQTFFPPSGTAQQYQSPYQPTQMYNQQGTPPPYPVHPATN
YPHSYYGAPEHENFFNYRPAETNNYYNAPPSHMRCGINRTVDPYRPAERE
AASVLDDQQSNPHQPINSEMKAESTGC Run BLAST on NCBI transcript from alignment at scaffold_283:71246..74002+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056822 ID=TCONS_00056822|Name=TCONS_00056822|organism=Clytia hemisphaerica|type=transcript|length=2757bp|location=Sequence derived from alignment at scaffold_283:71246..74002+ (Clytia hemisphaerica)
cggaaacaaaagaaaatcatcCACAAAATGTAAAACGTGGGGACCAACCA
GAAAATATTTACACGATTATCAGTAAacttattttcaagaaaaatcaaaa
aacatatCACACACAAAGAAATTCTTGAGGAACGAAGTCGAAATCAGCTA
AGAAGAAATCAGTTTTGTTGTTAAACATGTGAGTGTTTTGTTTGTCAATT
ATTTACAAACTTTctcattcttttcttttttcgttttgttttctatttct
aatgTAATTATTTATTAACAAATCTGATTATTGCTTCGGCAACTCTTCAC
CAAGAGAACAAACGAATTAGAAGATACATTCCATTGAAATTAAAGCTTGC
ACCATCAGACTAGTCTGGAGGCCCGTTTTCCGAATGCTCTTTTCCCataa
ccccccccccaacattttgcaaagtaatttttttttactttaaaaaatct
tatatatactgtttagaggggtgaaatacaaaattttcttcgtcgcccaa
ccatggtgggcgaaagaattcctttttataagatTAACGAGGctcaaatt
cttaaaaaataagacgaaaaataacattttttataaggaaccttaactaa
GCTCCGACCTCCGAGCCTGGGGCTCCTTATTTTTCCAAAGAATTTCAGCC
TAGAAGTTCCTTatggagttctttacctacttAGCTGCTAAGATTGCTAA
GTATGTAGTTCATGAACGTTGTTTAATCAATATTGCGTcatatttttgtt
tcaatttttgtaaatgAATGTAAAAGTTCAAGTTAAACTGTCTGTTCCTT
AACTTGTTTTATTATTCTCAGcttgagcagttccttaacaattccttaat
tttccaacaattttcagcctcaagttccttataaacgtgttccttacaaa
aaaaacgtgTGTAATTTCAGAAGTAGCTACTCAGTAAAAAAAGTAAGATA
GACAGACCTGAATACCTCATTTTTGGTCTTAATATAATATGAGGCTCAAA
GGAACCGAACAAATGAATCTTACAAAAAAGCATGTATGCACACCACGCAT
TCAGACAAATATTCATTTTCGGTACACCCGGTAAAAACGTAGTGGTCCCG
AACCGAGTCTGATTGCTCTTATTAAATACAATCATGGTCtatctattgag
aatttagcttatttcctcgtttttcaaaatttggagttcgggtgagaaag
tcgcttttgggctaattgataaatttattcgagtatttcaatTCAGGATG
GGTTTAGAGACTTCCAGACCATATTGTGAGCCATATTGTACCGTTCTTGA
ACTTTTCGATCCTTAAAACCAAAGCTCCTAAgtttagcgttaaaactcag
ggTTAAAACTGTCCTTCCAACCTAATTAGAGCgtaaatcgtttgtggtta
aaagattttgttggAGTTTccgttttttctcaaatattacgaccatgatt
ttAGTTCTTGCAGAAAAGaagtatatttttttcaatttttttatcttcct
CAGAGACAAGACACGTACAAAATGAACACCATAGCTGCAATTGAAGTTGC
CGCCGGTTGTCGAAAACTGACCAAACATTCAATTGAATCCTTAACCTCTC
CTATAGAAAGCGAAAACGGCAGCGATGGAGGAAGCACATCTCCTAAAAAG
GAGAACAAAGATCGTAATAAGGTGCACTCCGACAAGGTGACTTCTTACAC
TGAGATGATCGCTAGAGCCATCTTAGCATCACCAAATGTCATGGCAACTC
TAGCAGATATCTATAGTCACCTCATTTCAAAATATCCTCTTCTGAAAGGC
CGAGGTAAATCGTGGAAAAATAGTGTCAGACACACTTTATCATTGAATGA
ATGGTTCATCAAAATCCCCAAACTTGACAACGCAAAATGTTGTTATTGGT
CAATCCATCCGTCCTACCTCCAACGTTTCAGGAAAGGGGATTTTCAAAAA
CAGCGGAAAGCAGCCATCACTAAATTACGGACACATCATCACAATTCCGG
ACATCATCATAACCGGTATTACGATTTAAACTACGACATTAGCCCAACTA
TGGATTACCATTTTCCTACTCATTTCAACGAAATGAATAATACTTCTGTT
TCACCTCACGCCAACTTTTCATCATGGCCAAGTAGATCGCCCTATGAGGA
ATACCAAACATTCTTTCCACCCTCTGGTACCGCCCAACAATATCAAAGCC
CGTACCAACCAACTCAAATGTACAATCAACAAGGAACGCCCCCACCCTAT
CCAGTCCACCCGGCTACTAATTATCCACACTCATATTATGGAGCGCCGGa
acatgaaaatttttttaattatcgaCCAGCCGAAACGAATAATTACTATA
ACGCTCCACCATCCCACATGAGATGTGGCATCAATCGGACAGTTGATCCT
TACAGACCCGCAGAGAGAGAAGCTGCTTCTGTATTGGACGATCAACAGAG
TAACCCACATCAACCAATTAACTCCGAAATGAAAGCTGAATCAACGGGAT
GTTAACATTTTTCATTATCGTGAAACTGTATGTATATTTGAAGTTGTGTA
tctatttcaaatctttttttctgactGACTGACATgctaaaatattatat
ttttaggCCTTATTTTAATTCGATATTAAATTCATTAAATTCATTATGAA
TTTAATTTgcttgggacgagatggagtttttacaagctcttttatgattt
ggttggtcgttaaccagtaataaaacaattttgttacttatttttctaaa
gaaaaaa Coding sequence (CDS) from alignment at scaffold_283:71246..74002+ >TCONS_00056822 ID=TCONS_00056822|Name=TCONS_00056822|organism=Clytia hemisphaerica|type=CDS|length=984bp|location=Sequence derived from alignment at scaffold_283:71246..74002+ (Clytia hemisphaerica)
ATGAACACCATAGCTGCAATTGAAGTTGCCGCCGGTTGTCGAAAACTGAC
CAAACATTCAATTGAATCCTTAACCTCTCCTATAGAAAGCGAAAACGGCA
GCGATGGAGGAAGCACATCTCCTAAAAAGGAGAACAAAGATCGTAATAAG
GTGCACTCCGACAAGGTGACTTCTTACACTGAGATGATCGCTAGAGCCAT
CTTAGCATCACCAAATGTCATGGCAACTCTAGCAGATATCTATAGTCACC
TCATTTCAAAATATCCTCTTCTGAAAGGCCGAGGTAAATCGTGGAAAAAT
AGTGTCAGACACACTTTATCATTGAATGAATGGTTCATCAAAATCCCCAA
ACTTGACAACGCAAAATGTTGTTATTGGTCAATCCATCCGTCCTACCTCC
AACGTTTCAGGAAAGGGGATTTTCAAAAACAGCGGAAAGCAGCCATCACT
AAATTACGGACACATCATCACAATTCCGGACATCATCATAACCGGTATTA
CGATTTAAACTACGACATTAGCCCAACTATGGATTACCATTTTCCTACTC
ATTTCAACGAAATGAATAATACTTCTGTTTCACCTCACGCCAACTTTTCA
TCATGGCCAAGTAGATCGCCCTATGAGGAATACCAAACATTCTTTCCACC
CTCTGGTACCGCCCAACAATATCAAAGCCCGTACCAACCAACTCAAATGT
ACAATCAACAAGGAACGCCCCCACCCTATCCAGTCCACCCGGCTACTAAT
TATCCACACTCATATTATGGAGCGCCGGaacatgaaaatttttttaatta
tcgaCCAGCCGAAACGAATAATTACTATAACGCTCCACCATCCCACATGA
GATGTGGCATCAATCGGACAGTTGATCCTTACAGACCCGCAGAGAGAGAA
GCTGCTTCTGTATTGGACGATCAACAGAGTAACCCACATCAACCAATTAA
CTCCGAAATGAAAGCTGAATCAACGGGATGTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056822-exon-scaffold_283-1491911889:71246..71423 | TCONS_00056822-exon-scaffold_283-1491911889:71246..71423 | Clytia hemisphaerica | exon |
| TCONS_00056822-exon-scaffold_283-1510915933:71246..71423 | TCONS_00056822-exon-scaffold_283-1510915933:71246..71423 | Clytia hemisphaerica | exon |
| TCONS_00056822-exon-scaffold_283-1575043694:71246..71423 | TCONS_00056822-exon-scaffold_283-1575043694:71246..71423 | Clytia hemisphaerica | exon |
| TCONS_00056822-exon-scaffold_283-1491911889:72749..74002 | TCONS_00056822-exon-scaffold_283-1491911889:72749..74002 | Clytia hemisphaerica | exon |
| TCONS_00056822-exon-scaffold_283-1510915933:72749..74002 | TCONS_00056822-exon-scaffold_283-1510915933:72749..74002 | Clytia hemisphaerica | exon |
| TCONS_00056822-exon-scaffold_283-1575043694:72749..74002 | TCONS_00056822-exon-scaffold_283-1575043694:72749..74002 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_283 | supercontig | scaffold_283:71246..74002 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003700 | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | sequence-specific DNA binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006355 |
regulation of transcription, DNA-templated |
| molecular_function |
GO:0043565 |
sequence-specific DNA binding |
| molecular_function |
GO:0003700 |
transcription factor activity, sequence-specific DNA binding |
Blast
The following BLAST results are available for this feature:
|
