TCONS_00056842 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056842
Unique NameTCONS_00056842
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length431

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056842 ID=TCONS_00056842|Name=TCONS_00056842|organism=Clytia hemisphaerica|type=transcript|length=431bp
gaacAGAGAGGCTTCGATTACCGTTTTTGAGGGGATCCTATTTTGACACA
GTTGAATGTTTGCTTGTGCCAGAAATACACACCTACTTTATCATGAAGAG
GGAGAACCTTTCATACAGAGACGCAACCCAATATATGTATGGCGAATTTC
AACCAACTGTTTTTCACATCATGCTACTTGAAAATgaACAACTATATTCG
ACGAAGCCATATCCAAAGGTAAATGGTACCATCACAATTCAGTcttCTGA
CGGAGACCTATTCAGTCAAAATACTGACGGGATTGTTATCAAGACTGACA
GTGAGATGAACCCGATAAATTTGccaaattttcgTTCTTGGAAAGACTCG
CTTGGGATGGTTCCAAATGTTGATTTGAGAAAACTGTTAGCAAAGGGTGA
TGTAGATTATTCGAAGCTCGAACCATCAGAG
Run BLAST on NCBI

protein sequence of TCONS_00056842-protein

>TCONS_00056842-protein ID=TCONS_00056842-protein|Name=TCONS_00056842-protein|organism=Clytia hemisphaerica|type=polypeptide|length=143bp
TERLRLPFLRGSYFDTVECLLVPEIHTYFIMKRENLSYRDATQYMYGEFQ
PTVFHIMLLENEQLYSTKPYPKVNGTITIQSSDGDLFSQNTDGIVIKTDS
EMNPINLPNFRSWKDSLGMVPNVDLRKLLAKGDVDYSKLEPSE
Run BLAST on NCBI

transcript from alignment at scaffold_284:148942..150263+

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056842 ID=TCONS_00056842|Name=TCONS_00056842|organism=Clytia hemisphaerica|type=transcript|length=1322bp|location=Sequence derived from alignment at scaffold_284:148942..150263+ (Clytia hemisphaerica)
gaacAGAGAGGCTTCGATTACCGTTTTTGAGGGGATCCTATTTTGACACA
GTTGAATGTTTGCTTGTGCCAGAAATACACACCTACTTTATCATGAAGAG
GGAGAACCTTTCATACAGAGACGCAACCCAATATATGTATGGCGAATTTC
AACCAACTGTTTTTCACATCATGCTACTTGAAAATGTACGTGTGTTTACA
TGTTTTTGTCTCTCTTGATTTTCATGCACaagttaactttttattttatg
atattttcgATTGGAAAGACAACAGCTGCTTTAATTGAGTCTTCAGGAAA
CTGTTTAGTAATATTCGCCATAGCATGTATtacctttttgtaattttagg
aACAACTATATTCGACGAAGCCATATCCAAAGGTAAATGGTACCATCACA
ATTCAGTGTAAGTCTTTAGTCTAATCTTCAGATTTTAGCAAAGAAAGGTA
AatttctaaaccctccaaaatattttattcgCTGGCATCATTCATCAGTG
TGACGAATACGAACAATATTACTTCTGCAGATCATCTCTTTCACTTTTTA
CGATATTTTAATCCTAATTTATTATAAAGAATAACAAAACtaatcaaaac
acaaaaatgtaTCATCGAACTATTTTCGTAGAATTTGaataagattttga
aatttaaacagtCTACTGTTTCTAGTTTCAGAACTATAATTTCTTTTGTC
TACTGCGCATGTGCTCCACTTTTTTTGCTATATTTTGtttcaaatctttt
tcatttttaagcttCTGACGGAGACCTATTCAGTCAAAATACTGACGGGA
TTGTTATCAAGACTGACAGTGAGATGAACCCGATAAATTTGGTGAGTAGT
TGATTTTTCAACAACTCTCAAGCTCCTGataatatttaaattttctaaCT
TTCTCGTTTTATATTTCTATGATTCTCGATGGCGATTTTACCATTGAAAG
TTCATTTAATACCTAACTTTCCGGTATTATGCCCGCTGTTTACAAAGGCA
CGTGAATGTTATTTTTAAATACCATTACTGCACTgtgcatacacgctttt
ttataagacctAGTACTTATTAGACCTTTGCTTATTTTGTGTGATTTAAC
AAACTTACTTCATTTACGTTGACTCTTAGCCATCCGGAAATGACTGagct
ttttttgctgactttctCTTAAAAAAACGGGTAGCATACTTTGAGGCATT
CTATctattttcagccaaattttcgTTCTTGGAAAGACTCGCTTGGGATG
GTTCCAAATGTTGATTTGAGAAAACTGTTAGCAAAGGGTGATGTAGATTA
TTCGAAGCTCGAACCATCAGAG

Coding sequence (CDS) from alignment at scaffold_284:148942..150263+

>TCONS_00056842 ID=TCONS_00056842|Name=TCONS_00056842|organism=Clytia hemisphaerica|type=CDS|length=1716bp|location=Sequence derived from alignment at scaffold_284:148942..150263+ (Clytia hemisphaerica)
acAGAGAGGCTTCGATTACCGTTTTTGAGGGGATCCTATTTTGACACAGT
TGAATGTTTGCTTGTGCCAGAAATACACACCTACTTTATCATGAAGAGGG
AGAACCTTTCATACAGAGACGCAACCCAATATATGTATGGCGAATTTCAA
CCAACTGTTTTTCACATCATGCTACTTGAAAATgaACAACTATATTCGAC
GAAGCCATATCCAAAGGTAAATGGTACCATCACAATTCAGTcttCTGACG
GAGACCTATTCAGTCAAAATACTGACGGGATTGTTATCAAGACTGACAGT
GAGATGAACCCGATAAATTTGccaaattttcgTTCTTGGAAAGACTCGCT
TGGGATGGTTCCAAATGTTGATTTGAGAAAACTGTTAGCAAAGGGTGATG
TAGATTATTCGAAGCTCGAACCATCAGAGacAGAGAGGCTTCGATTACCG
TTTTTGAGGGGATCCTATTTTGACACAGTTGAATGTTTGCTTGTGCCAGA
AATACACACCTACTTTATCATGAAGAGGGAGAACCTTTCATACAGAGACG
CAACCCAATATATGTATGGCGAATTTCAACCAACTGTTTTTCACATCATG
CTACTTGAAAATgaACAACTATATTCGACGAAGCCATATCCAAAGGTAAA
TGGTACCATCACAATTCAGTcttCTGACGGAGACCTATTCAGTCAAAATA
CTGACGGGATTGTTATCAAGACTGACAGTGAGATGAACCCGATAAATTTG
ccaaattttcgTTCTTGGAAAGACTCGCTTGGGATGGTTCCAAATGTTGA
TTTGAGAAAACTGTTAGCAAAGGGTGATGTAGATTATTCGAAGCTCGAAC
CATCAGAGacAGAGAGGCTTCGATTACCGTTTTTGAGGGGATCCTATTTT
GACACAGTTGAATGTTTGCTTGTGCCAGAAATACACACCTACTTTATCAT
GAAGAGGGAGAACCTTTCATACAGAGACGCAACCCAATATATGTATGGCG
AATTTCAACCAACTGTTTTTCACATCATGCTACTTGAAAATgaACAACTA
TATTCGACGAAGCCATATCCAAAGGTAAATGGTACCATCACAATTCAGTc
ttCTGACGGAGACCTATTCAGTCAAAATACTGACGGGATTGTTATCAAGA
CTGACAGTGAGATGAACCCGATAAATTTGccaaattttcgTTCTTGGAAA
GACTCGCTTGGGATGGTTCCAAATGTTGATTTGAGAAAACTGTTAGCAAA
GGGTGATGTAGATTATTCGAAGCTCGAACCATCAGAGacAGAGAGGCTTC
GATTACCGTTTTTGAGGGGATCCTATTTTGACACAGTTGAATGTTTGCTT
GTGCCAGAAATACACACCTACTTTATCATGAAGAGGGAGAACCTTTCATA
CAGAGACGCAACCCAATATATGTATGGCGAATTTCAACCAACTGTTTTTC
ACATCATGCTACTTGAAAATgaACAACTATATTCGACGAAGCCATATCCA
AAGGTAAATGGTACCATCACAATTCAGTcttCTGACGGAGACCTATTCAG
TCAAAATACTGACGGGATTGTTATCAAGACTGACAGTGAGATGAACCCGA
TAAATTTGccaaattttcgTTCTTGGAAAGACTCGCTTGGGATGGTTCCA
AATGTTGATTTGAGAAAACTGTTAGCAAAGGGTGATGTAGATTATTCGAA
GCTCGAACCATCAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035806XLOC_035806Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056842-exon-scaffold_284-1491911889:148942..149126TCONS_00056842-exon-scaffold_284-1491911889:148942..149126Clytia hemisphaericaexon
TCONS_00056842-exon-scaffold_284-1510915933:148942..149126TCONS_00056842-exon-scaffold_284-1510915933:148942..149126Clytia hemisphaericaexon
TCONS_00056842-exon-scaffold_284-1575043694:148942..149126TCONS_00056842-exon-scaffold_284-1575043694:148942..149126Clytia hemisphaericaexon
TCONS_00056842-exon-scaffold_284-1491911889:149291..149348TCONS_00056842-exon-scaffold_284-1491911889:149291..149348Clytia hemisphaericaexon
TCONS_00056842-exon-scaffold_284-1510915933:149291..149348TCONS_00056842-exon-scaffold_284-1510915933:149291..149348Clytia hemisphaericaexon
TCONS_00056842-exon-scaffold_284-1575043694:149291..149348TCONS_00056842-exon-scaffold_284-1575043694:149291..149348Clytia hemisphaericaexon
TCONS_00056842-exon-scaffold_284-1491911889:149703..149782TCONS_00056842-exon-scaffold_284-1491911889:149703..149782Clytia hemisphaericaexon
TCONS_00056842-exon-scaffold_284-1510915933:149703..149782TCONS_00056842-exon-scaffold_284-1510915933:149703..149782Clytia hemisphaericaexon
TCONS_00056842-exon-scaffold_284-1575043694:149703..149782TCONS_00056842-exon-scaffold_284-1575043694:149703..149782Clytia hemisphaericaexon
TCONS_00056842-exon-scaffold_284-1491911889:150156..150263TCONS_00056842-exon-scaffold_284-1491911889:150156..150263Clytia hemisphaericaexon
TCONS_00056842-exon-scaffold_284-1510915933:150156..150263TCONS_00056842-exon-scaffold_284-1510915933:150156..150263Clytia hemisphaericaexon
TCONS_00056842-exon-scaffold_284-1575043694:150156..150263TCONS_00056842-exon-scaffold_284-1575043694:150156..150263Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056842-proteinTCONS_00056842-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_284supercontigscaffold_284:148942..150263 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.27848	1.09088	1.26661	0.531078	0.862049	0.851503	0	0.769399	0.269337	0	0.647634	0.532162	0.637706	0.551887	0.272236	0.486918	0	0.614819	0	0.177768	0.618052	0	0.183235	0.166587	3.26003	3.67516	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056842 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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