|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056851 ID=TCONS_00056851|Name=TCONS_00056851|organism=Clytia hemisphaerica|type=transcript|length=3275bpRun BLAST on NCBI transcript from alignment at scaffold_284:241751..250634+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00056851 ID=TCONS_00056851|Name=TCONS_00056851|organism=Clytia hemisphaerica|type=transcript|length=8884bp|location=Sequence derived from alignment at scaffold_284:241751..250634+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00056851 vs. Swiss-Prot (Human)
Match: GP155 (Integral membrane protein GPR155 OS=Homo sapiens GN=GPR155 PE=2 SV=2) HSP 1 Score: 220.705 bits (561), Expect = 1.524e-59 Identity = 145/416 (34.86%), Postives = 238/416 (57.21%), Query Frame = 1
Query: 109 PTLVQCFGIILIGYLTGKFKMITPNQGKGLATFIGTFSLPALIFKAMIEVKFPLINWTFWTALLIAKAIVFLLVMIPSLFL-EKDKPYAAAGLYSIFVSQSNDMAFGLPLLQAVFNDPQTKFLVNYVFLTAPISLAILNPIGFALLEYQKAKDYQIESGKKSSIGRIMWTTVKGVITNPLVFMIVFAIIFNFIFHSKLPPVIDGLFTSFSNAFGATALFYLGWKLGCCQPDDEKMTGLSYALPVILVLLKSVFMPILMTFLTSFLTDGFINDSNSVQAGANATMKYKNATSYKTFAFLYGEIPTAPTVLLYANKYNFXXXXXXXXXXXXXXFAAPMLFISIRMLQVNNMLNVNQFDVLIGKVAKDXXXXXXXXXXYVLAVLFSLRAYRRKPHSLTMILIGFQFLLALSGAIFKDFI 1353
P L++CFGI+L GY+ G+ +IT Q KGL F+ F+LPAL+FK M+ + F ++W+F ++LIAKA VF +V + +L + D ++ AGL+ IF +QSND A G P+++A++ ++L Y++L APISL +LNPIGF E QK KD Q S K +I+ + V+ NP+VFM+ I FNFI K+P ++ N+F +ALFYLG + +++ ++ + ++L+ K + +P+L + L G DS N TS +AFLYG P AP V ++A ++N E++ SG+V+ T +AP++++S +L M + I V+ D+SI+S++ ++ LA+L + Y++ PH LT L+ Q ++ +G + +F+
Sbjct: 44 PALLECFGIVLCGYIAGRANVITSTQAKGLGNFVSRFALPALLFKNMVVLNFSNVDWSFLYSILIAKASVFFIVCVLTLLVASPDSRFSKAGLFPIFATQSNDFALGYPIVEALYQTTYPEYL-QYIYLVAPISLMMLNPIGFIFCEIQKWKDTQNASQNKI---KIVGLGLLRVLQNPIVFMVFIGIAFNFILDRKVPVYVENFLDGLGNSFSGSALFYLGLTM---VGKIKRLKKSAFVVLILLITAKLLVLPLLCREMVELLDKG---DS------------VVNHTSLSNYAFLYGVFPVAPGVAIFATQFNMEVEIITSGMVISTFVSAPIMYVSAWLLTFPTM-DPKPLAYAIQNVSFDISIVSLISLIWSLAILLLSKKYKQLPHMLTTNLLIAQSIVC-AGMMIWNFV 435 HSP 2 Score: 96.2857 bits (238), Expect = 4.093e-20 Identity = 63/198 (31.82%), Postives = 103/198 (52.02%), Query Frame = 1
Query: 1876 SERSHITHHVVLLLIMSIVIALNISITVWSNLDKSLSNVQGLYLELRMASVVLTYGQGFFSFATFGFIKEFFMLGCFEKVYKQYLKLRGRKKITLEC-ESELDIDILLLRKRFIKHHLVQCSKDIVRCLSFRLRKFEGVFTGTCLIDWLLEEGLITDRADGIKYGNMLLRGRVIEHCLQEHYFYDLPYFYQFTGRAFE 2466
S +T HV+L L++ I + N+S +W ++ LY+EL+ V +GQGF SF FG K +L +K+ L+ K T E +S + +I + ++FI +H C ++IV+ + G F G L+ WL+E GL +DR + + YG+ L++G VI+H E+ F D FY+F ++ E
Sbjct: 650 SGDQQLTRHVLLCLLLIIGLFANLSSCLWWLFNQEPGR---LYVELQFFCAVFNFGQGFISFGIFGLDKHLIILP-----FKRRLEFLWNNKDTAENRDSPVSEEIKMTCQQFIHYHRDLCIRNIVKERRCGAKTSAGTFCGCDLVSWLIEVGLASDRGEAVIYGDRLVQGGVIQHITNEYEFRDEYLFYRFLQKSPE 839 The following BLAST results are available for this feature:
BLAST of TCONS_00056851 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.