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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056857 ID=TCONS_00056857|Name=TCONS_00056857|organism=Clytia hemisphaerica|type=transcript|length=3015bpRun BLAST on NCBI protein sequence of TCONS_00056857-protein >TCONS_00056857-protein ID=TCONS_00056857-protein|Name=TCONS_00056857-protein|organism=Clytia hemisphaerica|type=polypeptide|length=510bp MPMGAAPSVGRLPASLKLTYGVGHVLNDLCASMWFSYMLLYMHKVVTFNNRun BLAST on NCBI transcript from alignment at scaffold_284:321492..339170+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00056857 ID=TCONS_00056857|Name=TCONS_00056857|organism=Clytia hemisphaerica|type=transcript|length=17679bp|location=Sequence derived from alignment at scaffold_284:321492..339170+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_284:321492..339170+ >TCONS_00056857 ID=TCONS_00056857|Name=TCONS_00056857|organism=Clytia hemisphaerica|type=CDS|length=15330bp|location=Sequence derived from alignment at scaffold_284:321492..339170+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00056857 vs. Swiss-Prot (Human)
Match: MFS12 (Major facilitator superfamily domain-containing protein 12 OS=Homo sapiens GN=MFSD12 PE=1 SV=2) HSP 1 Score: 353.214 bits (905), Expect = 4.113e-110 Identity = 204/444 (45.95%), Postives = 270/444 (60.81%), Query Frame = 1
Query: 208 PASL--KLTYGVGHVLNDLCASMWFSYMLLYMHKVVTFNNVNAGFVVLAGQIADAISTPFVGLQSDKTYN--VKYGRRKIWHLVGVICVTCSFPFIFHLCVGGCANAPQYALMVYYIPFIVIFQFGWASTQISHLSLIPELTHCQQGKVELNAIRY-FATXXXXXXXXXXXXXXXXXKSSKTSGNQDLESS--LSIADADKFFILATSVVALGVFFMVIFHLFVKEPSCTKEIDSVNEEEQEH---LVGGAKKPQLAQKTVNDWFKTPVFYKVGWLYMMTRLIVNISQVYLAYFVTETLKLNKSAIAIAPAVVYVTGIFASLIAKKLNRALGLKFTYFFGLCFILAGSVYFYFMRSLDIKYRPAVYGACVCLGLGGSTLLINSLAMISQMIGRNVDTSAFVYGSMSLLDKFSNGAAIMLIQFLHPCKDQVICCYSCQLYYRNIM 1509
P SL +L+Y VGH LNDLCASMWF+Y+LLY+H V +++ AG ++L GQ+AD + TP VG ++D+ + +YG RK WHLVG +CV SFPFIF C+G A P++A ++YY PFIVIFQFGWASTQISHLSLIPEL KVEL A+RY F V + V +L SS+ QD+ S L D F L+ VV +G F ++FHL +E EE EH L +P L K W + P FY+VG LYM TRLIVN+SQ Y+A ++T +L L K IA P V+Y++G +S + K +N+ +G TYF GL ILA + + L + AVY A V LG G +T+L+ SLAM + +IG + ++ AFVYGSMS LDK +NG A+M IQ LHPC + +CC +C +Y M
Sbjct: 16 PLSLVARLSYAVGHFLNDLCASMWFTYLLLYLHSVRAYSSRGAGLLLLLGQVADGLCTPLVGYEADRAASCCARYGPRKAWHLVGTVCVLLSFPFIFSPCLGCGAATPEWAALLYYGPFIVIFQFGWASTQISHLSLIPELVTNDHEKVELTALRYAFTVVANITVYGAAWLLLHLQGSSRVEPTQDISISDQLGGQDVPVFRNLSLLVVGVGAVFSLLFHLGTRE-----RRRPHAEEPGEHTPLLAPATAQPLLLWK---HWLREPAFYQVGILYMTTRLIVNLSQTYMAMYLTYSLHLPKKFIATIPLVMYLSGFLSSFLMKPINKCIGRNMTYFSGLLVILAFAAWVALAEGLGV----AVYAAAVLLGAGCATILVTSLAMTADLIGPHTNSGAFVYGSMSFLDKVANGLAVMAIQSLHPCPSE-LCCRACVSFYHWAM 446 The following BLAST results are available for this feature:
BLAST of TCONS_00056857 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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